BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25750.1 Length=1047 Score E Sequences producing significant alignments: (Bits) Value Ahg484337 jgi|Araly1|484337|fgenesh2_kg.5__329__AT3G25750.1 1424 0.0 Ahg916399 jgi|Araly1|916399|Al_scaffold_0008_1150 808 0.0 Ahg491074 jgi|Araly1|491074|fgenesh2_kg.7__507__AT4G35733.1 202 5e-51 > Ahg484337 jgi|Araly1|484337|fgenesh2_kg.5__329__AT3G25750.1 Length=1021 Score = 1424 bits (771), Expect = 0.0 Identities = 958/1044 (92%), Gaps = 30/1044 (3%) Strand=Plus/Plus Query 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCGT 60 Query 61 TATTCCTCCAACATTGACGTCCTACGTATCCGTAGCACCTGTAAATCCTGGCGTTCTGCG 120 |||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||| || Sbjct 61 TATTCCTCCAACATCGACGTCCTCCGTATCCGTAGCATCTGTAAATACTGGCGTTCTACG 120 Query 121 GTTGCGATGTCTAAAGAGCGTCTTCAGTTTCGCTTTGAA-CGCTACCTTCCTACCTCCAA 179 ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 121 GTTACGATGTCTAAAGAGCGTCTTCAGTTTCGCTTT-AACCGCTACCTTCCTACCTCCAA 179 Query 180 CAAGAAGATAAAGGCTCATCTCTCTCCCACCACTTTCTTCCGTATAACTCTCCCTTCTTC 239 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 180 TAAGAAGATAAAGGCTCATCTCTTTCCCACCACTTTCTTCCGTATAACTCTCCCTTCTTC 239 Query 240 ATGTCCTAACAAAGGATGGCTAGTAAGAACTAGACAAGCCTCCAAAATGTATCGTAAGAT 299 |||||||||||| ||||||||| |||||||||| ||||||||| ||| ||||||||||| Sbjct 240 ATGTCCTAACAATGGATGGCTAATAAGAACTAGCCAAGCCTCC-AAA--TATCGTAAGAT 296 Query 300 TACTCTCTTGTGTCCTCTCTCTGGCGAGCGCATCACCCGTTCCCACCAAACCCTAGACCT 359 |||||||||| ||||| |||||||||||| ||||| || ||||||||||||||||||||| Sbjct 297 TACTCTCTTGAGTCCTATCTCTGGCGAGCTCATCATCCATTCCCACCAAACCCTAGACCT 356 Query 360 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACGAGATTCAA-ATATTCGATGGAT 418 ||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||| Sbjct 357 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACAAGATT-AATATATTTGATGGAT 415 Query 419 TGAAGGACGAAAAGATACCATTAGATTCAGAGATATTCTCTAATTAT-ATCAAGAA-TAG 476 ||||||||||||||||||| | ||| | ||||||||||||||| | || ||| || Sbjct 416 TGAAGGACGAAAAGATACC-----A-TCATATATATTCTCTAATTATGA-CATGAAGTA- 467 Query 477 TGACAAAATACCATCAGAAGGAAGTAGAAGTTGGACAAAAATTAAAAACCAAGTCGAAGA 536 |||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 468 TGACAAGACACCATCAGACGGAAGTAGAAGTTGGACAAAAATTAATAACCAAGTCGAAGA 527 Query 537 TTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAAT 596 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 528 TTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAAC 587 Query 597 TTGGTGGATTAGTTTATCACAGCTTACCATTGTTCAACAGACATCTTCAACTCCGTTGGA 656 |||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| Sbjct 588 TTGGTGGATTAGTTTATCACAGCTTAGTGCTGTTCAACAGACACCTTCAACTCCATTGGA 647 Query 657 CTACTATAAATATGATAGTTGCCAAGACACGAGGCTCGTGGAATATTGTGGAGATCTATG 716 ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 648 CTACTATAATTATGATAGTTGCGAAGACACGAGGCTCGTGGAATATTGTGGAGATCTATG 707 Query 717 CATTGTTCATGAACTTAGCATAACTCGAA-ATCATATCCAG-AGGACCGTTGGTTTTAAG 774 |||||||||| |||||||| | ||| || || ||||| || |||||||||||||||||| Sbjct 708 CATTGTTCATCAACTTAGCGTTACTA-AACATTATATC-AGGAGGACCGTTGGTTTTAAG 765 Query 775 GTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGTTAGTTGCTTGGGAGACAAC 834 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 766 GTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGTTAGTTCCTTGGGAGACAAG 825 Query 835 ACACTCATTGTTGCTTGCAACAGTTGTTTTACTGTCGTAGCCTCTGAGTACCATGGATGT 894 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 826 GCACTCATTGTTGCTTGGGACAGTTGTTTTACGGTCGTAGCCTCTGAGTACCATGGATGT 885 Query 895 TTGAAGAATTCTATTTACTTCTCTTATTATGATGTCAAGAAGGCCGAAAATATAAAAGTG 954 ||||||||| |||| ||||||| || | ||||| | | | | | |||||| | |||||| Sbjct 886 TTGAAGAATGCTATCTACTTCT-TT-T-ATGAT-T-ATG--G-C-GAAAATCTTAAAGTG 936 Query 955 TTCAAGCTTGATGATGGTAGTATCACCCAGAGGACTGATATTTCTTCTCAGAGTTGTTTT 1014 ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| Sbjct 937 TTCAAGCTTGATGATGGTAGTATCATCGAGATGACTGATATTTCTTCTCAGAGTTGTTTT 996 Query 1015 CACATGTTCTCTCTTCCCTTCCTC 1038 ||||||||||| ||| |||| ||| Sbjct 997 CACATGTTCTCACTTTCCTTTCTC 1020 > Ahg916399 jgi|Araly1|916399|Al_scaffold_0008_1150 Length=612 Score = 808 bits (437), Expect = 0.0 Identities = 549/600 (92%), Gaps = 20/600 (3%) Strand=Plus/Plus Query 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCTT 60 Query 61 TATTCCTCCAACATTGACGTCCTACGTATCCGTAGCACCTGTAAATCCTGGCGTTCTGCG 120 |||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||| || Sbjct 61 TATTCCTCCAACATCGACGTCCTCCGTATCCGTAGCATCTGTAAATACTGGCGTTCTACG 120 Query 121 GTTGCGATGTCTAAAGAGCGTCTTCAGTTTCGCTTTGAAC-GCTACCTTCCTACCTCCAA 179 ||| |||||||||||||| ||||||||||| ||||| || ||||||||||||||||||| Sbjct 121 GTTACGATGTCTAAAGAGTGTCTTCAGTTTTGCTTT-TACAGCTACCTTCCTACCTCCAA 179 Query 180 CAAGAAGATAAAGGCTCATCTCTCTCCCACCACTTTCTTCCGTATAACTCTCCCTTCTTC 239 |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 180 TAAGAAGATAAAGGCTCATCTCTTTCCCACCACTTTTTTCCGTATAACTCTCCCTTCTTC 239 Query 240 ATGTCCTAACAAAGGATGGCTAGTAAGAACTAGACAAGCCTCCAAAATGTATCGTAAGAT 299 |||||||||||||||||||||| |||||||||| ||||||||| ||| ||| ||||||| Sbjct 240 ATGTCCTAACAAAGGATGGCTAATAAGAACTAGCCAAGCCTCC-AAA--TATTGTAAGAT 296 Query 300 TACTCTCTTGTGTCCTCTCTCTGGCGAGCGCATCACCCGTTCCCACCAAACCCTAGACCT 359 |||||||||| ||||| |||||||||||| ||||| || ||||||||||||||||||||| Sbjct 297 TACTCTCTTGAGTCCTATCTCTGGCGAGCTCATCATCCATTCCCACCAAACCCTAGACCT 356 Query 360 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACGAGATTC-AAATATTCGATGGAT 418 ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| Sbjct 357 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACGAGATTATAAA-ATTTGATGGAT 