BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25760.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936257 jgi|Araly1|936257|scaffold_500448.1 1181 0.0
Ahg484339 jgi|Araly1|484339|fgenesh2_kg.5__331__AT3G25770.1 1101 0.0
Ahg484340 jgi|Araly1|484340|fgenesh2_kg.5__332__AT3G25780.1 584 4e-166
> Ahg936257 jgi|Araly1|936257|scaffold_500448.1
Length=802
Score = 1181 bits (639), Expect = 0.0
Identities = 751/805 (93%), Gaps = 7/805 (1%)
Strand=Plus/Plus
Query 71 TCTTTCTTTTTATTGAGCAATGGCTTCTTCTACAATCTCTCTCCAATCTATCTCCATGAC 130
||||| ||||| |||||||||| |||||||| |||| ||| |||||||||||||||||||
Sbjct 4 TCTTT-TTTTT-TTGAGCAATGTCTTCTTCTGCAATGTCTTTCCAATCTATCTCCATGAC 61
Query 131 AACTCTCAACAATCTCTCATATAGTAAACAATTTCATCGAAGCTCTCTTCTTGGTTTCTC 190
|||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 62 AACTCTCAACAATCTCTCATGTAATCAACAATTTCATCGAAGCTCTCTTCTTGGTTTCTC 121
Query 191 TAAATCCTTCCAAAATTTTGGTATCTCATCTAACGGTCCAGGTTCCTCCTCTCCGA-CAA 249
|||||||||||||||| |||||||||||||||| ||||||| |||||||||| || |||
Sbjct 122 TAAATCCTTCCAAAATCTTGGTATCTCATCTAATGGTCCAGATTCCTCCTCT-AGATCAA 180
Query 250 GTTTCACGCCCAAGAAGAAACTCACTCCTACTCGAGCTCTCTCTCAGAACTTGGGAAATA 309
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 GTTTCACTCCCAAGAAGAAACTCACTCCTACTCGAGCTCTCTCCCAGAACTTGGGAAATA 240
Query 310 CCGAAAACCCCAGACCAAGCAAAGTTCAAGAACTGAGCGTGTACGAAATCAATGATTTAG 369
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 241 CCGAAAACCCCAGACCAAGTAAAGTTCAAGAACTGAGCGTGTACGAAATCAACGATTTAG 300
Query 370 ATCGACACAGCCCAAAAATTCTTAAAAACGCATTCAGCTTTAGGTTTGGTCTCGGAGATC 429
|| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 301 ATAGACACAGCCCAAAAATTCTTAAAAACGCATTCAGCTTTATGTTCGGTCTCGGAGATC 360
Query 430 TCGTCCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGG 489
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGTCCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGG 420
Query 490 CTGGTCTCTGCGTTGTGATCGAACACGTCCCTGAGAAGAACGGTGATAGATTCGAAGCTA 549
| |||||||| || || |||||||||||||| || | ||| ||||| |||||||||||||
Sbjct 421 CAGGTCTCTGTGTCGTCATCGAACACGTCCC-GA-A-GAAAGGTGAAAGATTCGAAGCTA 477
Query 550 CGTACAGCTTCTACTTCGGAGACTATGGCCACTTGTCCGTACAAGGACCATACTTGACTT 609
| || ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 478 CTTATAGCTTCTACTTCGGAGACTATGGACACTTGTCCGTTCAAGGACCGTACTTGACTT 537
Query 610 ACGAGGATTCGTTCCTTGCCATCACTGGTGGCGCTGGAATCTTTGAAGGTGCCTACGGAC 669
||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 538 ACGAGGACTCGTTCCTCGCCATCACTGGTGGCGCTGGAATCTTCGAAGGTGCGTACGGAC 597
Query 670 AGGTTAAGCTTCAACAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTATCTTAAAG 729
| ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||
Sbjct 598 AAGTTAAGCTTCAACAGATTGTGTATCCGACAAAATTGTTCTACACTTTTTACCTTAAAG 657
Query 730 GATTGGCTAATGATTTGCCACTGGAGCTCATAGGAACTCCGGTACCACCGTCTAAGGACG 789
| |||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||
Sbjct 658 GGTTGGCTAATGATTTGCCATTGGAGCTCACCGGAACGCCGGTACCCCCGTCTAAGGACG 717
Query 790 TGGAGCCAGCACCGGAAGCTAAGGCGCTTAAGCCCAGTGGAGTTGTAAGCAACTTTACAA 849
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 718 CGGAGCCAGCACCGGAAGCTAAGGCGCTTGAGCCCAGCGGAGTTGTAAGCAACTTTACAA 777
