BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25585.2
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484318 jgi|Araly1|484318|fgenesh2_kg.5__310__AT3G25585.1 2423 0.0
Ahg471515 jgi|Araly1|471515|fgenesh2_kg.1__1469__AT1G13560.1 1103 0.0
> Ahg484318 jgi|Araly1|484318|fgenesh2_kg.5__310__AT3G25585.1
Length=1636
Score = 2423 bits (1312), Expect = 0.0
Identities = 1481/1559 (95%), Gaps = 25/1559 (2%)
Strand=Plus/Plus
Query 47 ctctctctctcctctGCTGATTCTTCGCTGACTCTT-GCCTCCTCGACGTCGTCTTCGGC 105
|||||||||| ||||||||||||||| |||| |||| |||||||| |||||||||||||
Sbjct 87 CTCTCTCTCT-CTCTGCTGATTCTTCTCTGATTCTTACCCTCCTCGTCGTCGTCTTCGGC 145
Query 106 TTTGTAGCATCTCGCCGAA--G-CGTTGATTTGAGAGAGACCCAATTTGGATTGTT---A 159
||||||||||||||||||| | |||||||||||||||||||||||||||||| || |
Sbjct 146 TTTGTAGCATCTCGCCGAAGCGTCGTTGATTTGAGAGAGACCCAATTTGGATTTTTACAA 205
Query 160 GAAAATGGGTTACATAGGAGCTCATGGTGTAGCTGCTCTTAAGAAACACAAATACAGTGG 219
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 AAAAATGGGTTACATAGGAGCTCATGGTGTAGCTGCTCTTAAGAAACACAAATACAGTGG 265
Query 220 TGTTGATCACTCTTATCTTGCCAAATATGTTCTCCAACCTTTTTGGAACCGTTTTGTCAA 279
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 TGTTGATCATTCTTATCTTGCCAAATATGTTCTCCAACCTTTTTGGAACCGTTTTGTCAA 325
Query 280 AATCTTCCCTCTATGGATGCCCCCCAACATGATAACACTTATGGGGTTCATGTTTCTTCT 339
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 326 AATCTTCCCTCTTTGGATGCCACCCAACATGATAACACTTATGGGGTTCATGTTTCTTCT 385
Query 340 CACATCTGCTCTCTTAGGCTATATATACTCACCTAAGTTGGATTCTCCACCTCCTCGATG 399
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 386 CACATCTGCTCTGTTAGGCTATATATACTCACCTAAGTTGGATTCTCCTCCTCCTCGATG 445
Query 400 GGTCCACTTTGCACACGGCTTACTTCTGTTTTTATATCAGACATTTGATGCGGTTGATGG 459
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 446 GGTCCATTTTGCACACGGCTTACTTCTATTTTTGTATCAGACATTTGATGCGGTTGATGG 505
Query 460 GAAGCAAGCACGAAGAACAAATTCATCTAGCCCACTAGGAGAGCTTTTTGACCATGGTTG 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GAAGCAAGCACGAAGAACAAATTCATCTAGCCCACTAGGAGAGCTTTTTGACCATGGTTG 565
Query 520 CGATGCACTTGGCTGTGCGTTAGAAACAATGGCATATGGGAGTACTGCTATGTGTGGAAG 579
|||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 566 CGATGCTCTTGGTTGTGCGTTAGAAACAATGGCATATGGGAGCACTGCAATGTGTGGAAG 625
Query 580 AGATACTTTCTGGTTTTGGGTTATTTCTGCTGTTCCATTTTTTGGAGCAACATGGGAACA 639
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 626 AGATACTTTCTGGTTTTGGGTTATTTCAGCTGTTCCATTTTTTGGAGCAACATGGGAACA 685
Query 640 CTATTTTACCAATACGCTTACTCTTCCGGTAGTCAATGGTCCTACAGAAGGTCTTGCACT 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 CTATTTTACCAATACGCTTACTCTTCCGGTAGTCAATGGTCCTACAGAAGGTCTTGCACT 745
