BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25597.1 Length=845 Score E Sequences producing significant alignments: (Bits) Value Ahg484322 jgi|Araly1|484322|fgenesh2_kg.5__314__AT3G25597.1 1190 0.0 > Ahg484322 jgi|Araly1|484322|fgenesh2_kg.5__314__AT3G25597.1 Length=840 Score = 1190 bits (644), Expect = 0.0 Identities = 789/855 (92%), Gaps = 25/855 (3%) Strand=Plus/Plus Query 1 ATTTATTATATTTGCTTCTTTGATTAGCCTTTTCCCAATGTCTTCCTTATAGAAGCAAAG 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATTTATTATATTTGCTTGTTTGATTAGCCTTTTCCCAATGTCTTCCTTATAGAAGCAAAG 60 Query 61 AACAAAGGAGTTCCTTCAAACAAAATATCCCAAATTACTAAAATATGTTAGGATTTAGTC 120 ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 61 AACAAAGGAGTTCCTTCAAACCAAATATCCCAAATTACTAAGATATGTTAGGATTTAGTT 120 Query 121 TGTTCTTTAATTTCTTCTATTATCTTTCTATTTCTTA-CCCATCTCTCTCTTTCAAGATT 179 ||||||||||| ||||||||||||||||||||||||| | | ||||||||||||||||| Sbjct 121 TGTTCTTTAATATCTTCTATTATCTTTCTATTTCTTATTCGA-CTCTCTCTTTCAAGATT 179 Query 180 CCATGGAAGATCTTAACGCATTTGCAGCTGATTGCGTTGTTGTATCATGTTGTTGCAACT 239 ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| Sbjct 180 CCATGGAAGATCTTAACACATTTGCAGCTGATTGCGTCGTTGTATCGTGTTGTTGCAACT 239 Query 240 GTCTTGTGCTCCAGATCGCAATCTTCATCTTCCTTGGACTTCCTCAAAAGCTTGTCAAGA 299 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 240 GTCTTGTGCTCCAGATGGCGATCTTCATCTTCCTTGGACTTCCTCAAAAGCTTGTCAAGA 299 Query 300 ACACAAGAAAGTGTTACACAAAATGGGGGATAAATCGAAGG-ATAAAAAGAATGGGGCTT 358 ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| Sbjct 300 ACACAAGAAAGTGTTACACAAAATGGGGGATAAATCG-AGGAATAAAAAGCATGGGGCTT 358 Query 359 TGTTTTGAATGTCGAGAAAATACCGAGGTTGATTCGGAATGGAGAAAAGAGTCTATGATG 418 |||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||| Sbjct 359 TGTTGTGAATGTCGAGAAAATACCGAGGTTGATTTGGAATGGAGAAAAGAGTC--T-ATG 415 Query 419 ATGAGTATGGAGATGGAAGGTTTTGGGTGTATTGAAGAAGTTGAACAAGTC-TTAGAGGA 477 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 416 ATGAGTATGGAGATGGAAGGTTTTGGGTGTATTGAAGAAGTTGAACAAG-CTTTAGAGGA 474 Query 478 GTTTTCAAAGAATGGTGAGTTTTTGTTTGGAAGCTTCTGGGGACAAGAGAGGGTTCAAAA 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 GTTTTCAAAGAATGGTGAGTTTTTGTTTGGAAGCTTCTGGGGACAAGAGAGGGTTCAAAA 534 Query 538 TTCTTCGTCAATGTCAAATTGTGGTAATGACAACTTTGACCTAAGATTTGTAAGTCGTTA 597 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 535 TTCTTCGTCAATGTCAAGTTGTGTTAATGACAACTTTGACCTAAGATTTGTAAGTCGTTA 594 Query 598 TGAGATAATCGAAGAAAATTTCTACTCTTTGGATTATATATTCACAACTTCACATAAATT 657 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 595 TGAGATAATCGAAGAAAATTTCTACTCCTTGGATTATATATTCACAACTTCACATAAATT 654 Query 658 ATGTTGAAATTAATG-ACATAAAAGT---T-TCCACTAGG-TATTTGCTTAAATTTTAGA 711 ||||||||||||||| |||||||| | | ||||||||| | ||| || |||| Sbjct 655 ATGTTGAAATTAATGGACATAAAAATACATATCCACTAGGCTTTTTTTTTTTTTTTTTT- 713 Query 712 AATTCATAtttttttttAAACAAATGATATGCTTCAAGAAAATTTCACATAATGGA-AAC 770 ||| ||| ||||| || |||||||||||||| ||||||| |||| ||||| || || Sbjct 714 --TTCTTATATTTTT--AA-CAAATGATATGCTTTAAGAAAAATTCATATAATTGACAA- 767 Query 771 TTTCATGCTCTTTTAATATCCTCTTCAGAAAAAATTCAATATATCACAATGAATTTTGAG 830 || |||||||||||||||||| | ||| | |||||| || ||| || ||||||||||||| Sbjct 768 TTCCATGCTCTTTTAATATCCACCTCATACAAAATT-AA-ATACCATAATGAATTTTGAG 825 Query 831 TGCCAAATGGGGTTG 845 |||||||||| |||| Sbjct 826 TGCCAAATGGTGTTG 840 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31260791940 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5