BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25750.1
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484337 jgi|Araly1|484337|fgenesh2_kg.5__329__AT3G25750.1 1424 0.0
Ahg916399 jgi|Araly1|916399|Al_scaffold_0008_1150 808 0.0
Ahg491074 jgi|Araly1|491074|fgenesh2_kg.7__507__AT4G35733.1 202 5e-51
> Ahg484337 jgi|Araly1|484337|fgenesh2_kg.5__329__AT3G25750.1
Length=1021
Score = 1424 bits (771), Expect = 0.0
Identities = 958/1044 (92%), Gaps = 30/1044 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCGT 60
Query 61 TATTCCTCCAACATTGACGTCCTACGTATCCGTAGCACCTGTAAATCCTGGCGTTCTGCG 120
|||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||| ||
Sbjct 61 TATTCCTCCAACATCGACGTCCTCCGTATCCGTAGCATCTGTAAATACTGGCGTTCTACG 120
Query 121 GTTGCGATGTCTAAAGAGCGTCTTCAGTTTCGCTTTGAA-CGCTACCTTCCTACCTCCAA 179
||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 121 GTTACGATGTCTAAAGAGCGTCTTCAGTTTCGCTTT-AACCGCTACCTTCCTACCTCCAA 179
Query 180 CAAGAAGATAAAGGCTCATCTCTCTCCCACCACTTTCTTCCGTATAACTCTCCCTTCTTC 239
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 TAAGAAGATAAAGGCTCATCTCTTTCCCACCACTTTCTTCCGTATAACTCTCCCTTCTTC 239
Query 240 ATGTCCTAACAAAGGATGGCTAGTAAGAACTAGACAAGCCTCCAAAATGTATCGTAAGAT 299
|||||||||||| ||||||||| |||||||||| ||||||||| ||| |||||||||||
Sbjct 240 ATGTCCTAACAATGGATGGCTAATAAGAACTAGCCAAGCCTCC-AAA--TATCGTAAGAT 296
Query 300 TACTCTCTTGTGTCCTCTCTCTGGCGAGCGCATCACCCGTTCCCACCAAACCCTAGACCT 359
|||||||||| ||||| |||||||||||| ||||| || |||||||||||||||||||||
Sbjct 297 TACTCTCTTGAGTCCTATCTCTGGCGAGCTCATCATCCATTCCCACCAAACCCTAGACCT 356
Query 360 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACGAGATTCAA-ATATTCGATGGAT 418
||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||
Sbjct 357 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACAAGATT-AATATATTTGATGGAT 415
Query 419 TGAAGGACGAAAAGATACCATTAGATTCAGAGATATTCTCTAATTAT-ATCAAGAA-TAG 476
||||||||||||||||||| | ||| | ||||||||||||||| | || ||| ||
Sbjct 416 TGAAGGACGAAAAGATACC-----A-TCATATATATTCTCTAATTATGA-CATGAAGTA- 467
Query 477 TGACAAAATACCATCAGAAGGAAGTAGAAGTTGGACAAAAATTAAAAACCAAGTCGAAGA 536
|||||| | ||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 468 TGACAAGACACCATCAGACGGAAGTAGAAGTTGGACAAAAATTAATAACCAAGTCGAAGA 527
Query 537 TTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAAT 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 TTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAAC 587
Query 597 TTGGTGGATTAGTTTATCACAGCTTACCATTGTTCAACAGACATCTTCAACTCCGTTGGA 656
|||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||
Sbjct 588 TTGGTGGATTAGTTTATCACAGCTTAGTGCTGTTCAACAGACACCTTCAACTCCATTGGA 647
Query 657 CTACTATAAATATGATAGTTGCCAAGACACGAGGCTCGTGGAATATTGTGGAGATCTATG 716