Query 700 TATATACTGTGGCCATTTCTTCACAGCCATTGTTGGTGCGGAGTGGTGGGCTCAGCCGTT 759
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 746 TATATACTGTGGCCATTTCTTCACAGCCATTGTTGGTGCCGAGTGGTGGGCTCAGCCGTT 805
Query 760 TGGGAAGTCGATTCCTTTGTTTAGTTGGGTTCCGTTTTTGAACGAGATGCAAATGTCCAG 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TGGGAAGTCGATTCCTTTGTTTAGTTGGGTTCCGTTTTTGAACGAGATGCAAATGTCCAG 865
Query 820 AATAATACTATTCTCCATGATTTTCTTTGCTGTTATACCAACCCTTGCAATCAACACGTC 879
||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 866 AATAATACTATTCACGATGATATTCTTCGCTGTTATACCAACCCTTGCAATCAACACGTC 925
Query 880 TAATGTTTACAAAGTTGTACATTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATGCT 939
||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 926 TAATGTTTACAAAGTTGTACAGTCAAGAAAAGGAAGTATGCTTCTAGCATTAGCTATGCT 985
Query 940 ATATCCCTTAGTCACGTTAATTGCAGGAGTTCTGATTTGGGATTACTTGTCTCCAATTGA 999
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 986 ATATCCCTTAGCCACGTTAATTGCAGGAGTTTTGATTTGGGATTACTTGTCTCCAATTGA 1045
Query 1000 TCTCATAAGAAACTACCCTCACTTAGTTGTGTTGGGAACTGGTCTTGCATTTGGATTCCT 1059
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1046 TCTCATAAGAAACTACCCTCACTTAGTTGTATTGGGAACTGGTCTTGCATTTGGATTCCT 1105
Query 1060 TGTGGGAAGAATGATTCTAGCTCACTTATGTGACGAACCAAAAGGATTGAAAACAAACAT 1119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1106 TGTGGGAAGAATGATTCTAGCTCACTTATGTGACGAACCAAAAGGATTAAAAACAAACAT 1165
Query 1120 GTGTATGTCACTGCTTTACCTTCCATTTGCACTAGCAAATGCTCTAACCGCTAGACTCAA 1179
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1166 GTGTATGTCATTGCTTTACCTTCCCTTTGCACTAGCAAATGCTCTAACCGCTAGACTCAA 1225
Query 1180 CGACGGGGTTCCTCTTGTGGATGAGTTTTGGGTTCTTCTTGGATATTGTATATTCACATT 1239
|||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 1226 TGACGGGGTTCCTCTTGTGGACGAGTTTTGGGTCCTTCTTGGTTATTGTATATTCACATT 1285
Query 1240 GTCACTATATGCGCATTTTGCAACTTCAGTCATTCATGAGATCACAACTGCACTTGGAAT 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 GTCACTATATGCGCATTTTGCAACTTCAGTCATTCATGAGATCACAACTGCACTTGGAAT 1345
Query 1300 CTACTGCTTCAGGATTACTCGGAAAGAAGCTTGAAGAAACAA-AATGTGATTGAAATTTT 1358
||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 1346 CTACTGCTTCAGGATTACTCGTAAAGAAGCTTGAAGAAG-AACAATGTGATTGAAATTTT 1404
Query 1359 TAT--TT-ATAAGAAAAAG--CAAATCTTAAGGGAGaaaaaaaaTGCAAATCCCAACACG 1413
||| || | || ||||| ||||||||||| |||| |||| ||||||||||||||||
Sbjct 1405 TATCATTTAAAAAAAAAAAAACAAATCTTAAGCAAGAAGAAAATTGCAAATCCCAACACG 1464
Query 1414 AATCTGAATATTTTGTTACTTGGAATTAAAAATGATTGA-CTGATATGCTTTTGGATGTA 1472
