BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25680.1
Length=1927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936247 jgi|Araly1|936247|scaffold_500438.1 2571 0.0
> Ahg936247 jgi|Araly1|936247|scaffold_500438.1
Length=1720
Score = 2571 bits (1392), Expect = 0.0
Identities = 1621/1730 (94%), Gaps = 22/1730 (1%)
Strand=Plus/Plus
Query 61 AACCCTAATTCTCCTGAC-A-AAATGAGCTCTTTCTCAGTTAAAAAGTCCCCAAATTCTT 118
|||||||||||||| ||| | |||||||||||||||| ||||||||||| |||| ||| |
Sbjct 1 AACCCTAATTCTCCAGACAAGAAATGAGCTCTTTCTCCGTTAAAAAGTCTCCAACTTCAT 60
Query 119 CCTTCCTCTTCCCAAAAATCACACCTTTACTTATACGACATCGTCTCACTCTCCCATTAC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTTCCTCTTCCCAAAAATCACACCTTTACTTATACGACATCGTCTCACTCTCCCATTAC 120
Query 179 TAGTTCCTCCTCACAAACCACCAAGATTCCGCATCGTTGCTTCTCTCTCCGGTACTTCAT 238
| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 121 TCGTTCCTCCTCACAAACCACCAAGATTCCGCATCGTCGCGTCTCTCTCTGGTACTTCAT 180
Query 239 GGGTCTCTCAAGCTTCTCAAGACAAATATGGTGGTTGGGCTCTTGCTGAAGATG-A-AA- 295
|||| |||||||||||| |||| |||||||||||||||||||||| |||||||| | ||
Sbjct 181 GGGTTTCTCAAGCTTCTAAAGAAAAATATGGTGGTTGGGCTCTTGTTGAAGATGAAGAAC 240
Query 296 CTCCTTCTCCTCATTCGATAACTaaaaaaaaGTGGAGGAATGTTGTAATCACTGGTGTTG 355
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCCTTCTCCTCATTCGAAAACTAAAAAAAAGTGGAGGAATGTTGTAATCACTGGTGTTG 300
Query 356 GATCGTCACTTGCTGTTGTATTAGCTACTATTGCTTACTTCTCAATCTCCAGAAAAGGTT 415
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GATCGTCACTTGCTGTTGTATTAACTACTATTGCTTACTTCTCAATCTCCAGAAAAGGTT 360
Query 416 TTAGGTTTAGCTTTAGTAATCTATTGCAATATCAAAATGTGGAATTGGATCAGAATGATA 475
|||||||| |||||||||||| |||||| ||||| |||||||||||||||||||||| ||
Sbjct 361 TTAGGTTTTGCTTTAGTAATCCATTGCATTATCAGAATGTGGAATTGGATCAGAATGCTA 420
Query 476 ATGAAGAGAGTGAAACTCTGTTCAATGATGAGAACAATTCTCCTTCTGAGGCTAACTCTG 535
||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct 421 ATGAAGAGAGTGAAACTCTACTCAATGATGAGAGTAATTCTGTTTCTGAGGCTAACTCTG 480
Query 536 AAAGCGTTGACTATGTTTCAGATAATGTTGACTCAACATCAACCGGAAAAACTCACCGTG 595
|||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||
Sbjct 481 AAAGCGTTGACTATGTTTCAGATACTGTTGACACCACATCAACCGGAAAAACCCACCGTG 540
Query 596 TCGCTACTCCGGTTGCTGTGGATGCTGCTCAACAGGAAGCAATAGCAGTTTTAAAGAAAC 655
|| | | ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 TCACCATTCCGGTTGCTGTGGATGCTGCTCAACAAGAAGCAATAGCAGTTTTAAAGAAAC 600
Query 656 TAAAGAT-ATATGAAGATGATATAGTGGCAGACGAGTTGTGTACTAAACGAGAGTATGCT 714
||||||| || |||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 601 TAAAGATAAT-TGAAGATGATGTAGTGGCAGACGAGTTGTGTACTAGACGAGAGTATGCT 659
Query 715 AGATGGCTAGTTCGTTCTAATTCGTTATTAGAGAGAAATCCAATGCACATGATTGTGCCA 774
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 660 AGATGGCTAGTTCGTTCTAATTTGTTATTAGAGAGAAATCCAATGCACAGGATTGTGCCA 719
Query 775 GCAGTAGCTTTAGCTGGCTCTTCTATTCCTGCATTTGACGATATAAATACCTCAGACCCT 834
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 720 GCAGTAGCTTTAGCTGGCTCTTCAATTCCTGCATTTGACGATATAAATACCGCAGACCCT 779
Query 835 GACTTCGAGTACATTCAAGCCTTGGCAGAGGCAGGCATTACTTCCAGCAAGCTCA-GCGG 893
||||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||
Sbjct 780 GACTTCGAGTACATTCAAGCCCTGGCAGAGGCAGGCATTACTTCAAGCAAGCT-ATCCGG 838
