BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25620.2
Length=2688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936240 jgi|Araly1|936240|scaffold_500431.1 3227 0.0
> Ahg936240 jgi|Araly1|936240|scaffold_500431.1
Length=2056
Score = 3227 bits (1747), Expect = 0.0
Identities = 1962/2064 (95%), Gaps = 21/2064 (1%)
Strand=Plus/Plus
Query 48 tctctc-tttccttctctAGATGATGCCTCCTAATGAGCAAGAATCTAGCTTTCCGAAAA 106
|||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCTCTCTTTTTC-TCTCTAGATGATGCCTCCTAATGAGCAAGAATCTAGCTTTCCGAAAA 60
Query 107 CACCGA-GCGCAAACCGACACGAAACTAGTCCGGTTCAAGAAAACCGGTTTAGCTCTCCA 165
|||| | |||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 61 CACC-AGGCGCAAACCGACACGAAACTAGTCCGGTTCAAGATAACCGGCTTAGCTCTCCA 119
Query 166 AGTCATGTAAACCCATGCCTTGACGACGATAACGACCACGACGGTCCGAGTCACCAATCA 225
|||||||||| |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 120 AGTCATGTAATCCCATGCCTT---GACGAT---GACCACGACGGTCCGAGTCACCAATCA 173
Query 226 AGACAATCTTCTGTTCTACGTCAATCTTTACGTCCTATAATCCTCAAGTTTGAGGAGTTG 285
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 174 AGACAGTCTTCTGTTCTACGTCAATCTTTACGTCCTATAATCCTCAAGTTTGAGGAATTG 233
Query 286 ACGTACAGTATCAAATCACAAACCGGGAAAGGAAGCTATTGGTTCGGTTCACAAGAACCA 345
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TCGTACAGTATAAAATCACAAACCGGGAAAGGAAGCTATTGGTTCGGTTCACAAGAACCA 293
Query 346 AAACCGAACCGGTTAGTCCTCAAATGTGTAAGTGGTATAGTCAAACCAGGGGAGTTACTA 405
||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 294 AAACCGAACCGGTTAATCCTTAACGGTGTAAGTGGTATAGTCAAACCAGGGGAGTTACTA 353
Query 406 GCAATGCTTGGTCCATCAGGGAGTGGCAAAACAACGCTAGTAACGGCGCTAGCCGGCCGT 465
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 354 GCAATGCTTGGTCCATCAGGGAGTGGCAAAACAACGCTAGTAACGGCGTTGGCCGGACGT 413
Query 466 TTACAAGGGAAGTTATCAGGAACCGTTAGCTATAACGGAGAGCCGTTTACAAGCTCAGTT 525
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 414 TTACAAGGGAAGCTATCAGGAACCGTTAGCTATAACGGAGAACCGTTTACAAGCTCCGTT 473
Query 526 AAACGGAAAACGGGGTTCGTTACACAAGACGATGTTCTCTACCCACACTTAACGGTCATG 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AAACGGAAAACGGGGTTCGTTACACAAGACGATGTTCTCTACCCACACTTAACGGTCATG 533
Query 586 GAGACGCTAACGTACACGGCTTTGCTCCGTTTACCAAAAGAGTTGACCCGGAAAGAGAA- 644
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 534 GAGACGCTAACGTACACGGCTTTGCTCCGTTTACCTAAAGAGCTGACCCGGAAAGAGAAG 593
Query 645 ACTAGAGCAGGTGGAGATGGTGGTTTCGGATCTTGGGTTGACCCGGTGTTGTAACAGTGT 704
| ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 594 A-TAGAGCAGGCGGAGACAGTGCTTTCGGATCTTGGGTTGACCCGGTGTTGTAACAGTGT 652
Query 705 TATCGGAGGCGGGTTGATCCGAGGAATTTCGGGTGGGGAAAGGAAACGGGTAAGTATTGG 764
|| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 653 AATAGGAGGCGGGTTGATCCGAGGAATTTCCGGTGGGGAAAGAAAACGGGTAAGTATTGG 712
Query 765 ACAAGAAATGCTAGTGAATCCGAGTTTGTTGCTTCTTGATGAGCCAACGTCGGGGCTTGA 824
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 713 ACAAGAAATGCTTGTGAACCCAAGTTTGTTGCTTCTTGATGAGCCAACGTCGGGGCTTGA 772
Query 825 TTCTACCACGGCGGCT-CGTATAGTCGCCACCTTGAGATCGCTAGCACGTGGTGGTCGGA 883
||| |||||||||| | || ||||||||||||||||||||||| ||||| || || ||||
Sbjct 773 TTCAACCACGGCGG-TGCGAATAGTCGCCACCTTGAGATCGCTGGCACGCGGCGGCCGGA 831
Query 884 CGGTGGTGACGACGATTCATCAGCCGTCGAGTAGGCTTTATCGGATGTTCGATAAAGTGT 943
|||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 832 CGGTTGTTACGACGATTCATCAGCCGTCGAGTCGGCTTTATCGGATGTTTGATAAAGTGT 891
Query 944 TGGTTTTATCGGAAGGGTGTCCTATTTATAGTGGAGATTCGGGTCGGGTCATGGAATATT 1003
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 892 TGGTTTTATCAGAAGGATGTCCTATTTATAGTGGGGATTCGGGTCGGGTCATGGAGTATT 951
Query 1004 TTGGTTCGATTGGGTATCAACCCGGATCCAGTTTCGTTAACCCGGCTGA-TTTCGTGCTT 1062
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 952 TTGGTTCGATTGGGTATCAACCCGGATCCAGTTTCGTTAACCCAGCTGACTTT-GTGCTA 1010
