BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25740.1
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322718 jgi|Araly1|322718|fgenesh1_pm.C_scaffold_5000262 1537 0.0
Ahg471483 jgi|Araly1|471483|fgenesh2_kg.1__1437__AT1G13270.1 612 2e-174
> Ahg322718 jgi|Araly1|322718|fgenesh1_pm.C_scaffold_5000262
Length=1032
Score = 1537 bits (832), Expect = 0.0
Identities = 968/1034 (94%), Gaps = 8/1034 (1%)
Strand=Plus/Plus
Query 21 ATGTTGCAGAAGATTTCTCAGTCTATTTCTTTATGTAACGGCGATCAATTTAA-GCCGTT 79
|||||||||||||||||||||||| |||||||| |||||||||| || |||| |||||
Sbjct 1 ATGTTGCAGAAGATTTCTCAGTCTCGTTCTTTATTTAACGGCGAT-AAATTAACGCCGTC 59
Query 80 AATATACCTCGCCGGAGCTCCGACGAACTTCA-TCTCTTCCCCTCTCTCAGGCAAGAAGA 138
| ||| |||||||||||||||| ||||| | |||||| ||||||||||| ||| ||||
Sbjct 60 GAGATATTTCGCCGGAGCTCCGACTAACTT-ATTCTCTTTCCCTCTCTCAGTCAATAAGA 118
Query 139 AATCATCTTCTCTGAGAATTAAAAGGATACAACAACTTCAAAGTACATTAGAAGATAGAA 198
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 119 AATCATCTTCTCTGAGAATTAAAAGGATTCAACAATTTCAAAGTACATTAGAAGATAGAA 178
Query 199 TAAATCCACCACTAGTATGTGGAACAGTATCGCCACGTCTTAGTGTTCCTGATCATATAC 258
| |||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct 179 TTAATCCACCTCTAGTATGTGGAAGAGTATCGCCTCGTCTTCGTGTTCCTGATCATATAC 238
Query 259 TAAAGCCTCTATATGTTGAGTCTAGCAAAGTTCCAGA-GATATCAAGTGAATTACAGATT 317
|||||||| |||| |||||||||||||||| ||| | |||||||||||| |||||||||
Sbjct 239 CAAAGCCTCAATATCTTGAGTCTAGCAAAGTACCA-ATGATATCAAGTGAGTTACAGATT 297
Query 318 CCTGACTCT-ATAGGCATTGTGAAAATGAAGAAAGCGTGTGAGCTCGCGGCTCGTGTATT 376
||||||||| || |||||||||||||||||||||||||| ||||||||||| |||| ||
Sbjct 298 CCTGACTCTAAT-GGCATTGTGAAAATGAAGAAAGCGTGCAAGCTCGCGGCTGGTGTGTT 356
Query 377 AGACTATGCAGGAACTTTGGTTAGACCGTTTGTTACTACAGATGAAATTGATAAAGCAGT 436
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 357 AGACTATGCAGGAACTTTGGTTAGACCGTTTGTTACTACAGATGAAATTGACAAGGCAGT 416
Query 437 GCATCAGATGGTTATTGAGTTTGGTGCATATCCTTCACCTCTTGGATATGGTGGATTTCC 496
|||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||
Sbjct 417 GCATCAGATGGTTATTGAGTCTGGTGCTTATCCTTCACCTCTTGGTTATGGTGGGTTTCC 476
Query 497 TAAAAGTGTTTGTACATCGGTTAATGAATGTATGTTTCACGGGATTCCCGATTCTCGTCC 556
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 477 GAAAAGTGTTTGTACATCGGTTAATGAATGTATGTATCACGGGATTCCCGATTCTCGTCC 536
Query 557 GCTACAGAATGGAGATATTATAAACATCGATGTTGCGGTTTACTTGGATGGGTATCATGG 616
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 537 ATTACAGAATGGAGATATAATAAACATCGATGTCGCGGTTTACTTGGATGGATATCATGG 596