415 Query 419 TGAAGGACGAAAAGATACCATTAGATTCAGAGATATTCTCTAATTAT-ATCAAGAA-TAG 476 ||||||||||| ||||||||| |||| | |||||||||||||| || | ||| || Sbjct 416 TGAAGGACGAAGAGATACCATCAGAT--A----TATTCTCTAATTATGAT-ATGAAGTA- 467 Query 477 TGACAA-AATACCATCAGAAGGAAGTAGAAGTTGGACAAAAATTAAAAACCAAGTCGAAG 535 ||| || || |||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 468 TGATAAGAA-ACCATCAGAAGGAAGTAGAAGTTGGACAAAAATTAATAACCAAGTCAAAG 526 Query 536 ATTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAA 595 |||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 527 ATTTCTTGGACATTATACTTCACATGGGACATATCTATGCCGTGGACTTAAA-GGAGCAA 585 > Ahg491074 jgi|Araly1|491074|fgenesh2_kg.7__507__AT4G35733.1 Length=1080 Score = 202 bits (109), Expect = 5e-51 Identities = 388/514 (75%), Gaps = 54/514 (11%) Strand=Plus/Plus Query 537 TTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAAT 596 ||||||||| ||| || |||||| || ||| |||||| | ||||||||||| ||| | Sbjct 570 TTTCTCGGATATTGTATTTCACAAAGGTTATATGTATGCCTTAGACTTAAAAGGCGCAGT 629 Query 597 TTGGTGGATTAGTTTATCACAGCTT-ACCAT-TGTTC-A-ACAGACATCTTCAACTCCGT 652 |||||||||||||||||| || || | || | ||| | || ||| |||||||||| Sbjct 630 TTGGTGGATTAGTTTATCTGAGTTTGA-AATAT-TTCAATACGGAC--CTTCAACTCCAC 685 Query 653 TGGACTACTAT-AAATATGATAGTTGCCAAGACACGAGGCTCGTGGAATATTGTGGAGAT 711 ||||||||||| | || ||||| |||| |||||| |||| | ||||| ||||| |||||| Sbjct 686 TGGACTACTATGACAT-TGATACTTGCAAAGACAAGAGGTTTGTGGAGTATTGCGGAGAT 744 Query 712 CTATGCATTGTTCAT-GA-ACT-TAGCATAA-CTCG----AA---A--TCATATCCAGAG 758 ||||||||||||||| || | ||| | || ||| || | | ||||| | | Sbjct 745 CTATGCATTGTTCATCGATTTTGTAGGA-AATTTCGCCTAAAGCGAGTTGATATCGATAT 803 Query 759 GACCGTTGGTTTTAAGGTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGTTA- 817 ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| Sbjct 804 AACCGTTGGTTTTAAGGTTTATAAGATGGACGAGGAATTGGTTGAATATGTTGAGGTTAA 863 Query 818 GTTGCTT-GGGAGACAACACACTCATTGTTGCTTGCAACAGTT-GTT--TT-ACTGTCGT 872 || ||| ||| || || | | |||| | | || |||| | ||| || |||||| | Sbjct 864 GT--CTTTGGGGGATAAGGCT-T--TTGT-GATGGCTACAGATAGTTGCTTCACTGTCTT 917 Query 873 AGCCTCT-GAGTACCATGGATGTTTGAAGAATTCTATTTACTTCTCTTATT-ATGATGTC 930 || | ||||| ||||||||||| ||||||| || || || | | | | | || | Sbjct 918 GGC-TAGAGAGTATTATGGATGTTTGGAGAATTCGATCTA-TT-T-T-ACTGACGAGG-- 970 Query 931 AAGAAGGCCGAAA-A-TATAAAAGTGTTCAAGCTTGATGATGGTAGTATCACCCAGA-GG 987 |||| | | |||| | | | |||||||||||||||| ||||||||||||||| ||| || Sbjct 971 AAGA-G-C-GAAACAATGTTAAAGTGTTCAAGCTTGGTGATGGTAGTATCACTAAGATGG 1027 Query 988 ACTGATAT-TTCTTCTCAGAGTTGTTTTCACATG 1020 |||| | ||||| ||||||||||||||| ||| Sbjct 1028 T-TGAT-TCTTCTTTTCAGAGTTGTTTTCAGATG 1059 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38961621174 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5