BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25716.1 Length=296 Score E Sequences producing significant alignments: (Bits) Value Ahg484333 jgi|Araly1|484333|fgenesh2_kg.5__325__AT3G25716.1 440 2e-123 > Ahg484333 jgi|Araly1|484333|fgenesh2_kg.5__325__AT3G25716.1 Length=292 Score = 440 bits (238), Expect = 2e-123 Identities = 276/294 (94%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 3 GAGGAAGAGACAAAAGAAGTTGAA-AGGTCAAAAAGACAAGAGGATAGGCTCGATCACGT 61 |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1 GAGGAAGAGACAGAAGAAGTTGAACA-GTCAAAAAGACAAGAGGATAGGCTCGATCACGT 59 Query 62 GCGGCGGGCCAA-CACGGCGGTCCTACCACCGTCGCCGTCGTGACCGGAACCATCGTCCT 120 |||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 60 GCGGCGGGCCAATC-CGGCGGTCCTACCACCGTCGCCGTCGTAACCAGAACCATCGTCCT 118 Query 121 CTTCTCTTGTCACTTTCTCACCTCTGGGTCCAAATTTTATTTGTTGATGTTCACATCATG 180 ||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| Sbjct 119 CTTCTCTTGTCACTTTCTCACATCTGGGTCCAAATTTTATTTATTGATGTTCATATCATG 178 Query 181 GAGTTTCCGATTTAATGGTTTATTTTACATTACCCAATTGAACTAAACATTCCCACGTAA 240 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 179 GAGTTTCCGATATAATGGTTTATTTTTTATTACCCAATTGAACTAAACATTCCCACGTAT 238 Query 241 CATTTGTGAACTATATCTTATTTCCATTTTTAGTCTTGTTTCAAGAACTCAATA 294 |||||||||||||| |||| |||||||||||||| || |||||||||||||||| Sbjct 239 CATTTGTGAACTATTTCTTGTTTCCATTTTTAGTTTTATTTCAAGAACTCAATA 292 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10378320208 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5