BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25597.1
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484322 jgi|Araly1|484322|fgenesh2_kg.5__314__AT3G25597.1 1190 0.0
> Ahg484322 jgi|Araly1|484322|fgenesh2_kg.5__314__AT3G25597.1
Length=840
Score = 1190 bits (644), Expect = 0.0
Identities = 789/855 (92%), Gaps = 25/855 (3%)
Strand=Plus/Plus
Query 1 ATTTATTATATTTGCTTCTTTGATTAGCCTTTTCCCAATGTCTTCCTTATAGAAGCAAAG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTATTATATTTGCTTGTTTGATTAGCCTTTTCCCAATGTCTTCCTTATAGAAGCAAAG 60
Query 61 AACAAAGGAGTTCCTTCAAACAAAATATCCCAAATTACTAAAATATGTTAGGATTTAGTC 120
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 61 AACAAAGGAGTTCCTTCAAACCAAATATCCCAAATTACTAAGATATGTTAGGATTTAGTT 120
Query 121 TGTTCTTTAATTTCTTCTATTATCTTTCTATTTCTTA-CCCATCTCTCTCTTTCAAGATT 179
||||||||||| ||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 121 TGTTCTTTAATATCTTCTATTATCTTTCTATTTCTTATTCGA-CTCTCTCTTTCAAGATT 179
Query 180 CCATGGAAGATCTTAACGCATTTGCAGCTGATTGCGTTGTTGTATCATGTTGTTGCAACT 239
||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||
Sbjct 180 CCATGGAAGATCTTAACACATTTGCAGCTGATTGCGTCGTTGTATCGTGTTGTTGCAACT 239
Query 240 GTCTTGTGCTCCAGATCGCAATCTTCATCTTCCTTGGACTTCCTCAAAAGCTTGTCAAGA 299
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTCTTGTGCTCCAGATGGCGATCTTCATCTTCCTTGGACTTCCTCAAAAGCTTGTCAAGA 299
Query 300 ACACAAGAAAGTGTTACACAAAATGGGGGATAAATCGAAGG-ATAAAAAGAATGGGGCTT 358
||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 300 ACACAAGAAAGTGTTACACAAAATGGGGGATAAATCG-AGGAATAAAAAGCATGGGGCTT 358
Query 359 TGTTTTGAATGTCGAGAAAATACCGAGGTTGATTCGGAATGGAGAAAAGAGTCTATGATG 418
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 359 TGTTGTGAATGTCGAGAAAATACCGAGGTTGATTTGGAATGGAGAAAAGAGTC--T-ATG 415
Query 419 ATGAGTATGGAGATGGAAGGTTTTGGGTGTATTGAAGAAGTTGAACAAGTC-TTAGAGGA 477
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 416 ATGAGTATGGAGATGGAAGGTTTTGGGTGTATTGAAGAAGTTGAACAAG-CTTTAGAGGA 474
Query 478 GTTTTCAAAGAATGGTGAGTTTTTGTTTGGAAGCTTCTGGGGACAAGAGAGGGTTCAAAA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GTTTTCAAAGAATGGTGAGTTTTTGTTTGGAAGCTTCTGGGGACAAGAGAGGGTTCAAAA 534
Query 538 TTCTTCGTCAATGTCAAATTGTGGTAATGACAACTTTGACCTAAGATTTGTAAGTCGTTA 597
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 535 TTCTTCGTCAATGTCAAGTTGTGTTAATGACAACTTTGACCTAAGATTTGTAAGTCGTTA 594
Query 598 TGAGATAATCGAAGAAAATTTCTACTCTTTGGATTATATATTCACAACTTCACATAAATT 657
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 595 TGAGATAATCGAAGAAAATTTCTACTCCTTGGATTATATATTCACAACTTCACATAAATT 654
Query 658 ATGTTGAAATTAATG-ACATAAAAGT---T-TCCACTAGG-TATTTGCTTAAATTTTAGA 711
||||||||||||||| |||||||| | | ||||||||| | ||| || ||||
Sbjct 655 ATGTTGAAATTAATGGACATAAAAATACATATCCACTAGGCTTTTTTTTTTTTTTTTTT- 713
Query 712 AATTCATAtttttttttAAACAAATGATATGCTTCAAGAAAATTTCACATAATGGA-AAC 770
||| ||| ||||| || |||||||||||||| ||||||| |||| ||||| || ||
Sbjct 714 --TTCTTATATTTTT--AA-CAAATGATATGCTTTAAGAAAAATTCATATAATTGACAA- 767
Query 771 TTTCATGCTCTTTTAATATCCTCTTCAGAAAAAATTCAATATATCACAATGAATTTTGAG 830
|| |||||||||||||||||| | ||| | |||||| || ||| || |||||||||||||
Sbjct 768 TTCCATGCTCTTTTAATATCCACCTCATACAAAATT-AA-ATACCATAATGAATTTTGAG 825
Query 831 TGCCAAATGGGGTTG 845
|||||||||| ||||
Sbjct 826 TGCCAAATGGTGTTG 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31260791940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5