BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25700.1
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484331 jgi|Araly1|484331|fgenesh2_kg.5__323__AT3G25700.1 2518 0.0
> Ahg484331 jgi|Araly1|484331|fgenesh2_kg.5__323__AT3G25700.1
Length=1722
Score = 2518 bits (1363), Expect = 0.0
Identities = 1613/1731 (93%), Gaps = 28/1731 (2%)
Strand=Plus/Plus
Query 9 AGAGTTTTATTACAAAAGCCAAAGCTTTATTTTTGATACCCCCCAAAAACAGATATCTTT 68
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 AGAGTTTTATTGCAAAATCCAAAGCTTTATTTTTGATACCCCCC-AAAACAGATATCTTT 59
Query 69 CAGTCTTCACGTTGCAATATACTCACATTTCGACCACATACTGACAAAAACTCCGTATAT 128
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 60 CAGTCTTCACGTTGCAATGCACTCACATTTCGACCACATACTGACAAAAACT-CGTATAC 118
Query 129 ATATACGTATAAAAATACGGtcttcttcttcttcttcatctcttACAA-ACACAGACACA 187
|||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 119 ATATACGTATAAAAATACACTCTTCTTCTTCTTCTTCATCTCTTAAAACACACAGACACA 178
Query 188 AA-AATCACAAAACccttctca---------ctctctctcaatgtttcctctcatcttct 237
|| || |||||||||||||||| ||||||||||||||||||||| | || |
Sbjct 179 AACAA-CACAAAACCCTTCTCACTCTCTCTCCTCTCTCTCAATGTTTCCTCT--TATT-T 234
Query 238 tcctctgttctttcctctctcttttcctcctccCGCCGTCAAATATCGCCGCCGTGAGTA 297
|||||| |||||||||||||| ||||||||||| ||| | ||| |||||||||||||||
Sbjct 235 ACCTCTGCTCTTTCCTCTCTCTCTTCCTCCTCCCACCGGCGAATCTCGCCGCCGTGAGTA 294
Query 298 ACCACAACAAA-TACCTAAAGCTTCCACTACTACGCAAATCTCCGTTTCCTTCTCCAACA 356
|| || | ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 295 ACGAC-AGAAAGTACCTAAAGCTTCCATTACTACGTAAATCTCCGTTTCCTTCTCCAACA 353
Query 357 CAAGCTCTAGCTTTAGACACTCGCCGTCTCCATTTTCTCTCTCTCCGTAGAAAACCAATC 416
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||
Sbjct 354 CAAGCTCTAGCTTTAGACAGTCGCCGTCTCCATTTTCTCTCTCTCCGTCGAAAACCCATC 413
Query 417 CCATTCGTCAAATCTCCGGTGGTCTCCGGCGCAGCTTCCGGGTCGGGTCAATACTTTGTG 476
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 414 CCATTCGTCAAATCTCCGGTTATCTCCGGCGCATCTTCCGGGTCGGGTCAATACTTTGTG 473
Query 477 GATCTTCGTATCGGACAACCGCCTCAATCGTTACTTCTGATCGCCGACACAGGAAGCGAT 536
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 474 GATCTTCGAATCGGACAACCGCCTCAATCGTTACTTCTAATCGCCGACACAGGAAGTGAT 533
Query 537 CTCGTTTGGGTTAAATGTTCAGCTTGCCGGAACTGTTCTCATCATTCTCCGGCCACCGTC 596
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CTCGTTTGGGTAAAATGTTCAGCTTGCCGGAACTGTTCTCATCATTCTCCGGCCACCGTC 593
Query 597 TTCTTCCCTCGCCACTCCTCAACATTCTCTCCCGCCCATTGCTACGACCCGGTTTGTCGT 656
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 594 TTCTTCCCTCGCCACTCTTCCACATTCTCTCCCGCTCATTGCTACGACCCGGTTTGTCGT 653
Query 657 TTAGTACCTAAACCGGATCGAGCTCCGATATGTAACCATACCCGGATCCATTCCACGTGT 716
|||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 654 TTAGCACCTAAACCGGGTCGGGCTCCGAGATGTAACCATACCCGGATCCATTCCACGTGT 713
Query 717 CATTACGAGTATGGTTACGCTGACGGTTCATTAACTTCCGGTTTATTCGCTAGAGAAACG 776
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 714 CCTTACGAGTATGGTTACGCAGACGGTTCATTAACTTCCGGTTTATTCGCTAGAGAAACG 773
Query 777 ACGTCGTTGAAAACAAGCTCTGGTAAAGAAGCGAGGTTAAAAAGCGTTGCTTTTGGATGC 836
||||||||||| |||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct 774 ACGTCGTTGAAGACAAGCTCTGGTAAAGAAGCCAAGTTAAAAAGCGTTGCTTTCGGATGC 833