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 648 CTACTATAATTATGATAGTTGCGAAGACACGAGGCTCGTGGAATATTGTGGAGATCTATG 707
Query 717 CATTGTTCATGAACTTAGCATAACTCGAA-ATCATATCCAG-AGGACCGTTGGTTTTAAG 774
|||||||||| |||||||| | ||| || || ||||| || ||||||||||||||||||
Sbjct 708 CATTGTTCATCAACTTAGCGTTACTA-AACATTATATC-AGGAGGACCGTTGGTTTTAAG 765
Query 775 GTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGTTAGTTGCTTGGGAGACAAC 834
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 766 GTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGTTAGTTCCTTGGGAGACAAG 825
Query 835 ACACTCATTGTTGCTTGCAACAGTTGTTTTACTGTCGTAGCCTCTGAGTACCATGGATGT 894
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 826 GCACTCATTGTTGCTTGGGACAGTTGTTTTACGGTCGTAGCCTCTGAGTACCATGGATGT 885
Query 895 TTGAAGAATTCTATTTACTTCTCTTATTATGATGTCAAGAAGGCCGAAAATATAAAAGTG 954
||||||||| |||| ||||||| || | ||||| | | | | | |||||| | ||||||
Sbjct 886 TTGAAGAATGCTATCTACTTCT-TT-T-ATGAT-T-ATG--G-C-GAAAATCTTAAAGTG 936
Query 955 TTCAAGCTTGATGATGGTAGTATCACCCAGAGGACTGATATTTCTTCTCAGAGTTGTTTT 1014
||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 937 TTCAAGCTTGATGATGGTAGTATCATCGAGATGACTGATATTTCTTCTCAGAGTTGTTTT 996
Query 1015 CACATGTTCTCTCTTCCCTTCCTC 1038
||||||||||| ||| |||| |||
Sbjct 997 CACATGTTCTCACTTTCCTTTCTC 1020
> Ahg916399 jgi|Araly1|916399|Al_scaffold_0008_1150
Length=612
Score = 808 bits (437), Expect = 0.0
Identities = 549/600 (92%), Gaps = 20/600 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCGT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCTT 60
Query 61 TATTCCTCCAACATTGACGTCCTACGTATCCGTAGCACCTGTAAATCCTGGCGTTCTGCG 120
|||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||| ||
Sbjct 61 TATTCCTCCAACATCGACGTCCTCCGTATCCGTAGCATCTGTAAATACTGGCGTTCTACG 120
Query 121 GTTGCGATGTCTAAAGAGCGTCTTCAGTTTCGCTTTGAAC-GCTACCTTCCTACCTCCAA 179
||| |||||||||||||| ||||||||||| ||||| || |||||||||||||||||||
Sbjct 121 GTTACGATGTCTAAAGAGTGTCTTCAGTTTTGCTTT-TACAGCTACCTTCCTACCTCCAA 179
Query 180 CAAGAAGATAAAGGCTCATCTCTCTCCCACCACTTTCTTCCGTATAACTCTCCCTTCTTC 239
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 180 TAAGAAGATAAAGGCTCATCTCTTTCCCACCACTTTTTTCCGTATAACTCTCCCTTCTTC 239
Query 240 ATGTCCTAACAAAGGATGGCTAGTAAGAACTAGACAAGCCTCCAAAATGTATCGTAAGAT 299
|||||||||||||||||||||| |||||||||| ||||||||| ||| ||| |||||||
Sbjct 240 ATGTCCTAACAAAGGATGGCTAATAAGAACTAGCCAAGCCTCC-AAA--TATTGTAAGAT 296
Query 300 TACTCTCTTGTGTCCTCTCTCTGGCGAGCGCATCACCCGTTCCCACCAAACCCTAGACCT 359
|||||||||| ||||| |||||||||||| ||||| || |||||||||||||||||||||
Sbjct 297 TACTCTCTTGAGTCCTATCTCTGGCGAGCTCATCATCCATTCCCACCAAACCCTAGACCT 356
Query 360 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACGAGATTC-AAATATTCGATGGAT 418
||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 357 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACGAGATTATAAA-ATTTGATGGAT 415
