BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25730.1
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484335 jgi|Araly1|484335|fgenesh2_kg.5__327__AT3G25730.1 1539 0.0
Ahg920198 jgi|Araly1|920198|scaffold_101479.1 614 6e-175
Ahg921660 jgi|Araly1|921660|scaffold_102941.1 237 2e-61
> Ahg484335 jgi|Araly1|484335|fgenesh2_kg.5__327__AT3G25730.1
Length=1176
Score = 1539 bits (833), Expect = 0.0
Identities = 1019/1103 (92%), Gaps = 36/1103 (3%)
Strand=Plus/Plus
Query 12 TTCACATTACTAATCTCTCAAGATTTCACAATTTTCTTGTGATTTTCTCTCAGTTTCTTA 71
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCACATTACTAATCTCTCAAGATTTCACAATTTTCTTGTGATTTTCTCTCAGTTTCTTC 60
Query 72 TTTCGTTTCATAACATGGATGCCATGAGTAGCGTAGACGAGAGCTCTACAACTACAGATT 131
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TTTCGTTGCATAACATGGATGCCATGAGTAGCGTAGACGAGAGCTCCACAACTACAGATT 120
Query 132 CCATTCCGGCGAGAAAGTCATCGTCTCCGGCGAGTTTACTATATAGAATGGGAAGCGGAA 191
| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 CGGTTCCGGCGAGAAATTTATCGTCTCCGGCGAGTTTACTATACAGAATGGGAAGCGGAA 180
Query 192 CAAGCGTGGTACTTGATTCAGAGAACGGTGTCGAAGTCGAAGTCGAAGCCGAATCAAGAA 251
|||||||||| |||||||||||||||||||||| | | | | | ||||||||||
Sbjct 181 CAAGCGTGGTTCTTGATTCAGAGAACGGTGTCG-A---G--G-C--A---GAATCAAGAA 228
Query 252 AGCTTCCTTCTTCAAGATTCAAAGGTGTTGTTCCTCAACCAAATGGAAGATGGGGAGCTC 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 AGCTTCCTTCTTCAAGATTCAAAGGTGTTGTTCCTCAACCAAATGGAAGATGGGGAGCTC 288
Query 312 AGATTTACGAGAAACATCAACGCGTGTGGCTTGGTACTTTCAACGAGGAAGACGAAGCAG 371
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 289 AGATTTACGAGAAACACCAACGCGTATGGCTTGGTACTTTCAACGAAGAAGACGAAGCAG 348
Query 372 CTCGTGCTTACGACGTCGCGGCTCACCGTTTCCGTGGCCGCGATGCCGTTACTAATTTCA 431
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 349 CTCGTGCTTACGACGTCGCGGCTCACCGTTTCCGTGGCCGTGACGCCGTTACTAATTTCA 408
Query 432 AAGACACGACGTTCGA--A-GAAGAGGTTGAGTTCTTAAACGCGCATTCGAAATCAGAGA 488
|||| ||||||||||| | || |||||||| ||||||||||| ||||||||||||||||
Sbjct 409 AAGAAACGACGTTCGACGATGACGAGGTTGATTTCTTAAACGCACATTCGAAATCAGAGA 468
Query 489 TCGTAGATATGTTGAGAAAACACACTTACAAAGAAGAGTTAGACCAAAGGAAACGTAACC 548
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 469 TCGTAGATATGTTGAGAAAACACACTTACAAAGAAGAGTTAGAGCAAAGGAAACGTAACC 528
Query 549 GTGACGGTAACGGAAA-AGAGACGACGGCGTTTGCTTTGGCTT--CGATGGTGGTTATGA 605
|| ||||||||||||| | ||||||||| ||||| || | || || ||| |||||| |
Sbjct 529 GTAACGGTAACGGAAACA-AGACGACGGAGTTTGGTTCCG-TTACCG-TGGCGGTTATAA 585
Query 606 CGGGGTTTAAAACGGCGGAGTTACTGTTTGAGAAAACGGTAACGCCAAGTGACGTCGGGA 665