|||||||||||||||||| ||||||||||||| |||||| | ||||||||||||||||||
Sbjct 1465 AATCTGAATATTTTGTTA-TTGGAATTAAAAACGATTGATC-GATATGCTTTTGGATGTA 1522
Query 1473 TACTCATTAATGtttttg-ttttagtgttt-tttttCTTGTTCGGTTGAAATAGGGTAAT 1530
||||||||||||||||| |||| ||||| ||||||||||| ||| |||||||||||||
Sbjct 1523 TACTCATTAATGTTTTTTATTTT--TGTTTGTTTTTCTTGTTTGGTCGAAATAGGGTAAT 1580
Query 1531 TCATGTAGAACCTTTTTGTGTAACGTTTCTAAGaaaaaaaaaTATGGGATTGTTCTAGA 1589
||||||||| ||||||| ||||||||||||||||||| || ||||||||| |||||||
Sbjct 1581 TCATGTAGA-CCTTTTTTTGTAACGTTTCTAAGAAAACAA--TATGGGATTTTTCTAGA 1636
> Ahg471515 jgi|Araly1|471515|fgenesh2_kg.1__1469__AT1G13560.1
Length=1612
Score = 1103 bits (597), Expect = 0.0
Identities = 1001/1194 (84%), Gaps = 35/1194 (3%)
Strand=Plus/Plus
Query 159 AGAA-AATGGGTTACATAGGAGCTCATGGTGTAGCTGCTCTTAAGAAACACAAATACAGT 217
|||| |||||||||||||||||||||||||||||| |||||| | | |||||||||||
Sbjct 190 AGAAGAATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTCATAGGTACAAATACAGT 249
Query 218 GGTGTTGATCACTCTTATCTTGCCAAATATGTTCTCCAACCTTTTTGGAAC-CGTTTTGT 276
|| || ||||||||||||||||||||||| || |||||||||||||||| | || |||||
Sbjct 250 GGAGTGGATCACTCTTATCTTGCCAAATACGTGCTCCAACCTTTTTGGA-CTCGATTTGT 308
Query 277 CAAAATCTTCCCTCTATGGATGCCCCCCAACATGATAACACTTATGGGGTTCATGTTTCT 336
|||| ||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||
Sbjct 309 CAAAGTCTTCCCTCTATGGATGCCACCAAACATGATAACGCTTATGGGGTTTATGTTTCT 368
Query 337 TCTCACATC-TGCTCT-CTTAGGCTATATATACTCACCTAAGTTGGATTCTCCACCTCCT 394
|||| || | |||| || ||| |||||||| |||||| ||||||||||||| |||||
Sbjct 369 AGTCACTTCCT-CTCTGCT-AGGTTATATATATTCACCTCAGTTGGATTCTCCTCCTCCA 426
Query 395 CGATGGGTCCACTTTGCACACGGCTTACTTCTGTTTTTATATCAGACATTTGATGCGGTT 454
|||||||| ||||| ||||| || |||||||| || || ||||||||||| ||||||||
Sbjct 427 CGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGACATTCGATGCGGTC 486
Query 455 GATGGGAAGCAAGCACGAAGAACAAATTCATCTAGCCCACTAGGAGAGCTTTTTGACCAT 514
||||||||||||||| |||| |||||||| |||||||| || ||||||||||| || |||
Sbjct 487 GATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTGGGAGAGCTTTTCGATCAT 546
Query 515 GGTTGCGATGCACTTGGCT-GTGCGTTAGAAACAATGGCATATGGGAGTACTGCTATGTG 573
||||| || ||||||| || ||||||| ||| | ||||||| ||| || ||||| |||||
Sbjct 547 GGTTGTGACGCACTTG-CTTGTGCGTTTGAAGCCATGGCATTTGGAAGCACTGCAATGTG 605
Query 574 TGGAAGAGATACTTTCTGGTTTTGGGTTATTTCTGCTGTTCCATTTTTTGGAGCAACATG 633
||||||||||||||||||||| ||||||||||| ||| ||||||||| |||||| |||||
Sbjct 606 TGGAAGAGATACTTTCTGGTTCTGGGTTATTTCAGCTATTCCATTTTATGGAGCTACATG 665
Query 634 GGAACACTATTTTACCAATACGCTTACTCTTCCGGT-AGTCAATGGTCCTACAGAAGGTC 692
