BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25580.1
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484316 jgi|Araly1|484316|fgenesh2_kg.5__308__AT3G25580.1 1184 0.0
Ahg480833 jgi|Araly1|480833|fgenesh2_kg.3__3534__AT2G18990.1 883 0.0
> Ahg484316 jgi|Araly1|484316|fgenesh2_kg.5__308__AT3G25580.1
Length=781
Score = 1184 bits (641), Expect = 0.0
Identities = 741/787 (94%), Gaps = 15/787 (2%)
Strand=Plus/Plus
Query 11 TCATCATCAACAATTCGAATCTGAAATCTGCAATTCACGAGAAGAAGtttttttttGTAA 70
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TCATCATCAACAATTCGAATCTGAAATCTGCAATTCACGAGAAGAAG----CTTTTGTAA 56
Query 71 CAATGGCGAATCCAATTCAAGAGATTATTGAGAAACAAGTTCTAACGGTAGCGAAAGCTA 130
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 57 CAATGGCGAATCCAATTCAAGAGATTATTGAGAAACAAGTTCTATCGGTAGCGAAAGCTA 116
Query 131 TGGAGGATAAGATAGACGACGAGATAGCGTCTCTGGAAAAGCTTGATGAAGATGATTTGG 190
||||||||||| ||||||||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct 117 TGGAGGATAAGCTAGACGACGAGATTGCGTCTCTGGAGAAGCTTGACGAAGACGATTTGG 176
Query 191 AAGTTTTGAGAGAGAGGAGATTGAAGCAGATGAAGAAAATGGCGGAGAAGAAGAAACGGT 250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 177 AAGTTTTGAGAGAGAGGAGATTGAAGCAGATGAAGAAAATGGCGGAGAAGAAGAAACGTT 236
Query 251 GGATGAGTATTGGACATGGTGAATACTCTGAGATTCATTCTGAGAAAGATTTCTTCTCCG 310
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGATGAGTCTTGGACATGGTGAATACTCTGAGATTCATTCTGAGAAAGATTTCTTCTCCG 296
Query 311 TTGTTAAATCTAGTGAACGCGTCGTTTGTCACTTCTACCGTGAGAATTGGCCCTGTAAAG 370
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 297 TTGTTAAAGCTAGTGAACGCGTCGTTTGTCACTTCTACCGTGAGAATTGGCCTTGTAAAG 356
Query 371 TGATGGATAAACACATGAGC-ATATTGGCAAAGCAACACATTGAGACACGTTTCGTGAAG 429
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGATGGATAAACACATGA-CTATATTGGCAAAGCAACACATTGAGACACGTTTCGTGAAG 415
Query 430 ATCCAAGCTGAGAAAAGTCCATTCTTGGCTGAGAGGCTTAAGATTGTTGTTCTTCCCACT 489
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATCCAAGCTGAGAAAAGTCCATTCTTGGCTGAGAGGCTTAAGATTGTTGTTCTTCCCACC 475
Query 490 CTTGCCCTCATTAAGAACACTAAAGTCGATGATTATGTGGTTGGGTTCAATGAACTGGGA 549
||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 476 CTTGCCCTCATTAAGAATACTAAAGTGGATGATTATGTGGTTGGGTTCAATGAGCTGGGA 535
Query 550 GGGAAAGATGATTTTAGCACAGAAGATCTTGAAGAGAGAATAGCCAGAGCGCAAGTGATC 609
|||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 536 GGGAAAGATGATTTCAGCACAGAGGATCTGGAAGAGAGAATAGCCAGAGCACAAGTGATC 595
Query 610 CATTACGAGGGAGAATCATCTCTTAAACAAAAGTCTACAACACAAGTCAGAAGGAACGTG 669
|||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 596 CATTACGAGGGAGAGTCATCTCTAAAACCGAAGTCTACAACACAAGTCAGAAGGAACGTG 655
Query 670 AGGCAGAGTGCTCGTTCAGATTCTGACTCCGAATAAATCCCTTT-TCTTATCAA-A--GG 725
|||||||||||||||||||||||||||||||||||||||| | | |||| |||| | ||
Sbjct 656 AGGCAGAGTGCTCGTTCAGATTCTGACTCCGAATAAATCC-TATGTCTTTTCAACAAAGG 714