Query 894 AGAAGATTCTCGAAATGACTT-GGGAAACAGTAATTT-TAATCCTGAAAGTTTTGTCTCC 951
| ||||||||| |||||| || |||||||| |||||| | | |||||||||||||| |||
Sbjct 839 AAAAGATTCTCAAAATGA-TTCGGGAAACAATAATTTCT-ACCCTGAAAGTTTTGTTTCC 896
Query 952 CGACTCGATTTGGTTAACTGGAAAGCTCAGTTGGAGTGTGGTTTCCATCCAGAAATTATG 1011
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 897 CGACTCGATTTGGTTAACTGGAAAGCTCAATTGGAGTGTGGTTTTCATCCAGAAATTATG 956
Query 1012 GAAGAGATATCAAGGACAAAGGTCGACTATATAGACACGAAGAATATCAATCCCGATATG 1071
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 957 GAAGAGATATCAAGGACAAAGGTAGACTATATAGACACGAAGAATATCAATCCTGATATG 1016
Query 1072 GCTCTCGGATTCTTCTTGGACTTCTTGATGGGTGACAAGAGTACGATCAGAAACGTTTTT 1131
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1017 GCTCTCGGATTCTTCTTGGACTTCTTGACGGGTGACAAGAGTACGATCAGAAACGTTTTT 1076
Query 1132 GGTAGGATCAAGCGGTTTCAGCCAAATAGACCTGTTACGAAAGCACAAGCAGCTGTAGCA 1191
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1077 GGTAGGATCAAGCGGTTTCAGCCAAATAGACCTGTTACAAAAGCACAAGCAGCTGTAGCA 1136
Query 1192 TTAACAAGCGGTAAAATGGTGAAAGCTATCACAGCAG-AGCTATCAAGGTTAGAAGCAGA 1250
|||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||
Sbjct 1137 TTAACAAGCGGTAAAATGGTAAAAGCTATTTCAG-AGGAGCTATCAAGGTTAGAAGCAGA 1195
Query 1251 GTCCCTCTCGCAGAAAGCTGAGACAGAAGAAATCAGATCGGAATTGCTAGAAAAAGGCGA 1310
||| ||||||||||||||||||||||||||||||||||| || |||||| ||| |||||
Sbjct 1196 GTCGCTCTCGCAGAAAGCTGAGACAGAAGAAATCAGATCCGAGTTGCTA-AAA--GGCGA 1252
Query 1311 GATAAGGCAATTTTGGGATGAGAAGATTCAGGCAGAGAGATCCCGAGGATTTGAGATGGA 1370
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1253 AATAAGGCAATTTTGGGATGAGAAGATTCAGGCAGAGAGATCCCGAGGAGTTGAGATGGA 1312
Query 1371 AGAGCTGTATCTCTCTAGAGTTAATGAAGTAGAAGAAGAAAAAACCACTCAGGAGAAGTG 1430
||||||| |||| || ||||||| |||| ||||||||||||||| |||||||||||||||
Sbjct 1313 AGAGCTGCATCTATCCAGAGTTAGTGAATTAGAAGAAGAAAAAAACACTCAGGAGAAGTG 1372
Query 1431 GT-CTGCGGAGCGTTTGAAAGAGAAAGCAGCCATAGACTGTCAGAAACAGTTGCTTAATA 1489
|| | || |||||||||||||| |||||||||| ||| |||||||||||||||||| |||
Sbjct 1373 GTTC-GCCGAGCGTTTGAAAGAAAAAGCAGCCACAGATTGTCAGAAACAGTTGCTTCATA 1431
Query 1490 GCTTGACTGAGGAGATTGATGAGATGTCTCAGAGGCTAATATCTGATAAATCTGTTTATC 1549
|||||| || ||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1432 GCTTGAGTGGGGAGATTGATGAGATGTCTCAGAGGCTAATATCCGATAAGTCTGTTTATC 1491
Query 1550 TGACTGAACACAGCAAGTTACAAGAGATGCTAAGTGACTTACAATCAAAACTTGAATCGC 1609
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1492 TAACTGAACACAGCAAGTTACAAGAGATGCTAAGTGACTTACAATCTAAACTTGAATCAC 1551
Query 1610 TTATCGACAAAAGATCTATCCTCGAAGCTGAAGTCGAAGCTCTTCGGATACTAAGATCTT 1669
|| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1552 TTGTCGACAAAAGATCTATCCTAGAAGCTGAAGTCGAAGCTCTTCGGATTCTAAGATCTT 1611
Query 1670 GGATAGAGGATGAAGGTAAGGCAAGCCAAGCCAGAGCTAAGGTTCTCGAAGAAGCGGGAC 1729
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1612 GGATAGAGGATGAAGCTAAGGCAAGCCAAGCCAGAGCTAAGGTTCTCGAAGAAGCTGGAC 1671
Query 1730 GAAGATGGAAATGGAACGAT-AATGCTTGAATCTTTCTTCAGATTGTACA 1778
||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 1672 GAAGATGGAAATGGAACGACCAA-GCTTAAATCTTTCTTCAGATTGTACA 1720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72409555745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5