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 CGGGGTTTAAAACGTCGGAGTTACTGTTTGAGAAAACGGTAACGCCAAGTGACGTCGGGA 645
Query 666 AACTAAACCGTTTAGTTATACCAAAACACCAAGCGGAGAAACATTTTCCGTTACCGTTAG 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AACTAAACCGTTTAGTTATACCAAAACACCAAGCGGAGAAACATTTTCCGTTACCGTTAG 705
Query 726 GTAATAATAACGTCTCCGTTAAAGGTATGCTGTTGAATTTCGAAGACGTTAACGGGAAAG 785
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 706 GTAATAATAACGTCTCCGTTAAAGGTATACTGTTGAATTTCGAAGACGTTAACGGAAAAG 765
Query 786 TGTGGAGGTTCCGTTACTCTTATTGGAATAGTAGTCAAAGTTATGTGTTGACCAAAGGTT 845
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 766 TGTGGAGGTTCCGTTACTCTTACTGGAATAGTAGTCAAAGTTATGTGTTGACCAAAGGTT 825
Query 846 GGAGTAGATTCGTTAAAGAGAAGAGACTTTGTGCTGGTGATTTGATCAGTTTTAAAAGAT 905
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 826 GGAGTAGATTTGTTAAAGAGAAGAGACTTTGTGCCGGTGATTTGATCAGTTTTAAAAGAT 885
Query 906 CCAACGATCAAGATCAAAAATTCTTTATCGGGTGGAAATCGAAAT-C----C-GGGTTGG 959
| |||| ||| |||||||| || ||||| || ||||||||||||| | | |||| ||
Sbjct 886 CTAACGGTCAGGATCAAAAGTTGTTTATTGGTTGGAAATCGAAATTCGGATCCGGGTCGG 945
Query 960 ATCTAGAGACGGGTCGGGTTATGAGATTGTTTGGGGTTGATATTTCTTTAAACGCCGTCG 1019
||| ||| || ||||||||| ||||||||||||||||||| ||||||||||||| |||||
Sbjct 946 ATCAAGAAACAGGTCGGGTTGTGAGATTGTTTGGGGTTGACATTTCTTTAAACGACGTCG 1005
Query 1020 TTGTAGTGAAGGAAACAACGGAGGTGTTAATGTCGTCGTTAAGGTGTAA---GAAG---C 1073
|||||||||||||| ||||||||||||| | ||||||||| ||||||| |||| |
Sbjct 1006 TTGTAGTGAAGGAAGCAACGGAGGTGTT--T-TCGTCGTTACGGTGTAATAAGAAGAAGC 1062
Query 1074 AACGAGTTTTGTAATAACAATTT 1096
|||||||||||||||||||||||
Sbjct 1063 AACGAGTTTTGTAATAACAATTT 1085
> Ahg920198 jgi|Araly1|920198|scaffold_101479.1
Length=1076
Score = 614 bits (332), Expect = 6e-175
Identities = 688/855 (80%), Gaps = 43/855 (5%)
Strand=Plus/Plus
Query 171 TATATAGAATGGGAAGCGGAACAAGCGTGGTACTT-GATTCAGAGAACGGTGTCGAAGTC 229
|||| || |||||||||||| |||||||||| || |||||||||||| | | | ||
Sbjct 118 TATACAGGATGGGAAGCGGATCAAGCGTGGT-GTTAGATTCAGAGAAC-G-G-C---GT- 169
Query 230 GAAGTCGAAGCCGAATCAAGAAAGCTTCCTTCTTCAAGATTCAAAGGTGTTGTTCCTCAA 289
| ||||| ||||| || |||||||| || |||| || ||||||||| || || |||
Sbjct 170 --A---GAAGCTGAATCTAGGAAGCTTCCGTCATCAAAATACAAAGGTGTGGTGCCGCAA 224
Query 290 CCAAATGGAAGATGGGGAGCTCAGATTTACGAGAAACATCAACGCGTGTGGCTTGGTACT 349
||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 225 CCAAACGGAAGATGGGGAGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGTACA 284
