BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25600.1
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484323 jgi|Araly1|484323|fgenesh2_kg.5__315__AT3G25600.1 1003 0.0
> Ahg484323 jgi|Araly1|484323|fgenesh2_kg.5__315__AT3G25600.1
Length=674
Score = 1003 bits (543), Expect = 0.0
Identities = 641/685 (94%), Gaps = 20/685 (3%)
Strand=Plus/Plus
Query 1 CAACTTCTTCTCCAAAAACGCGGTTTCTTCGAGTTTAAGAAACTATTCATCTCCAAACTT 60
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 CAACTTCGTCTCCAAAAACGCGGTTTCTTCGACTTTAAGAAACTATTCATCTCCAAACTT 60
Query 61 TCaaaaaaaaa-cctaaaacaaaaaaaaTCTCTTTCCTTCTTCTTTCTCCATCAATGGCG 119
||||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 61 TCAAAAAAAAACCCTAAAA-TAAAAAAATCTC-TTCCTTCTTCTTCCTCCATCAATGGCG 118
Query 120 TCAACAAAACCAACCGATCAAATCAAACAACTCAAAGATATCTTCGCTCGTTTCGACATG 179
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 119 TCAACAAAACCTACCGATCAAATCAAACAACTCAAAGACATCTTCGCTCGCTTCGACATG 178
Query 180 GACAAGGACGGAAGCTTAACGCAGCTAGAACTCGCCGCTCTTCTGCGTTCTCTCGGAATC 239
||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 179 GACAACGACGGAAGCTTAACACAGCTTGAACTCGCCGCTCTTCTCCGTTCTCTCGGAATC 238
Query 240 AAACCTCGCGGCGATCAAATCTCTCTTCTGT-TGAACCAAATCGACCGTAACGGTAACGG 298
||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 239 AAACCTCGCGGCGATCAAATCTCTCTTCT-TCTCAACCAAATCGACCGTAACGGTAACGG 297
Query 299 ATCCGTAGAGTTCGACGAGCTGGTCGTGGCGATATTGCCGGATATAAACGAAGAGGTTTT 358
|||||| |||||||||||||| || || ||||||||||||||||| ||||||||||||||
Sbjct 298 ATCCGTCGAGTTCGACGAGCTCGTTGTCGCGATATTGCCGGATATTAACGAAGAGGTTTT 357
Query 359 GATAAATCAAGAACAGTTGATGGAGGTTTTCCGTTCGTTTGATCGTGACGGAAACGGTTC 418
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 358 GATTAATCAAGAACAGTTAATGGAGGTTTTCCGTTCGTTTGATCGTGACGGTAACGGTTC 417
Query 419 AATAACGGCGGCGGAACTTGCTGGGTCAATGGCTAAAATGGGACATCCGTTGACTTACCG 478
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AATCACGGCGGCGGAACTTGCTGGGTCAATGGCTAAAATGGGACATCCGTTGACTTACCG 477
Query 479 TGAATTAACGGAAATGATGACGGAAGCTGATTCTAACGGTGACGGTGTTATTAGTTTTAA 538
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGAATTAACGGAAATGATGAGGGAAGCTGATTCTAACGGTGACGGTGTTATTAGTTTTAA 537
Query 539 TGAGTTTTCTCATATTATGGCTAAATCGGCTGCTGATTTTCTTGGATTAACCGCTTCTTG 598
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 538 TGAGTTTTCTCATATTATGGCTAAATCCGCTGCTGATTTTCTTGGATTAACCGCTTCTTG 597
Query 599 AT-----CT--GTTTTGTTTTAATTACTCTCtttttttCTTCTCCTGTCAATGCAACTTG 651
|| || ||||||||||||||| ||| |||||||| || |||| |||||||||
Sbjct 598 ATTAATTCTCTGTTTTGTTTTAATTAATCT-TTTTTTTC--CT---GTCA-TGCAACTTG 650
Query 652 TGCAATTTAACAATGTGCTAATCTT 676
||||||| |||||||||||||||||
Sbjct 651 TGCAATT-AACAATGTGCTAATCTT 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26266689813
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5