BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25590.1
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936236 jgi|Araly1|936236|scaffold_500427.1 1980 0.0
> Ahg936236 jgi|Araly1|936236|scaffold_500427.1
Length=1313
Score = 1980 bits (1072), Expect = 0.0
Identities = 1241/1321 (94%), Gaps = 17/1321 (1%)
Strand=Plus/Plus
Query 244 TCTTGATTTTG-TTAAG-CAATGAAAGAAAGAGGAAAGAGAACAGCAATGGAACGAAGAA 301
||||||||||| || | |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1 TCTTGATTTTGCTTTTGCCAATGAAAGAAAAAGGAAAGAGAACAGCAACGGAACGAAGAA 60
Query 302 ACGACGACGTTTCGTTATATTACAGTACTCCGTCGGAATTCACTTGCCGGAAACATCCAT 361
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 ACGACGACGCTTCGTTATATTACAGCACTCCGTCGGAATTCACTTGCCGGAAACATCCAT 120
Query 362 CTGTTTCCTCCGGCGTTGGTATTTGTCCGTACTGTCTCAACGACAGATTAGTCAATCTCG 421
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 CTGTTTCTTCCGGCGTCGGTATTTGTCCGTACTGTCTCAACGACAGATTAGTCAACCTCG 180
Query 422 TATGCTCCGAATGCGGCGAGCAGCGACTCTCTTCTTGCTCGTGTTCTGATATCTCTCCTA 481
| |||||||||||||| |||||||| ||||||||||||||||| || || |||||||| |
Sbjct 181 TCTGCTCCGAATGCGGTGAGCAGCGTCTCTCTTCTTGCTCGTGCTCCGACATCTCTCCGA 240
Query 482 CTCGAACCGT--AGATGCCGCCGTAGACGCCGCCGTCGGAGAAAACGTTG-TCAGGATCT 538
||||| | | | | ||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 241 ATCGAA-CATCCA-ACGCCGCCGTAGACGCCGCCGCCGGAGAAAACGTTGTTC-GGATCT 297
Query 539 CTTCTCTCATCGACGAAGAGAGGGCGAAACAGAGGAAAGAGACGAAACAGAGGAAAACAG 598
||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 298 CTTCTCTCATCGATGAAGAAACTACGAAACAGAGGAAAGAGACAAAACAGAGGAAAACAG 357
Query 599 AGGAAGTGGTAGTGTTCAAGAGGAGTAGTAGCAGTTGTGTTGAGATTAATAAGAGGACGA 658
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 358 AGGAAGTGGTGGTGTTCAAGAGAAGTAGTAGCAGTTGTGTTGAGATTAATAAGAGAACGA 417
Query 659 AGAATCATAGATTCTCGAGAATCGGTAGGTTTTTCAGGAAGATTAATCTTAAAAAAGAGA 718
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 418 AGAATTATAGATTCTCGAGAATCGGTAGGTTTTTCCGGAAGATTAATCTTAAAAAGGAGA 477
Query 719 GAGATTTTGAGAAGAACAATAATAATGATTCATGGGTTTTGGATTATAACAATGATGTGA 778
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 478 GAGATTTTGAGAAGAACAATAATAACGATTCATGGGTTTTGGATTATAACAATGATGTGA 537
Query 779 AGAAACTAGGAGTTTCGAGATCGAGATCGCTTTGTAGCTTTCGAGGAAAAGATTTGTATT 838
|||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 538 AGAAGCTTGGAGTTTCGAGATCGAGATCGCTTTGTAGTTTTCGAGGAAAAGACTTGTATT 597
Query 839 GTATCGGATCAGAAGAAGACGGTTCTTCGTATTCGGGTGCTTTCTCCGCCGCGAGGAGCT 898
|| ||||||| |||||||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct 598 GTCTCGGATCGGAAGAAGATGGTTCGTCGTATTCCGGTGCTTTCTCCGCCGCGAGAAGCT 657
Query 899 CAAGTGTTAATGGCGGATTAGGGTTATGCGAAACAGAGTATTCTCGGAAGAGTAACTTCG 958
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 CAAGTGTTAATGGCGGATTAGGGTTATGCGAAACAGAGTATCCTCGGAAGAGTAACTTCG 717
Query 959 AAGGAAGGAAGAGCAACTTCAGCGAGACGACGGAGCATTGGAAGAGTAATTTCGAAGGAG 1018
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 718 AAGGAAGGAAGAGTAACTTCAGCGAGACGACGGAGCATCGGAAGAGTAATTTCGAAGGTG 777
Query 1019 GAAGGAAGAGTAATTTCAGTGAGACGACGACGGAGAATCGGAAGAGTAATTTCAGTGAAT 1078
| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 778 GGAGGAAGAGTAATTTCAGCGAGACGACGACGGAGAATCGGAAAAGTAATTTCAGTGAAT 837
Query 1079 CGGAGCCGCCGAGAAGAAGCGGTTTCGAGGCTAGGAAGAGTAATTTCAGTGAAACAGAGT 1138
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 838 CGGAGCCGCCGCGAAGAAGCGGTTTCGAGGCGAGGAAGAGTAATTTCAGTGAAACAGAGT 897
Query 1139 ATCCTACTA-GGAGGAGTAATTTTAGTGAAACAGAGTATAATACTCGAAGAGGAAACAAT 1197
||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 898 ATCCTAC-ACGGAGGAGTAATTTTAGTGAAACAGAGTATAATAGTCGGAGAGGAAACAAT 956
Query 1198 CCGGCGACGGCGGAGAATCATCCACGGAGGAGTAGTAATTACGAAGCAGCGAGGAAAAGC 1257
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CTGGCGACGGCGGAGAATCATCCACGGAGGAGTAGTAATTACGAAGCAGCGAGGAAAAGT 1016
Query 1258 GATTCGGCGGCGATGAATTTTACGAGAAGGGTAATGTCGATGAAAGAGAGTAGCTACTTC 1317
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1017 GATTCGGCGGCGATGAATTTTACGAGAAGGGTAATGTCAATGAAAGAGAGTAGTTACTTC 1076
Query 1318 ACCGGAGGAGAGGAGCCTGGTTTCATTGATCTTAAGTTTGATTCTTCCGGTGGAGGAGGA 1377
||||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 1077 ACCGGAGGAGAAGAGCCTGGTTTCATTGATCTTAAGTTTGATTCTT-C--TGGTGGAGGA 1133
Query 1378 GGAGATGTAAACGACGGCGTTTTGGAACA---CGGAGGAGGAGGATCTTGTCGGAAAGAT 1434
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1134 GGAGATGTAAACGACGGCGTTTTGGAACATGGAGGAGGAGGAGGATCTTGTCGGAAAGAT 1193
Query 1435 GGAGGAGAGTTGCGTAAGAGTCGAAAGAGTTTCAAAGGATGGAAGTGGATATTTGGACAT 1494
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1194 GGAGGAGAGTTGCGTAAGAGTCGAAAGAGTTTCAAAGGATGGAAATGGATATTTGGACAT 1253
Query 1495 CATCAACATCAACTTCATCATCATAACAGAGATTCATGATGAATTTATGAATTATTGAAG 1554
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1254 CATCAACATCAACTTCATCATCATAATAGAGATTCATGATGAATTTATGAATTAT-GAAG 1312
Query 1555 G 1555
|
Sbjct 1313 G 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60182587100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5