Query 617 AGATACGTCAAAGACTTTCTTATGTGGAGACGTCAATGGAAGCCTTAAACAACTTGTCAA 676
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct 597 AGATACGTCAAAGACTTTCTTATGTGGAGACGTCAATGAAAGCCTTAGACAACTTGTGAA 656
Query 677 GGTCACAGAAGAATGCTTGGAGAAAGGTATATCGGTTTGTAAAGATGGAGCAAGCTTCAA 736
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGTGACAGAAGAATGCTTGGAGAAAGGTATATCGGTTTGTAAAGATGGAGCAAGCTTCAA 716
Query 737 ACAAATCGGGAAGATAATCAGTGAGCATGCTGCAAAGTATGGCTATAATATGGAGCGATT 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 ACAAATCGGGAAGATAATCAGTGAGCATGCTGCAAAGTATGGCTATAATATGGAGCGTTT 776
Query 797 CATCGGTCATGGTGTAGGAACGGTATTACACTCGGAACCTCTTATATATCTTCATAGTAA 856
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 777 CATCGGTCATGGTGTAGGAATGGTATTACACTCGGAACCTCTTATATATCTTCATAGTAA 836
Query 857 CTATGATTATGAACTTGAATATATGATTGAAGGTCAAACTTTTACGCTCGAACCAATTCT 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTATGATTATGAACTTGAATATATGATTGAAGGTCAAACTTTTACGCTCGAACCAATTCT 896
Query 917 CACCATTGGAACAACAGAGTTTGTAACATGGCCTGACAAATGGACAATTGTGACCGCAGA 976
||| |||||||| || |||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 897 CACAATTGGAACGACCGAGTTTGTAATGTGGCCAGACAAATGGACAATTGTGACAGCAGA 956
Query 977 TGGTGGTCCGGCCGCACAGTTTGAGCATACAATTCTTATTACCACCACTGGTGCAGAAAT 1036
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 957 TGGTGGTCCGGCCGCACAGTTTGAGCATACAATTCTTATTACCACAACTGGTGCAGAAAT 1016
Query 1037 TCTCACCATATCAT 1050
||| ||||| ||||
Sbjct 1017 TCTAACCATTTCAT 1030
> Ahg471483 jgi|Araly1|471483|fgenesh2_kg.1__1437__AT1G13270.1
Length=1312
Score = 612 bits (331), Expect = 2e-174
Identities = 690/859 (80%), Gaps = 41/859 (5%)
Strand=Plus/Plus
Query 200 AAATCCACCACT-AGTATGTGGAACAGTATCGCCACGTCTTAGTGTTCCTGATCATATAC 258
|||||||||| | || | | |||| |||||| || ||||| ||| |||||||| || |
Sbjct 301 AAATCCACCATTAAG-ACGAGGAAGAGTATCACCTCGTCTCCTTGTACCTGATCACATTC 359
Query 259 TAAAGCCTCTATATGTTGAGTCTAGCAAAGTT-CCAGAGATATCAAGTGAATTACAGATT 317
|| ||||| ||||||||||||| | | || || || ||||||||||| || ||||||
Sbjct 360 CAAGGCCTCCATATGTTGAGTCTGGTGTA-TTACCGGATATATCAAGTGAGTTTCAGATT 418
Query 318 CCT-GACTCT-ATAGGCATTGTGAAAATGAAGA-AAGCGTGTGAGCTCGCGGCTCGTGTA 374
||| | | || | |||||||| ||||||| ||| || || |||||||| ||||| ||
Sbjct 419 CCTGGTC-CTGA-AGGCATTGCGAAAATG-AGAGCTGCCTGCGAGCTCGCTGCTCGGGTT 475
Query 375 TTAGACTATGCAGGAACTTTGGTT-AGACCGTTTGTTACTAC-AGATGAAATTGATAAAG 432