Query 1063 GATCTTGCTAACGGAATTACTTCGGATACAAAACAATATGATCAAATCGAAACT-AATGG 1121
||||||||||||||||||||||||||||||| ||||||||||||| |||||| | |||||
Sbjct 1011 GATCTTGCTAACGGAATTACTTCGGATACAATACAATATGATCAAGTCGAAA-TAAATGG 1069
Query 1122 AAGATTAGATCGGCTTGAAGAACAAAACTCAGTGAAACAATCGTTAATATCGTCATACAA 1181
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1070 AAGATTAGATCGGCTTGAAGAACAAAACTCCGTGAAACAATCGTTAATATCGTCTTACAA 1129
Query 1182 AAAGAATTTGTATCCACCTTTGAAAGAAGAAGTGTCTAGAACGTTTCCACAAGATCAAAC 1241
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1130 AAAGAATTTGTATCCACCTCTGAAAGAAGAAGTGTCTAGAACATTTCCACAAGATCAAAC 1189
Query 1242 GAACGCTAGATTGAGAAAAAAGGCA--A-TAACAAATCGATGGCCAACGAGTTGGTGGAT 1298
|| | |||||| ||||| |||| || | |||| ||||||||||||||||||||||||||
Sbjct 1190 GATCACTAGATCGAGAACAAAGTCATTATTAACCAATCGATGGCCAACGAGTTGGTGGAT 1249
Query 1299 GCAATTCTCAGTTCTACTGAAACGAGGTTTAAAAGAGAGAAGTCACGAATCATTTTCAGG 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GCAATTCTCAGTTCTACTGAAACGAGGTTTAAAAGAGAGAAGTCACGAATCATTTTCAGG 1309
Query 1359 ACTCAGAATATTTATGGTCATGTCAGTTTCTTTACTTTCAGGCCTCTTGTGGTGGCATTC 1418
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1310 ACTTAGAATATTTATGGTCATGTCAGTTTCTTTACTTTCTGGCCTCTTATGGTGGCATTC 1369
Query 1419 TCGCGTTGCTCATTTACAAGATCAGGTGGGTTTATTGTTCTTCTTCTCGATATTTTGGGG 1478
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 TCGCGTTGCTCACTTACAAGATCAGGTGGGTTTATTGTTCTTCTTCTCGATATTTTGGGG 1429
Query 1479 ATTCTTCCCTCTCTTTAACGCCATTTTTACATTCCCTCAAGAACGACCAATGCTTATAAA 1538
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1430 ATTCTTCCCTCTCTTCAACGCCATTTTTACATTCCCTCAAGAACGACCGATGCTTATAAA 1489
Query 1539 AGAGCGATCCTCGGGAATCTACAGGCTCTCCTCTTACTATATAGCAAGAACAGTCGGCGA 1598
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1490 AGAGCGATCCTCCGGAATCTACAGACTCTCCTCTTACTACATAGCAAGAACAGTCGGCGA 1549
Query 1599 TTTACCAATGGAACTCATTCTTCCAACGATATTTGTCACAATCACATATTGGATGGGAGG 1658
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1550 TTTACCAATGGAACTCATTCTTCCAACGATCTTTGTCACAATCACATATTGGATGGGAGG 1609
Query 1659 TCTTAAGCCATCTTTAACCACATTCATCATGACCCTTATGATCGTTCTCTACAATGTTCT 1718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 CCTTAAGCCATCTTTAACCACATTCATCATGACCCTTATGATCGTTCTCTACAATGTTCT 1669
Query 1719 AGTAGCTCAAGGCGTAGGGTTAGCTCTAGGAGCAATCTTGATGGACGCAAAGAAAGCCGC 1778
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 AGTGGCTCAAGGCGTAGGGTTAGCTCTAGGAGCAATCTTGATGGACGCAAAGAAAGCCGC 1729
Query 1779 GACATTGTCTTCGGTGTTAATGCTAGTGTTCTTACTAGCCGGAGGATACTATATTCAACA 1838
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1730 GACATTGTCTTCGGTGTTAATGCTAGTGTTCTTACTAGCCGGAGGGTACTATATTCAACA 1789
Query 1839 TATTCCGGGTTTCATCGCGTGGTTGAAGTATGTTTCGTTTAGCCATTATTGCTATAAGCT 1898
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1790 TATTCCGGGTTTTATCGCGTGGTTGAAGTATGTTTCGTTTAGCCACTATTGCTATAAGCT 1849
Query 1899 TCTTGTTGGGGTTCAATACACATGGGATGAGGTTTATGAATGTGGGTCAGGGTTGCATTG 1958
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1850 TCTTGTTGGGGTTCAATACACATGGGGTGAGGTTTATGAATGTGGATCAGGGTTGCATTG 1909
Query 1959 TAGTGTTATGGATTACGAAGGGATTAAGAATTTGAGAATCGGGAATATGATGTGGGATGT 2018
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1910 TAGTGTTATGGATTATGAAGGGATTAGGAATTTGAGAATCGGGAATATGATGTGGGATGT 1969
Query 2019 TTTGGCTCTTGCCGTTATGTTGCTTCTTTATAGGGTTTTAGCTTACTTAGCTCTAAGGAA 2078
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1970 TTTGGCTCTTGCCATTATGTTGCTTCTTTATAGGGTTCTAGCTTACTTAGCTCTAAGAAA 2029
Query 2079 CTTGTGACACCTTTTAATCTGTGT 2102
||||||||||||||||||||||||
Sbjct 2030 CTTGTGACACCTTTTAATCTGTGT 2053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101396232190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5