BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G25577.1

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484315 jgi|Araly1|484315|fgenesh2_kg.5__307__AT3G25577.1          457    3e-128


> Ahg484315 jgi|Araly1|484315|fgenesh2_kg.5__307__AT3G25577.1
Length=369

 Score =  457 bits (247),  Expect = 3e-128
 Identities = 348/392 (89%), Gaps = 25/392 (6%)
 Strand=Plus/Plus

Query  1    ATGATGAAACAGTATATGTCCAAGGTGACCGAGTTCTTTAAGGCTCCTATGACCAACGGT  60
            ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGATGAAACAGTATTTGTCCAAGGTCACCGAGTTCTTTAAGGCTCCTATGACCAACGGT  60

Query  61   ATGGCTCTTGGTACAGCGGCCGTCGCAGTTATGGCAAGCAAGCGAGACCTAT-TCATGGA  119
            |||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct  61   ATGGCTCTTGGTTCAGCGGCCGTCGCAGTTATGGCAAGTAAGCGAGACCT-TCTCATGGA  119

Query  120  ACAGTTGGCCACAAAGAAGAAGGAGTACTTCAAGGAGGAGAAGTCGGCGACGGGCTTGAA  179
             || || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  120  TCACTTAGCCACGAAGAAGAAGGAGTACTTGAAGGAGGAGAAGTCGGCGACGGGCTTGAA  179

Query  180  GGAGAACGTGGTGGAGGCCGATAAGAAGGAGTCGGCGGCGGACGTGAAGGAGAACGCAGT  239
            |||||||||||||||||| | ||||| |||||||||| ||||||| ||||||||||||| 
Sbjct  180  GGAGAACGTGGTGGAGGCGGCTAAGATGGAGTCGGCGACGGACGTCAAGGAGAACGCAGA  239

Query  240  ATAGAGGAGTAGCGTTAATGagttttagtttggtcttttggttttgatgttttctagcta  299
            |||||||| |||||||||||||||||| ||||              ||||||||||| | 
Sbjct  240  ATAGAGGACTAGCGTTAATGAGTTTTAATTTG--------------ATGTTTTCTAG-T-  283

Query  300  gtttgatcagttt-gtggttttttttAATCGTTTCTTTTAAGTTTTAACATCGGTAGCTA  358
             || ||||||||| ||| ||||||||||||||| ||||||||||||||||||| | ||||
Sbjct  284  -TT-GATCAGTTTTGTG-TTTTTTTTAATCGTT-CTTTTAAGTTTTAACATCGCTGGCTA  339

Query  359  TAATGATGTTTAGAGTCAAAACTTGATAATAA  390
             | |||||||||||||||||||||||||||||
Sbjct  340  -A-TGATGTTTAGAGTCAAAACTTGATAATAA  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14613590587


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5