Query 850 ATTAGTGAATAAAATTAGTCTTATC 874
|||||||||||||||||||||||||
Sbjct 778 ATTAGTGAATAAAATTAGTCTTATC 802
> Ahg484339 jgi|Araly1|484339|fgenesh2_kg.5__331__AT3G25770.1
Length=850
Score = 1101 bits (596), Expect = 0.0
Identities = 770/852 (90%), Gaps = 19/852 (2%)
Strand=Plus/Plus
Query 1 AAATCACTCACCACATAAAACCAAAGTCCCATCTCTTAAAAAACTAATCATTTCAAAGTT 60
||||||||||||||||||| ||||||||||||||| | | || || | ||||
Sbjct 1 AAATCACTCACCACATAAAGTAAAAGTCCCATCTCTT---CATC-AA--ATAGC--AGTT 52
Query 61 T-TGTCTCTAGTCTTTCTTTTTATTGAGCAATGGCTTCTTCTACAATCTCTCTCCAATCT 119
| | |||||||||||| || || |||||||||||||||||| |||| |||||||||||
Sbjct 53 TCT-TCTCTAGTCTTTATTGTT-TTGAGCAATGGCTTCTTCGGCAATGTCTCTCCAATCC 110
Query 120 ATCTCCATGACAACTCTCAACAATCTCTCATATAGTAAACAATTTCATCGAAGCTCTCTT 179
||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 111 ATCTCCATGACAACTCTCAACAATCTCTCATGTAATCAACAATTTCATCGAAGCTCTCTT 170
Query 180 CTTGGTTTCTCTAAATCCTTCCAAAATTTTGGTATCTCATCTAACGGTCCAGGTTCCTCC 239
|||||||||||||||||||| |||||| |||||||||||||||| ||||||| |||||||
Sbjct 171 CTTGGTTTCTCTAAATCCTTTCAAAATCTTGGTATCTCATCTAATGGTCCAGATTCCTCC 230
Query 240 TCTCCGA-CAAGTTTCACGCCCAAGAAGAAACTCACTCCTACTCGAGCT-CTCTCT--CA 295
||||| | |||||||||| |||||||||||||||||| || |||||||| |||||| ||
Sbjct 231 TCTCC-ATCAAGTTTCACTCCCAAGAAGAAACTCACTGCTTCTCGAGCTACTCTCTCCCA 289
Query 296 GAACTTGGGAAATACCGAAAACCCCAGACCAAGCAAAGTTCAAGAACTGAGCGTGTACGA 355
|||| ||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 290 GAAC--GGG-AATATCGAAAACCCTAGACCAAGCAAAGTTCAAGAACTGAGTGTGTACGA 346
Query 356 AATCAATGATTTAGATCGACACAGCCCAAAAATTCTTAAAAACGCATTCAGCTTTAGGTT 415
|||||| || ||||||||||||||||| || |||||||||||||| |||||||| | |||
Sbjct 347 AATCAACGAATTAGATCGACACAGCCCCAAGATTCTTAAAAACGCCTTCAGCTTAATGTT 406
Query 416 TGGTCTCGGAGATCTCGTCCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACG 475
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CGGTCTCGGAGATCTTGTTCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACG 466
Query 476 CGTGGGAATCACGGCTGGTCTCTGCGTTGTGATCGAACACGTCCCTGAGAAGAACGGTGA 535
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 467 CGTGGGAATCACGGCAGGTCTCTGCGTCGTGATCGAACACGTCCCTGAGAAGAACGGTGA 526
Query 536 TAGATTCGAAGCTACGTACAGCTTCTACTTCGGAGACTATGGCCACTTGTCCGTACAAGG 595
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CAGATTCGAAGCTACTTACAGCTTCTACTTCGGAGACTATGGCCACTTGTCCGTACAAGG 586
Query 596 ACCATACTTGACTTACGAGGATTCGTTCCTTGCCATCACTGGTGGCGCTGGAATCTTTGA 655
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 587 ACCATACTTGACTTACGAGGACTCGTTCCTCGCCATCACTGGTGGCGCTGGAATCTTCGA 646
Query 656 AGGTGCCTACGGACAGGTTAAGCTTCAACAGCTTGTGTATCCGACAAAACTGTTCTACAC 715
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AGGTGCGTACGGACAGGTTAAGCTTCAACAGCTTGTGTATCCGACAAAACTGTTCTACAC 706
Query 716 TTTTTATCTTAAAGGATTGGCTAATGATTTGCCACTGGAGCTCATAGGAACTCCGGTACC 775
|||||| |||||||| |||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct 707 TTTTTACCTTAAAGGGTTGGCTAATGATTTGCCATTGGAGCTCACCGGAACGCCGGTACC 766
Query 776 ACCGTCTAAGGACGTGGAGCCAGCACCGGAAGCTAAGGCGCTTAAGCCCAGTGGAGTTGT 835
|||||| || || ||| | || || |||||||||||||||||| |||| || |||||| |