Query 419 TGAAGGACGAAAAGATACCATTAGATTCAGAGATATTCTCTAATTAT-ATCAAGAA-TAG 476
||||||||||| ||||||||| |||| | |||||||||||||| || | ||| ||
Sbjct 416 TGAAGGACGAAGAGATACCATCAGAT--A----TATTCTCTAATTATGAT-ATGAAGTA- 467
Query 477 TGACAA-AATACCATCAGAAGGAAGTAGAAGTTGGACAAAAATTAAAAACCAAGTCGAAG 535
||| || || |||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 468 TGATAAGAA-ACCATCAGAAGGAAGTAGAAGTTGGACAAAAATTAATAACCAAGTCAAAG 526
Query 536 ATTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAA 595
|||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 527 ATTTCTTGGACATTATACTTCACATGGGACATATCTATGCCGTGGACTTAAA-GGAGCAA 585
> Ahg491074 jgi|Araly1|491074|fgenesh2_kg.7__507__AT4G35733.1
Length=1080
Score = 202 bits (109), Expect = 5e-51
Identities = 388/514 (75%), Gaps = 54/514 (11%)
Strand=Plus/Plus
Query 537 TTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAAT 596
||||||||| ||| || |||||| || ||| |||||| | ||||||||||| ||| |
Sbjct 570 TTTCTCGGATATTGTATTTCACAAAGGTTATATGTATGCCTTAGACTTAAAAGGCGCAGT 629
Query 597 TTGGTGGATTAGTTTATCACAGCTT-ACCAT-TGTTC-A-ACAGACATCTTCAACTCCGT 652
|||||||||||||||||| || || | || | ||| | || ||| ||||||||||
Sbjct 630 TTGGTGGATTAGTTTATCTGAGTTTGA-AATAT-TTCAATACGGAC--CTTCAACTCCAC 685
Query 653 TGGACTACTAT-AAATATGATAGTTGCCAAGACACGAGGCTCGTGGAATATTGTGGAGAT 711
||||||||||| | || ||||| |||| |||||| |||| | ||||| ||||| ||||||
Sbjct 686 TGGACTACTATGACAT-TGATACTTGCAAAGACAAGAGGTTTGTGGAGTATTGCGGAGAT 744
Query 712 CTATGCATTGTTCAT-GA-ACT-TAGCATAA-CTCG----AA---A--TCATATCCAGAG 758
||||||||||||||| || | ||| | || ||| || | | ||||| | |
Sbjct 745 CTATGCATTGTTCATCGATTTTGTAGGA-AATTTCGCCTAAAGCGAGTTGATATCGATAT 803
Query 759 GACCGTTGGTTTTAAGGTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGTTA- 817
||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 804 AACCGTTGGTTTTAAGGTTTATAAGATGGACGAGGAATTGGTTGAATATGTTGAGGTTAA 863
Query 818 GTTGCTT-GGGAGACAACACACTCATTGTTGCTTGCAACAGTT-GTT--TT-ACTGTCGT 872
|| ||| ||| || || | | |||| | | || |||| | ||| || |||||| |
Sbjct 864 GT--CTTTGGGGGATAAGGCT-T--TTGT-GATGGCTACAGATAGTTGCTTCACTGTCTT 917
Query 873 AGCCTCT-GAGTACCATGGATGTTTGAAGAATTCTATTTACTTCTCTTATT-ATGATGTC 930
|| | ||||| ||||||||||| ||||||| || || || | | | | | || |
Sbjct 918 GGC-TAGAGAGTATTATGGATGTTTGGAGAATTCGATCTA-TT-T-T-ACTGACGAGG-- 970
Query 931 AAGAAGGCCGAAA-A-TATAAAAGTGTTCAAGCTTGATGATGGTAGTATCACCCAGA-GG 987
|||| | | |||| | | | |||||||||||||||| ||||||||||||||| ||| ||
Sbjct 971 AAGA-G-C-GAAACAATGTTAAAGTGTTCAAGCTTGGTGATGGTAGTATCACTAAGATGG 1027
Query 988 ACTGATAT-TTCTTCTCAGAGTTGTTTTCACATG 1020
|||| | ||||| ||||||||||||||| |||
Sbjct 1028 T-TGAT-TCTTCTTTTCAGAGTTGTTTTCAGATG 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38961621174
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5