BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25716.1
Length=296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484333 jgi|Araly1|484333|fgenesh2_kg.5__325__AT3G25716.1 440 2e-123
> Ahg484333 jgi|Araly1|484333|fgenesh2_kg.5__325__AT3G25716.1
Length=292
Score = 440 bits (238), Expect = 2e-123
Identities = 276/294 (94%), Gaps = 4/294 (1%)
Strand=Plus/Plus
Query 3 GAGGAAGAGACAAAAGAAGTTGAA-AGGTCAAAAAGACAAGAGGATAGGCTCGATCACGT 61
|||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1 GAGGAAGAGACAGAAGAAGTTGAACA-GTCAAAAAGACAAGAGGATAGGCTCGATCACGT 59
Query 62 GCGGCGGGCCAA-CACGGCGGTCCTACCACCGTCGCCGTCGTGACCGGAACCATCGTCCT 120
|||||||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 60 GCGGCGGGCCAATC-CGGCGGTCCTACCACCGTCGCCGTCGTAACCAGAACCATCGTCCT 118
Query 121 CTTCTCTTGTCACTTTCTCACCTCTGGGTCCAAATTTTATTTGTTGATGTTCACATCATG 180
||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||
Sbjct 119 CTTCTCTTGTCACTTTCTCACATCTGGGTCCAAATTTTATTTATTGATGTTCATATCATG 178
Query 181 GAGTTTCCGATTTAATGGTTTATTTTACATTACCCAATTGAACTAAACATTCCCACGTAA 240
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 179 GAGTTTCCGATATAATGGTTTATTTTTTATTACCCAATTGAACTAAACATTCCCACGTAT 238
Query 241 CATTTGTGAACTATATCTTATTTCCATTTTTAGTCTTGTTTCAAGAACTCAATA 294
|||||||||||||| |||| |||||||||||||| || ||||||||||||||||
Sbjct 239 CATTTGTGAACTATTTCTTGTTTCCATTTTTAGTTTTATTTCAAGAACTCAATA 292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10378320208
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5