Sbjct 767 ACCGTCGAAAGATGTGAAACCGGCGCCGGAAGCTAAGGCGCTTGAGCCTAGCGGAGTTAT 826
Query 836 AAGCAACTTTAC 847
||| |||| |||
Sbjct 827 AAGTAACTATAC 838
> Ahg484340 jgi|Araly1|484340|fgenesh2_kg.5__332__AT3G25780.1
Length=954
Score = 584 bits (316), Expect = 4e-166
Identities = 635/786 (81%), Gaps = 33/786 (4%)
Strand=Plus/Plus
Query 94 CTTCTTCTACAATCTCTCTCCAATCTATCTCCATGACAACTCTCAACAATCTCTCATATA 153
||||| || | || |||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 52 CTTCTGCTGCTATGTCTCTCGAATCTATCTCTATGACAACTCTCAACAATCTCTCCCGTA 111
Query 154 GTAAACAATTTCATCGAAGCTCTCTTCTTGGTTTCTCTAA-ATCCTTCCAAAATTTTGGT 212
| | |||| |||| |||||||||||||||||||||| || ||| |||||||| ||||
Sbjct 112 ATCATCAATCTCATAGAAGCTCTCTTCTTGGTTTCTC-AAGATCTTTCCAAAACCTTGGG 170
Query 213 ATCTCATCTAACGGTCCAGGTTCCTCCTCTCCGA-CAAGTTTC-ACGCCCAAGAAGAAAC 270
||||||||||||||||||| || || ||| |||| |||| || || | ||||| |
Sbjct 171 ATCTCATCTAACGGTCCAGATTTCTTCTC-CCGATCAAG-ATCTACTACTTCCAAGAACC 228
Query 271 TC-ACTCCTACTCGAGCTCTC-TCTCAGAACTT-GGG--A-AATACCGAAAACCCCAGAC 324
|| || |||||||||| || ||| ||| || ||| | || || |||||| ||||||
Sbjct 229 TCAAC-GTTACTCGAGCTTTCTTCT-GGAA-TTGGGGCAAGAAGACTGAAAACTCCAGAC 285
Query 325 CAAGCAAAG-TTCAAGAACTGAGCGTGTACGAAATCAATGATTTAGATCGACACAGCCCA 383
|||| ||| | |||||||| | ||||||||| | || || |||| || |||| |||
Sbjct 286 CAAG-TAAGATCCAAGAACTAAACGTGTACGAGCTAAACGAAGGAGATAGAAACAGTCCA 344
Query 384 AAAATTCTTAAAAAC-GC-ATTCAGCTTTAG-G-TTTGGTCTCGGAGATCTCGTCCCATT 439
| |||||||| | || | | | || | | | ||||||| ||||| || |||||
Sbjct 345 GCAGTTCTTAAACTCGGCAAAAAACCAACAGAGCTCT-GTCTCGGCGATCTTGTACCATT 403
Query 440 CACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGGCTGGTCTCTG 499
||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 404 CACCAACAAACTCTACACCGGCGATCTCAAGAAACGCGTCGGAATCACAGCAGGTCTCTG 463
Query 500 CGT-TGTGATCGAACACGTCCCTGAGAAGAACGGTGATAGATTCGAAGCT-ACGTACAGC 557
||| | ||||| ||||||| || ||||||| |||||| |||||||||||| || ||||||
Sbjct 464 CGTCT-TGATCCAACACGTTCCGGAGAAGAGCGGTGACAGATTCGAAGCTAAC-TACAGC 521
Query 558 TTCTACTTCGGAGACTATGGCCACTTGTCCGTACAAGGACCA-TACTTGACTTACGAGGA 616
||||| ||||| |||||||| |||||||| ||||||||| || ||| |||||||||| ||
Sbjct 522 TTCTATTTCGGTGACTATGGTCACTTGTCTGTACAAGGA-CAGTACCTGACTTACGAAGA 580
Query 617 TTCGTTCCTTGCCATCACTGGTGGCGCTGGAATCTTTGAAGGTGCCTACGGACAGGTTAA 676
|||| || || |||| |||||| | ||||||||||||||||| ||||||||||||||
Sbjct 581 CACGTTTCTCGCTATCATTGGTGGTTCAGGAATCTTTGAAGGTGCGTACGGACAGGTTAA 640
Query 677 GCTTCAACAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTATCTTAAAGGATTGGC 736
||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 641 GCTTCGTCAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAGGGTTGGC 700
Query 737 TAATGATTTGCCACTGGAGCTCA-TAGGAACTCCGGT-ACCACCGTCTAAGGACGTGGAG 794
|||||||||||| |||||||| | | ||||| ||| || ||||| || || ||| |
Sbjct 701 TAATGATTTGCCGCTGGAGCTAACT-GGAACGGTGGTTACG-CCGTCGAAAGATGTGAAA 758
Query 795 CCAGCACCGGAAGCTAAGGCGCTTAAGCCCAGTGGAGTTGTAAGCAACTTTACAAATTA- 853
|| || ||||||||||||||| | |||| || |||||| | || |||||||| |||||
Sbjct 759 CCGGCGCCGGAAGCTAAGGCGATGGAGCCTAGCGGAGTTATTAGTAACTTTACTAATTAA 818
Query 854 GTGAAT 859
|| |||
Sbjct 819 GTAAAT 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5