||| ||||||| |||||||||||| || || | |||||| || | ||||||| || ||||
Sbjct 476 TTAAACTATGCTGGAACTTTGGTTAAG-CCATCTGTTACGACTA-ATGAAATCGACAAAG 533
Query 433 CAGTGCATCAGATGGTTATTG-AGTTTGGTGCATATCCTTCACCTCTTGGATATGGTGGA 491
| |||||| | ||| |||||| || ||||| |||||||||||||||||||||||||||
Sbjct 534 CTGTGCATGATATGATTATTGAAG-CTGGTGGTTATCCTTCACCTCTTGGATATGGTGGA 592
Query 492 TTTCCTAAAAGTGTTTGTACATCGGTTAATGAATGTATGTTTCACGGGATTCCCGATTCT 551
|||||||||||||| |||||||| |||||||| ||||||| |||||| || || ||||||
Sbjct 593 TTTCCTAAAAGTGTGTGTACATCAGTTAATGAGTGTATGTGTCACGGAATACCGGATTCT 652
Query 552 CGTCC-GCTACAGAATGGAGATATTATAAACATCGATGTTGCGGTTTACTTGGATGGGTA 610
|| || |||||||| || ||||| |||||||||||||| |||||||||||||||| ||
Sbjct 653 CG-CCAGCTACAGAGCGGGGATATAATAAACATCGATGTCACGGTTTACTTGGATGGTTA 711
Query 611 TCATGGAGATACGTC-AAAGACTTTCTTATGTGGAGACGTCAATGGAAGCCTT-AAACAA 668
||||||||||| || ||| |||||||| || ||||| || | | ||| || |||| |
Sbjct 712 CCATGGAGATACATCGAAA-ACTTTCTTCTGCGGAGAAGTTGACG-AAGGTTTCAAACGA 769
Query 669 CTTGTCAAGGTCACAGAAGAATGCTTGGAGAAAGGTATAT-CGGTTTGTAAAGATGGAGC 727
||||| ||||| || |||||||| |||||||||||||| | | |||||||||||||||||
Sbjct 770 CTTGTGAAGGTTACGGAAGAATGTTTGGAGAAAGGTAT-TGCCGTTTGTAAAGATGGAGC 828
Query 728 AAGCTTCAA-ACAAATCGGGAAGATAATCAGTGAGCATGCTGCAAAGTATGGCTATAA-- 784
||||||||| | |||||||||| | ||||||||||||||| | |||||| ||||| ||
Sbjct 829 AAGCTTCAAGA-AAATCGGGAAAAGAATCAGTGAGCATGCGGAAAAGTACGGCTACAACG 887
Query 785 TA-TGGAGCGATTCATCGGTCATGGTGTAGGAACGGTATTACACTCGGAACCTCTTATAT 843
| ||||||| || | || |||||||| ||| | |||| ||||| |||||||||||||
Sbjct 888 TTGTGGAGCGGTTTGTTGGGCATGGTGTTGGACCAATATTCCACTCCGAACCTCTTATAT 947
Query 844 ATC-TTCATAGTAACTATGATTATGAACTTGAATATATGATTGAAGGTCAAACTTTTACG 902
||| || | | || ||||| | | || | | |||| |||| || |||||||| ||
Sbjct 948 ATCATT-ACCG-AA--ATGATGA-GC-CTGGGCT-TATGGTTGAGGGACAAACTTTCACA 1000
Query 903 CTCGAACCAATTCTCACCATTGGAACAACAGAGTTTGTAACATGGCCTGACAAATGGACA 962
| ||||| ||||| || |||||||| || || | |||||||||||| ||||| |||||
Sbjct 1001 ATTGAACCGATTCTGACGATTGGAACCACGGAATGTGTAACATGGCCAGACAACTGGACC 1060
Query 963 ATTGTGACCGCAGATGGTGGTCCGGC-C-GCACAGTTTGAGCATACAATTCTTATTACCA 1020
| | |||| ||||||||||| | | | | ||||||||||||||||| ||||| |||||||
Sbjct 1061 ACTCTGACAGCAGATGGTGG-C-GTCGCTGCACAGTTTGAGCATACCATTCTGATTACCA 1118
Query 1021 CCACTGGTGCAGAAATTCT 1039
|||||| |||| |||||
Sbjct 1119 GAACTGGTTCAGAGATTCT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43422002463
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5