|||||||||||| ||||| || |||| ||||||||| | ||||||| ||||| || ||||
Sbjct 666 GGAACACTATTTCACCAACACACTTATTCTTCCGGTTA-TCAATGGGCCTACTGAGGGTC 724
Query 693 TTGCACTTATATACTGTG-GCCATTTCTTCACAGCCATTGTTGGTGCGGAGTGGTGGGCT 751
|||||||||||| ||| |||| ||||||||||||||||| ||||| || |||||||||
Sbjct 725 TTGCACTTATATT-TGTCAGCCACTTCTTCACAGCCATTGTCGGTGCTGAATGGTGGGCT 783
Query 752 CAGCCGTTTGGGAAGTCGATTCCTTTGTTTAGTTGGGTTCCGTTTTTGAACGAGATGCAA 811
|||| ||| ||| |||| || || |||||||||||||| || ||| |||| ||||| |||
Sbjct 784 CAGCAGTTGGGGCAGTCAATACCATTGTTTAGTTGGGTGCCATTTGTGAATGAGATCCAA 843
Query 812 A-TGTCCAGAATAATACTATTC-TCCATGATTTTCTTT-GCTGTTATACCAACCCTTGCA 868
| | |||||| | | |||| | | |||||| |||| ||||||||||||||| |||||
Sbjct 844 ACT-TCCAGAGCAGTGCTATACATG-ATGATTG-CTTTTGCTGTTATACCAACCGTTGCA 900
Query 869 ATCAACACGTCTAA--TGTTTACAAAGTTGTACATTCAAGAAATGGAAGCATGCT-TCTA 925
|||| || || ||| |||||||| || || |||||||| || |||||| | | ||
Sbjct 901 TTCAAT--GTAAAAAATGTCTACAAAGTCGTTCAATCAAGAAAAGGGAGCATGGTGT-TA 957
Query 926 GCATTAGCTATGCTATATCCCTTAGTCA-CGTTAATTGCAGGAGTTCTGATTTGGGATTA 984
||| |||||||||| |||||||| || | | | ||| ||||||| |||| ||||||||
Sbjct 958 GCACTAGCTATGCTGTATCCCTTTGTTGTCCT-ACTTGGAGGAGTTTTGATATGGGATTA 1016
Query 985 CTTGTCTCCAATTGATCTCATAAGAAAC-TACCCTCACTTAGTTGTGTTGGGAACTGGTC 1043
|||||||||||| |||||||| | ||| ||||||||||||||||| | |||||||| |
Sbjct 1017 CTTGTCTCCAATCAATCTCATA-GCAACATACCCTCACTTAGTTGTACTCGGAACTGGAC 1075
Query 1044 TTGCATTTGGATTCCTTGTGGGAAGAATGATTCTAGCTCACTTATGTGACGAACCAAAAG 1103
|||||||||| || || ||||||||||||||||| |||||||| ||||| || || ||||
Sbjct 1076 TTGCATTTGGTTTTCTAGTGGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAG 1135
Query 1104 GATTGAAAACAAACATGTGTATGTCACTGCTTTACCTTCCATTTGCACTAGCAAATGCTC 1163
|| | |||||||||||||| ||||| || || || ||||| ||||| || |||||||| |
Sbjct 1136 GACTAAAAACAAACATGTGCATGTCGCTACTCTATCTTCCCTTTGCGCTCGCAAATGCGC 1195
Query 1164 TAACCGCTAGACTCAACGAC-GGGGTTCCTCTTGTGGATGAGTTTTGGGTTCTTCTTGGA 1222
||||||| ||| | || | | ||||||||||| || || || || ||||||||||||||
Sbjct 1196 TAACCGCGAGATTGAATG-CTGGGGTTCCTCTAGTCGACGAATTATGGGTTCTTCTTGGC 1254
Query 1223 TATTGTATATTCACATTGTCACTATA-TGCGCATTTTGCAACTTCAGTCATTCATGAGAT 1281
|| || ||||||||| ||||| |||| | ||| |||||||| || ||||| ||||||||
Sbjct 1255 TACTGCATATTCACAGTGTCATTATACTT-GCACTTTGCAACATCGGTCATCCATGAGAT 1313
Query 1282 CACA-ACTGCACTTGGAATCTACTGCTTCAGGATTACTCGGAAAGAAGCTTGAA 1334
||| | || ||||||||||||||||||||||| || || |||||||||||||
Sbjct 1314 CACTGAG-GCTCTTGGAATCTACTGCTTCAGGATCACACGTAAAGAAGCTTGAA 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64182062825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5