Query 350 TTCAACGAGGAAGACGAAGCAGCTCGTGCTTACGACGTCGCGGCTCACCGTTTCCGTGGC 409
|||||||| ||||||||||| |||||| | |||||||| |||| |||||| ||||||||
Sbjct 285 TTCAACGAAGAAGACGAAGCTGCTCGTTCCTACGACGTGGCGGTTCACCGGTTCCGTGGT 344
Query 410 CGCGATGCCGTTACTAATTTCAAAGACACGACGTT---CGAAGAAGAGGTTGAGTTCTTA 466
|| || ||||| || ||||| |||||| || | | |||||| ||||| ||||||||
Sbjct 345 CGTGACGCCGTCACAAATTTTAAAGACGTGAAGATGGACGAAGACGAGGTCGAGTTCTTG 404
Query 467 AACGCGCATTCGAAATCAGAGATCGTAGATATGTTGAGAAAACACACTTACAAAGAAGAG 526
|| | ||||||||||| |||||||| ||||||||||| ||||| ||||| || ||||||
Sbjct 405 AATTCTCATTCGAAATCTGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAG 464
Query 527 TTAGACCAAAGGAAACGTAACCGTGACGGTAACGGAAA-A-GAG--ACGACGGCGTTTGC 582
||||| || || ||||| ||| ||||||||||||| | | | | |||| ||| |
Sbjct 465 TTAGAGCAGAGTAAACGGCGTCGTAACGGTAACGGAAACATG-GTTAGGACGATGTTAAC 523
Query 583 TTTGGC-TTC-G-A-TGGTGGT-TAT-GACG--GG-GTTTAAAACGGCGGAGTTACTGTT 633
| || || | | || |||| | | |||| || ||||| | |||||||| ||||||
Sbjct 524 GTCGGGGTTGAGTAATGATGGTGTTTCGACGACGGAGTTTAGATCGGCGGAGGCACTGTT 583
Query 634 TGAGAAAACGGTAACGCCAAGTGACGTCGGGAAACTAAACCGTTTAGTTATACCAAAACA 693
||||||| ||||||||||||| ||||| ||||| ||||||||||| |||||||| |||||
Sbjct 584 TGAGAAAGCGGTAACGCCAAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGAAACA 643
Query 694 CCAAGCGGAGAAACATTTTCCGTTACCGTTAGGTAATAATAACGTCTCCGTTAAAGGTA- 752
|| ||||||||||| ||||||||||||| | |||| ||| ||||| ||||| |
Sbjct 644 TCACGCGGAGAAACACTTTCCGTTACCGTCAAGTAA------CGTTTCCGTGAAAGG-AG 696
Query 753 TGCTGTTGAA-TTTCGAAGACGTTAACGGGAAAGTGTGGAGGTTCCGTTACTCTTATTGG 811
|| ||||||| ||| || || |||||||||||||||||||||||||||||||| ||||||
Sbjct 697 TGTTGTTGAACTTT-GAGGATGTTAACGGGAAAGTGTGGAGGTTCCGTTACTCGTATTGG 755
Query 812 AATAGTAGTCAAAGTTATGTGTTGACCAAAGGTTGGAGTAGATTCGTTAAAGAGAAGAGA 871
|| |||||||| |||||||| ||||| ||||||||||| || |||||||| ||||||| |
Sbjct 756 AACAGTAGTCAGAGTTATGTTTTGACTAAAGGTTGGAGCAGGTTCGTTAAGGAGAAGA-A 814
Query 872 -CTTTGTGCTGGTGATTTGATCAGTTTTAAAAGATCCAACGATCAAGATCAAAAATTCTT 930
|| |||||||||| || | || || | ||||| |||| ||| |||||| | || |
Sbjct 815 TCTACGTGCTGGTGACGTGGTTAGCTTCAGTAGATCTAACGGTCAGGATCAACAGTTGTA 874
Query 931 TATCGGGTGGAAATCGAAATCCGGGTTGGATCTAGAGACGGGTCGGGTTATGAGATTGTT 990
|| |||||||| |||| |||||||| |||| |||| |||||||||||| ||||||||||
Sbjct 875 CATTGGGTGGAAGTCGAGATCCGGGTCGGATTTAGAAACGGGTCGGGTTTTGAGATTGTT 934
Query 991 TGGGGTTGATATTTC 1005
|| ||| | |||||
Sbjct 935 CGGAGTTAACATTTC 949
> Ahg921660 jgi|Araly1|921660|scaffold_102941.1
Length=1120
Score = 237 bits (128), Expect = 2e-61
Identities = 505/678 (74%), Gaps = 61/678 (9%)
