BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25710.1
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484332 jgi|Araly1|484332|fgenesh2_kg.5__324__AT3G25710.1 1358 0.0
Ahg476008 jgi|Araly1|476008|fgenesh2_kg.2__1138__AT1G68810.1 215 8e-55
> Ahg484332 jgi|Araly1|484332|fgenesh2_kg.5__324__AT3G25710.1
Length=1350
Score = 1358 bits (735), Expect = 0.0
Identities = 824/865 (95%), Gaps = 13/865 (2%)
Strand=Plus/Plus
Query 1 GGGATGTTTGTGACCTTTTGTCTCTTCTTCTCTAAAATTCTCTTTCT-C--CCaaaaact 57
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 1 GGGATGTTTGTGACCTTTTGTCTCTTCTTCTCT--AATTCTCTTTCTCCTTCCAAAAA-A 57
Query 58 aaaaaaccaaaaaaaccaaaaaaTGTACGCAATGAAAGAAGAAGACTGTCTTCAAACATT 117
|||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 58 AAAAAAAAAAAAAAACC-AAAAATGTATGCAATGAAAGAAGAAGACTGTCTTCAAACGTT 116
Query 118 TCACAACTTACAAGACTATCAAGACCAGTTTCATCTTCATCATCATCCACAAATTCTCCC 177
||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |||||
Sbjct 117 TCACAACCTACAAGACTATCAAGACCAGTTTCTTCTTCATCACCATCCACAAATCCTCCC 176
Query 178 CTGGTCGTCGACATCTTTACCTTCTTTTGACCC-ACTCCATTTCCCATCTAACCCGACCC 236
|||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 177 TTGGTCGTCTACATCTTTACCTTCTTTTGACCCGAC-CCATTTCCCATCTAACCCGACCC 235
Query 237 GTTATTCTGACCCGGTTCACTACTTCAACAGAAGAGCTTCTTCTTCCTCTTCTTCTTTTG 296
||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||
Sbjct 236 GTTATTCTGACCCGGTTCACTACTTTAACAGAAGAG---CTTCTTCCTCTTCTTCCTTTG 292
Query 297 ACTATAACGACGGTTTTGTCTCTCCTCCTCCTTCCATGGATCATCCTCAGAACCATCTAA 356
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 293 ACTATAACGACGGCTTTGTCTCTCCTCCTCCTTCCATGGATCATCATCAGAACCATCTAA 352
Query 357 GGATTTTATCCGAAGCTCTTGGACCCATCATGCGTCGTGGCTCGTCCTTTGGGTTCGATG 416
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 353 GGATTTTATCCGAAGCTCTTGGTCCCATCATGCGTCGTGGCTCGTCCTTTGGGTTCGATG 412
Query 417 GTGAGATCATGGGAAAATTGAGTGCACAAGAAGTCATGGATGCTAAGGCTTTAGCTGCTT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 413 GTGAGATCATGGGAAAATTGAGTGCACAAGAAGTCATGGATGCTAAGGCTTTAGCAGCTT 472
Query 477 CAAAGAGTCATAGTGAAGCTGAGAGAAGAAGACGAGAGAGAATCAACACTCATCTTGCTA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 CAAAGAGTCATAGTGAAGCTGAGAGAAGAAGACGAGAGAGAATCAACACTCATCTTGCTA 532
Query 537 AGCTGCGTAGTATATTACCAAACACAACCAAAACGGACAAAGCTTCTTTGCTAGCGGAAG 596
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 AGTTGCGTAGTATATTACCAAACACAACCAAAACGGACAAAGCTTCTTTGCTAGCGGAAG 592
Query 597 TGATCCAACACATGAAGGAGCTAAAACGACAAACATCACAGATCACCGACACGTATCAAG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TGATCCAACACATGAAGGAGCTAAAACGACAAACATCACAGATCACCGACACGTATCAAG 652
Query 657 TCCCAACAGAGTGCGATGATCTGACCGTAGATTCGTCTTACAACGACGAGGAAGGAAACT 716
||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||
Sbjct 653 TCCCAACAGAGTGCGATGACCTGACCGTCGAATCGTCTTACAACGACGAAGAAGGAAACT 712
Query 717 TGGTGATAAGAGCATCCTTTTGCTGCCAAGACAGGACTGACCTCATGCATGACGTCATCA 776
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 713 TGGTGATAAGGGCATCCTTTTGCTGCCAGGACAGGACTGACCTCATGCATGACGTCATCA 772
Query 777 ATGCCTTAAAGTCTCTTCGTCTTCGAACTCTCAAAGCTGAGATCGCAACCGTAGGTGG-T 835
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 773 ATGCCTTAAAGTCTCTTCGTCTTCGAACTCTCAAAGCTGAGATCGCAACCGTTGGTGGGT 832
Query 836 AGAGTCAAGAACATCTTGTTCTTGA 860