Query 837 GGGTTTCGGATCTCGGGTCAATCCGTATCAGGTACGAGTTTCAATGGAGCCAATGGAGTA 896
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 834 GGGTTTCGGATCTCGGGTCAATCCGTATCGGGTACGAGTTTTAATGGAGCCAATGGAGTA 893
Query 897 ATGGGCTTGGGCCGTGGGCCTATTTCTTTTGCTTCTCAGTTGGGCCGTCGTTTTGGTAAC 956
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 894 ATGGGCTTGGGCCGTGGGCCTATTTCGTTTGCTTCTCAGTTGGGCCGTCGTTTTGGTAAC 953
Query 957 AAGTTTTCTTATTGCTTAATGGATTACACACTCTCTCCGCCGCCGACGAGTTATCTCATC 1016
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 954 AAGTTTTCTTATTGCTTAATGGATTACACTCTCTCTCCGCCGCCGACGAGTTATCTCATC 1013
Query 1017 ATCGGTA-ACGGCGGCGACGGCATTTCAAAGCTTTTCTTCACTCCGTTGCTCACGAATCC 1075
||||| | |||||||||||| | |||| |||||||||||||||||||||||||| |||||
Sbjct 1014 ATCGG-AGACGGCGGCGACGCCGTTTCGAAGCTTTTCTTCACTCCGTTGCTCACAAATCC 1072
Query 1076 GTTATCGCCAACTTTTTACTACGTTAAATTAAAATCTGTTTTCGTTAACGGTGCGAAATT 1135
||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1073 GTTATCGCCGACTTTTTACTACGTTAAATTGAATTCTGTCTTCGTTAACGGTGCGAAATT 1132
Query 1136 ACGAATCGATCCTTCAATTTGGGAAATCGATGATTCAGGTAACGGCGGAACCGTCGTGGA 1195
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1133 ACGGATCGATCCTTCAATTTGGGAAATCGACGATTCAGGTAACGGCGGAACCGTCGTGGA 1192
Query 1196 TTCCGGCACAACCTTAGCGTTTTTAGCTGAACCGGCGTATCGATCGGTTATCGCCGCCGT 1255
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1193 CTCCGGCACAACCTTAGCGTTTTTAGCTGATCCGGCGTATCGATTGGTTATCGCCGCCGT 1252
Query 1256 GAGACGACGGGTAAAGCTCCCTATCGCTGATGCGCTGACTCCGGGGTTTGATTTATGCGT 1315
|| || |||| | |||||||||| ||| |||| ||| |||||||| || |||||||||||
Sbjct 1253 GAAACAACGGATGAAGCTCCCTAACGCCGATGAGCTCACTCCGGGATTCGATTTATGCGT 1312
Query 1316 TAACGTCTCCGGCGTCACGAAACCGGAAAAGATATTACCGAGGTTGAAATTTGAATTCTC 1375
||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct 1313 TAACGTCTCCGGCGTTTCGAAACCGGAAAAGACATTGCCGAGGTTGAAATTCGAATTCTC 1372
Query 1376 CGGTGGTGCTGTGTTTGTTCCGCCGCCGAGGAATTACTTTATTGAGACGGAGGAGCAGAT 1435
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1373 CGGTGGTGCTGTGTTTGTTCCGCCGCCGAGGAATTACTTTATTGAGACGGAGGATCAGAT 1432
Query 1436 TCAGTGTCTGGCGATTCAATCGGTGGATCCGAAAGTTGGATTTTCAGTGATTGGGAATTT 1495
||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1433 TCAGTGTTTGGCGATTCAATCGGTGGATCCGAAAGTTGGATTCTCGGTGATCGGGAATTT 1492
Query 1496 GATGCAACAAGGTTTCTTGTTTGAATTCGATAGAGATAGATCACGGTTAGGTTTTTCTCG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 GATGCAACAAGGTTTCTTGTTTGAATTCGATAGAGATAGATCACGGTTAGGTTTTTCTCG 1552
Query 1556 TCGTGGTTGTGC-TCTGCCGTGAAGGATTTTACACTGGAATATTCCTTTTCGATTCGCAT 1614
|||||||||||| || |||||| ||||||| ||| |||||||||| ||||||||||| |
Sbjct 1553 TCGTGGTTGTGCATCA-CCGTGATGGATTTTTCACCGGAATATTCCGTTTCGATTCGCTT 1611
Query 1615 AAAGATTCtttt-t-tt-tttt--GGAAGTACGAAACGTAGGTGACGGTTCACTGTTACC 1669
|||||||||||| | || |||| |||||||||||| | ||||||||||||||||||||
Sbjct 1612 AAAGATTCTTTTATATTGTTTTTTGGAAGTACGAAATTTGGGTGACGGTTCACTGTTACC 1671
Query 1670 GAAAATAGAAATAAAATAATCTTTTTGGAGTTTGTATAATTTCGATTaaaa 1720
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1672 GAAAATAGAAATAAAATAATCTTTTTGGAGTTTGTATAATTTCAATTAAAA 1722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65477131155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5