Strand=Plus/Plus
Query 233 GTCGAAG-CCGAATCAAGAAAGCTTCCTTCTTC-AAGATTCAAAGGTGTTGTTCCTCAAC 290
|||| || |||| ||| | ||||| || || || || || |||||| ||||| |||||||
Sbjct 195 GTCG-AGACCGAGTCACGGAAGCTCCCGTCGTCGAA-ATACAAAGGCGTTGTGCCTCAAC 252
Query 291 CAAATGGAAGATGGGGAGCTCAGATTTACGAGAAACATCAACGCGTGTGGCTTGGTACTT 350
| || ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||
Sbjct 253 CTAACGGAAGATGGGGAGCTCAGATTTACGAGAAGCATCAGCGAGTTTGGCTCGGTACTT 312
Query 351 TCAACGAGGAAGACGAAGCAGCT-CGTGCTTACGACGTCGCGGCTCACC-GTTTCCGTGG 408
||||||| ||||| ||||| || | | |||||||| |||| ||| | | ||||||||
Sbjct 313 TCAACGAAGAAGAAGAAGCCGCGACTT-CTTACGACATCGCCGCT-AGGAGATTCCGTGG 370
Query 409 CCGCGATGCCGTTACTAATTTCAAAGACACGACGTTCGAAG-AA--GAGGTTGA---G-- 460
||| || ||||| |||||||||||| | | | ||| || | || || | || |
Sbjct 371 CCGTGACGCCGTCACTAATTTCAAAT-CTCAA-GTT-GATGGAAACGAAGCCGAAACGGC 427
Query 461 TT--CTTAAACGCGCATTCGAAATCAGAGATCGTAGATATGTTGAGAAAACACACTTACA 518
|| ||| | ||| ||||| ||| | |||||||| ||||||||||| ||||||||||||
Sbjct 428 TTTTCTTGA-CGCTCATTCTAAAGCTGAGATCGTTGATATGTTGAGGAAACACACTTACG 486
Query 519 AAGAAGAGTTAGACCAAAGGAAACGTAACCGTG--A-CGGTAACGGAAAAGAGACGACGG 575
|| ||||| || || || ||||| || || | ||||||||||||| || | |
Sbjct 487 CCGATGAGTTTGAGCAGAGCAAACGGAAATTTGTTAACGGTAACGGAAAA----CG-CTG 541
Query 576 CGTTTGCTTTGGCTTCGATGGT-GGTTATGACGGGGTTTAAA-A-CGGCG-GAG-TTACT 630
| | | | | ||||| || | |||| |||| | | || || ||| || |
Sbjct 542 TGGAT-CGGAGACGGCGATGCACGGAAACGACGCAGTTTTGAGAGCG-CGTGAGGTTT-T 598
Query 631 GTTTGAGAAAACGGTAACGCCAAGTGACGTCGGGAAACTAAACCGTTTAGTTATACCAAA 690
||| ||||| || || ||||| |||||||||||||| || ||||||||||| ||||| ||
Sbjct 599 GTTCGAGAAGACTGTGACGCCGAGTGACGTCGGGAAGCTGAACCGTTTAGTGATACCGAA 658
Query 691 ACACCAAGCGGAGAAACATTTTCCGTTACCGTT-A-G--GTA-----ATA---ATAA--C 736
||| || |||||||| ||||||||||||||| | | | | || || | |
Sbjct 659 ACAACACGCGGAGAAGCATTTTCCGTTACCGGCGACGACG-ACGGCGATGGGGATGAGTC 717
Query 737 -GTCTCCGTT-AAAGGTATGCTG-TTGAATTTCGAAGAC-GTTAAC-GGGAAAGTGTGGA 791
||||||| ||||| | || || || || |||||| | ||| ||||||||||||
Sbjct 718 CGTCTCCGACGAAAGGCGTTTTGATT-AACTTGGAAGACAG--AACAGGGAAAGTGTGGC 774
Query 792 GGTTCCGTTACTCTTATTGGAATAGTAGTCAAAGTTATGTGTTGACCAAAGGTTGGAGTA 851
||||||||||| ||| ||||| || ||||| ||||| ||||||||||| || |||||
Sbjct 775 GGTTCCGTTACAGTTACTGGAACAGCAGTCAGAGTTACGTGTTGACCAAGGGCTGGAGCC 834
Query 852 GATTCGTTAAAGAGAAGA 869
| ||||||||||||||||
Sbjct 835 GGTTCGTTAAAGAGAAGA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49674160851
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5