Query 726 TTTGTTCGTTTGTATCCTCTTGTTAGTTGTAATACT---T-GCAATTCATCGTTTTGATG 781
||||||||||||| |||| |||||| |||||||||| | | |||||||||||||| ||
Sbjct 715 TTTGTTCGTTTGTGTCCTGTTGTTATTTGTAATACTAAGTAGTAATTCATCGTTTTGGTG 774
Query 782 ATCAAAA 788
||| |||
Sbjct 775 ATCTAAA 781
> Ahg480833 jgi|Araly1|480833|fgenesh2_kg.3__3534__AT2G18990.1
Length=811
Score = 883 bits (478), Expect = 0.0
Identities = 592/647 (91%), Gaps = 8/647 (1%)
Strand=Plus/Plus
Query 69 AACAATGGCGAATCCAATTCAAGAGATTATTGAGAAACAAGTTCTAACGGTAGCGAAAGC 128
||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 39 AACCATGGCGAATCCTATTCAAGAGATTCTGGAGAAACAAGTTCTAACGGTAGCGAAAGC 98
Query 129 TATGGAGGATAAGATAGACGACGAGATAGCGTCTCTGGAAAAGCTTGATGAAGATGATTT 188
|||||| |||||| ||||||||||||| |||||| | ||||||||||| ||||| |||||
Sbjct 99 TATGGAAGATAAGCTAGACGACGAGATCGCGTCTTTAGAAAAGCTTGACGAAGACGATTT 158
Query 189 GGAAGTTTTGAGAGAGAGGAGATTGAAGCAGATGAAGAAAATGGCGGAGAAGAAGAAACG 248
|| |||||||||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 159 AGAGGTTTTGAGAGAGAGAAGGTTAAAGCAGATGAAGAAAATGGCAGAGAAGAAGAAACG 218
Query 249 GTGGA-TGAGTATTGGACATGGTGAATACTCTGAGATTCATTCTGAGAAAGATTTCTTCT 307
|||| || || ||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 219 TTGGATTG-GTCTTGGACATGGTGAATACTCTGAGATCCATTCTGAGAAAGACTTCTTCT 277
Query 308 CCGTTGTTAAATCTAGTGAACGCGTCGTTTGTCACTTCTACCGTGAGAATTGGCCCTGTA 367
|| | |||||| | || ||||||||||| || ||||||| ||| ||||||||||| ||||
Sbjct 278 CCATCGTTAAAGCCAGCGAACGCGTCGTCTGCCACTTCTTCCGCGAGAATTGGCCTTGTA 337
Query 368 AAGTGATGGATAAACACATGAGCATATTGGCAAAGCAACACATTGAGACACGTTTCGTGA 427
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 338 AAGTGATGGATAAACATATGAGTATATTGGCAAAGCAACACATTGAGACACGTTTTGTGA 397
Query 428 AGATCCAAGCTGAGAAAAGTCCATTCTTGGCTGAGAGGCTTAAGATTGTTGTTCTTCCCA 487
|||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||| |
Sbjct 398 AGATTCAAGCTGAGAAAAGTCCGTTCTTGGCTGAGAGACTCAAGATTGTTGTTCTTCCTA 457
Query 488 CTCTTGCCCTCATTAAGAACACTAAAGTCGATGATTATGTGGTTGGGTTCAATGAACTGG 547
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 458 CTCTTGCTCTCATTAAGAACACTAAAGTCGATGATTATGTGGTTGGGTTCAATGAGCTGG 517
Query 548 GAGGGAAAGATGATTTTAGCACAGAAGATCTT-GAAGAGAGAATAGCCAGAGCGCAAGTG 606
|||||||||||||||| || ||||| ||| || |||||||||||||||||||||||||||
Sbjct 518 GAGGGAAAGATGATTTCAGTACAGAGGAT-TTGGAAGAGAGAATAGCCAGAGCGCAAGTG 576
Query 607 ATCCATTACGAGGGAGAATCATC-T--CTTAAACAAAAGTCTACAACACAAGTCAGAAGG 663
||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||
Sbjct 577 ATCCATTACGAGGGAGAGTCATCGTCGCTTAAACCAAAGTCTACAACACAAGTCAGAAGG 636
Query 664 AACGTGAGGCAGAGTGCTCGTTCAGATTCTGACTCCGAATAAA-TCC 709
||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 637 AACGTGAGGCAGAGTGCTCGTTCAGATTCCGACTCCGAATAAAATCC 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33510044043
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5