BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G25655.1

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484327 jgi|Araly1|484327|fgenesh2_kg.5__319__AT3G25655.1          649    0.0  


> Ahg484327 jgi|Araly1|484327|fgenesh2_kg.5__319__AT3G25655.1
Length=464

 Score =  649 bits (351),  Expect = 0.0
 Identities = 436/474 (92%), Gaps = 18/474 (4%)
 Strand=Plus/Plus

Query  1    AAACCGCCTTCTTAAAATCCAAAATTTAT-AAAACCCTAGCTAATAGCTAAATTAGTGTC  59
            ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||  
Sbjct  1    AAACCGCCTTCTTAAAATCCAAAATTTATAAAAACCCTAGCTAGTAGCTAAATTAATG--  58

Query  60   TCCTCCTCCTTATTCTTCTTCTTTCTCCGAACATTATATGAATCTTTCTCATAAAACCAT  119
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59   T-CTCCTCCTTATTCTTCTTCTTTCTCCGAACATTATATGAATCTTTCTCATAAAACCAT  117

Query  120  GTTTATGACTCTTTATATTGTTTTCCTCTTGATTTTTGGTTCATACAACGCCACGGCAAG  179
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  118  GTTTATGACTCTTTATATTGTTTTCCTCTTGGTTTTTGGTTCATACAACGCCACGGCAAG  177

Query  180  GAT---CGGACCGATTAAGCTTTCTGAAACGGAAA-TAGTTCAAACAAGATCAAGACAAG  235
            |||   ||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct  178  GATGATCGGACCGATTAAGCTTTCTGAAACG-ACACTAGTTCAAACAAGATCAAGACAAG  236

Query  236  A-GA--TCATTGGGGGTTTTACATTCAAAGGTCGTGTGTTCCATTCATTTTCTAAAAGGG  292
            | ||  ||||||||||||||| ||||||||||||||||||||||| |||||| ||||  |
Sbjct  237  AAGAGATCATTGGGGGTTTTAGATTCAAAGGTCGTGTGTTCCATTTATTTTCAAAAAAAG  296

Query  293  TACTTGTACCACCTTCGGGACCTTCCATGAGACATAATTCTGTGGTGAATAATCTCAAAC  352
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  297  TACTTGTACCACCTTCGGGACCTTCCATGAGGCATAATTCTGTGGTGAATAATCTCAAAC  356

Query  353  ACTAACTGttttttttttCTTTTGGTTTAATTTCAATCTCTTAGGATTTGCTTCAAAAAT  412
            ||||||||  |||| |  ||||||||||| |||||||||||||| ||||||||  |   |
Sbjct  357  ACTAACTGAATTTTAT--CTTTTGGTTTACTTTCAATCTCTTAGAATTTGCTTTGATT-T  413

Query  413  TTTTTGACAATTACATGAAATTGTATTTCGAAAAGATTCTTAAAGTTGTATTTA  466
            |||||||||||||  ||||||||||||| |||| ||||||||||||||||||||
Sbjct  414  TTTTTGACAATTA--TGAAATTGTATTTAGAAA-GATTCTTAAAGTTGTATTTA  464



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19459350390


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5