||||||||||||||||| || |||
Sbjct 833 CGAGTCAAGAACATCTTGATCATGA 857
Score = 741 bits (401), Expect = 0.0
Identities = 474/508 (93%), Gaps = 9/508 (2%)
Strand=Plus/Plus
Query 884 GATCATGATTCATATCGTAGAAACTTCGATGGTGATGACGTGGAGGATTATGATGAAGAG 943
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 850 GATCATGATTCATATCATAGAAACTTCGATGGTGATGACGTGGAGGCTTATGATGAAGAG 909
Query 944 AGGATGATGAATAATCGTGTGAGTTCGATAGAAGAAGCGTTAAAGGCGGTTATAGAGAAG 1003
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 910 AGGATGATGAATGATCGTGTGAGTGCGATAGAAGAAGCGTTAAAGGCGGTTATAGAGAAG 969
Query 1004 TGTGTTCATAATAATGATGAAAGTAACGATAACAATAACTTGGAGAAATCATCTTCAGGG 1063
|||||||||||||||| ||| || || |||||||||||||||||||||||||||||||||
Sbjct 970 TGTGTTCATAATAATGGTGAGAGCAATGATAACAATAACTTGGAGAAATCATCTTCAGGG 1029
Query 1064 GGTATTAAGAGGCAAAGGACTAGTAAGATGGTGAATCGATGTTATAATTAGTTAATTAAG 1123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 AGTATTAAGAGGCAAAGGACTAGTAAGATGGTGAATCGATGTTATAATTAGTTAATTAAG 1089
Query 1124 TCAAGTCTTTATTAACTAGGGTTAGTTAATTAGACTTGCAAAATGGGATTTGATTATGGG 1183
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1090 TCAAGTCTTTATTAATTAGGGTTAGTTAATTAGACTTGCAAAATGGGATT-GATTATGGG 1148
Query 1184 TTGGTGATATTAGTATTATTTTCGGTGTTTTT-AGTAGTTGGGATTGGGTTTCTTCTTCT 1242
|||||||||| ||| |||| | ||||| | || ||||||||||||||||||||||
Sbjct 1149 TTGGTGATATCCTTATGGTTTTTATTTTTTTTTA-TAATTGGGATTGGGTTTCTTCTTCT 1207
Query 1243 ATGttttttt-AATCTATGAAGAACCCTTTGTTTAGGGTTTTATAGTGATGAGTTTGGTT 1301
|||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1208 ATGTTTTTTTTAATCTATGAAGAACCCTCTGTTTAGGGTTTTATAGTGATGGGTTTGGTT 1267
Query 1302 TATATATGGTAGTTAAGACATTTTATCGTCTTAATTAATATAGGAAATGTATAGAGCTTG 1361
|||||| | | | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1268 TATATA-G-T--T-AAGACATTTTATCGTCTTAATTAATATAGGAAATGTAAAGAGCTTG 1322
Query 1362 GGTTTGTATTAATTTATCAAGAAGTTTT 1389
|||||||||||||| ||||||||| |||
Sbjct 1323 GGTTTGTATTAATTAATCAAGAAGGTTT 1350
> Ahg476008 jgi|Araly1|476008|fgenesh2_kg.2__1138__AT1G68810.1
Length=1473
Score = 215 bits (116), Expect = 8e-55
Identities = 228/281 (81%), Gaps = 12/281 (4%)
Strand=Plus/Plus
Query 400 GTCC-TTTGGGTT-CGATGGTGAGATCATGGGAAAATTGAGTGCACAAGAAG-TCATGGA 456
|||| |||||||| | | | |||| | | ||||| | ||| || |||| || |||||||
Sbjct 591 GTCCTTTTGGGTTAC-AAGCTGAG-TTA-GGGAAGA-TGACAGCCCAAG-AGATCATGGA 645
Query 457 TGCTAAGGCTTTAGCTGCTTCAAAGAGTCATAGTGAAGCTGAGAGAAGAAGACGAGAGAG 516
||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 646 CGCTAAAGCTTTGGCTGCTTCAAAGAGTCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAG 705
Query 517 AATCAACACTCATCTTGCTAAGCTGCGTAGTATATTACCAAACACAACCAAAACGGACAA 576
|||||| | |||||| |||||||| ||||| |||||||| ||||| ||||||||||| ||
Sbjct 706 AATCAATAATCATCTCGCTAAGCTCCGTAGCATATTACCCAACACCACCAAAACGGATAA 765
Query 577 AGCTTCTTTGCTAGCGGAAGTGATCCAACACATGAAGGAGCTAAA-ACGACAAACATCAC 635
||| || || ||||| |||||||||||||| |||| ||| | || | || | || |||
Sbjct 766 AGCGTCGTTACTAGCTGAAGTGATCCAACATGTGAAAGAGTTGAAGA-GAGAGACTTCAG 824
Query 636 AGATCACCGACACGTATCA-AGTCCCAACAGAGTGCGATGA 675
|||| | || || ||| | ||||||| ||| |||||||
Sbjct 825 TGATCTCAGAGACAAATCTTA-TCCCAACGGAGAGCGATGA 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52793079570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5