BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G25717.1

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484334 jgi|Araly1|484334|fgenesh2_kg.5__326__AT3G25717.1          654    0.0  


> Ahg484334 jgi|Araly1|484334|fgenesh2_kg.5__326__AT3G25717.1
Length=523

 Score =  654 bits (354),  Expect = 0.0
 Identities = 434/471 (92%), Gaps = 11/471 (2%)
 Strand=Plus/Plus

Query  10   TATCTACTTCGCAACTaaaactcaaaacaatcaaagaaaaaccctaaaagaaaaTCTCTA  69
            ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  1    TATCTTCTTCGCAACTAAAACTCAAAACAATCAAAGATAAACCCTAAAAGAAAATCTCTA  60

Query  70   TATCGAAGATGGGAGTTTTGAAGAGAAGAGTATCGAGCAGCAGAGGACTTGGTGGTGTTC  129
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  61   TATCGAAGATGGGAGTTTTGAAGAGAAGAGTATCGAGTAGCAGAGGACTTGGTGGTGTTC  120

Query  130  TTAGAGAGCAAAGAGCTAAGCTTTACATCATCAAACGATGTGTTGTTATGCTCCTATGTT  189
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  121  TTAGAGAGCAAAGAGCTAAGCTTTACATCATCAAACGATGTGTTGTGATGCTCCTATGTT  180

Query  190  GGCAAGATTGATCTTGGTTGATTCAAGTGTTGATACTTTGATGCTTAACCGGATCAAAGC  249
            ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct  181  GGCAAGATTAATCTTGGTTGATTCAAGTGGTGATACTTTGAAGCTTAACCGGATCAAACC  240

Query  250  GATGATTGCAACTTGCAAGAAGATACGAAGGAGGAAACCGGCTTGGGTTTTGCTTGCAAG  309
            |||||||||||   | || |   ||||||||||| |||||| ||||||||||||||||||
Sbjct  241  GATGATTGCAA---G-AATA---TACGAAGGAGGGAACCGGTTTGGGTTTTGCTTGCAAG  293

Query  310  AGGATATGAAAGAGGAAACTGGTTTGAGTTTTGCAAGAAGATAGACAATCGTAGGAGGAT  369
            | |||||||| ||  |||| |||||| ||||||||||||||||| ||||  |||| || |
Sbjct  294  AAGATATGAAGGAAAAAACCGGTTTGGGTTTTGCAAGAAGATAGTCAATTTTAGGGGGGT  353

Query  370  GGAAGTTGAACACTTTCGATATGGATATATGTTT--AGTTTTTGGAG-GATATATATGTA  426
            | ||||||||||||||||||||||||||||||||  ||||||||||  | ||||| ||||
Sbjct  354  GAAAGTTGAACACTTTCGATATGGATATATGTTTTTAGTTTTTGGAAAG-TATATTTGTA  412

Query  427  AATATACGAATAAAAGTTTGGGATGAATTTTGTAATGGCTTTTGCCTTATA  477
            |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  413  AATATACGAATAAAAGTTTGGGATAAATTTTGTAATGGCTTTTGCCTTATA  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20832951594


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5