BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25770.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484339 jgi|Araly1|484339|fgenesh2_kg.5__331__AT3G25770.1 1195 0.0
Ahg936257 jgi|Araly1|936257|scaffold_500448.1 1061 0.0
Ahg484340 jgi|Araly1|484340|fgenesh2_kg.5__332__AT3G25780.1 616 1e-175
> Ahg484339 jgi|Araly1|484339|fgenesh2_kg.5__331__AT3G25770.1
Length=850
Score = 1195 bits (647), Expect = 0.0
Identities = 762/817 (93%), Gaps = 10/817 (1%)
Strand=Plus/Plus
Query 58 ATCAAGTAG-AGTTTCTTCTCAAGTCtttttattttatttttATCAATGGCTTCTTCAGC 116
||||| ||| ||||||||||| |||| |||| || |||| | ||||||||||||| ||
Sbjct 39 ATCAAATAGCAGTTTCTTCTCTAGTC--TTTA--TTGTTTTGAGCAATGGCTTCTTCGGC 94
Query 117 AGTGTCTCTCCAATCCATCTCTATGACAACTCTCAACAATCTTTCATGTAATCAACAATT 176
| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 95 AATGTCTCTCCAATCCATCTCCATGACAACTCTCAACAATCTCTCATGTAATCAACAATT 154
Query 177 TCATCGAAGCTCTCTTCTTGGTTCCTCTAAATCCTTCCAAAATCTTGGTATCTCATCTAA 236
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 155 TCATCGAAGCTCTCTTCTTGGTTTCTCTAAATCCTTTCAAAATCTTGGTATCTCATCTAA 214
Query 237 CGGTTCAGATTTCTCCTATCCATCAAGTTTCACTGCCAAGAAGAACCTCACTGCTTCTCG 296
||| |||||| ||||| |||||||||||||||| |||||||||| ||||||||||||||
Sbjct 215 TGGTCCAGATTCCTCCTCTCCATCAAGTTTCACTCCCAAGAAGAAACTCACTGCTTCTCG 274
Query 297 AG---CTCTCTCCCAAAACGGGAATATCGAAAACCCTAGACCAAGCAAAGTTCAAGAACT 353
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 AGCTACTCTCTCCCAGAACGGGAATATCGAAAACCCTAGACCAAGCAAAGTTCAAGAACT 334
Query 354 GAGTGTGTACGAAATCAACGAATTAGATCGACACAGCCCCAAGATTCTTAAAAACGCATT 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 335 GAGTGTGTACGAAATCAACGAATTAGATCGACACAGCCCCAAGATTCTTAAAAACGCCTT 394
Query 414 CAGCTTAATGTTCGGTCTCGGAGATCTCGTACCATTCACAAACAAACTCTACACAGGCGA 473
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 395 CAGCTTAATGTTCGGTCTCGGAGATCTTGTTCCATTCACAAACAAACTCTACACCGGCGA 454
Query 474 TCTCAAGAAACGCGTGGGCATCACGGCAGGTCTCTGCGTCGTCATCGAACACGTCCCAGA 533
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 455 TCTCAAGAAACGCGTGGGAATCACGGCAGGTCTCTGCGTCGTGATCGAACACGTCCCTGA 514
Query 534 GAAGAAAGGTGAAAGATTCGAAGCTACTTATAGCTTCTACTTCGGAGACTATGGCCACTT 593
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 515 GAAGAACGGTGACAGATTCGAAGCTACTTACAGCTTCTACTTCGGAGACTATGGCCACTT 574
Query 594 GTCCGTTCAAGGACCATACTTGACTTACGAGGATTCGTTCCTCGCCATCACTGGTGGTGC 653
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 575 GTCCGTACAAGGACCATACTTGACTTACGAGGACTCGTTCCTCGCCATCACTGGTGGCGC 634
Query 654 TGGAATCTTTGAAGGTGCCTACGGACAGGTCAAGCTTCAACAGCTTGTGTATCCGACAAA 713
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 635 TGGAATCTTCGAAGGTGCGTACGGACAGGTTAAGCTTCAACAGCTTGTGTATCCGACAAA 694
Query 714 ACTGTTCTACACTTTTTACCTTAAAGGGTTGGCTAATGATTTGCCGTTGGAGCTCACCGG 773
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 695 ACTGTTCTACACTTTTTACCTTAAAGGGTTGGCTAATGATTTGCCATTGGAGCTCACCGG 754
Query 774 AACACCGGTACCGCCGTCTAAGGACAT-AGAGCCGGCGCCGGAAGCTAAGGCACTGGAGC 832
||| |||||||| ||||| || || | | | |||||||||||||||||||| || ||||
Sbjct 755 AACGCCGGTACCACCGTCGAAAGATGTGAAA-CCGGCGCCGGAAGCTAAGGCGCTTGAGC 813
Query 833 CTAGCGGAGTTATAAGTAACTATACCAACTAATTCAT 869
||||||||||||||||||||||||||||||||| |||
Sbjct 814 CTAGCGGAGTTATAAGTAACTATACCAACTAATGCAT 850
Score = 78.7 bits (42), Expect = 8e-14
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1 AAATCACTCACCACATAAAGTAAAAGTCTCATCTCTTCATAAAATAGC 48
|||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1 AAATCACTCACCACATAAAGTAAAAGTCCCATCTCTTCATCAAATAGC 48
> Ahg936257 jgi|Araly1|936257|scaffold_500448.1
Length=802
Score = 1061 bits (574), Expect = 0.0
Identities = 724/797 (91%), Gaps = 7/797 (1%)
Strand=Plus/Plus
Query 84 ttttattttattttt-ATCAATGGCTTCTTCAGCAGTGTCTCTCCAATCCATCTCTATGA 142
|||| |||| ||||| | ||||| ||||||| ||| ||||| ||||||| ||||| ||||
Sbjct 1 TTTTCTTTTTTTTTTGAGCAATGTCTTCTTCTGCAATGTCTTTCCAATCTATCTCCATGA 60
Query 143 CAACTCTCAACAATCTTTCATGTAATCAACAATTTCATCGAAGCTCTCTTCTTGGTTCCT 202
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CAACTCTCAACAATCTCTCATGTAATCAACAATTTCATCGAAGCTCTCTTCTTGGTTTCT 120
Query 203 CTAAATCCTTCCAAAATCTTGGTATCTCATCTAACGGTTCAGATTTCTCCTATCCATCAA 262
|||||||||||||||||||||||||||||||||| ||| |||||| ||||| | |||||
Sbjct 121 CTAAATCCTTCCAAAATCTTGGTATCTCATCTAATGGTCCAGATTCCTCCTCTAGATCAA 180
Query 263 GTTTCACTGCCAAGAAGAACCTCACTGCTTCTCGAGCTCTCTCCCAAAAC--GGG-AATA 319
|||||||| |||||||||| |||||| || |||||||||||||||| ||| ||| ||||
Sbjct 181 GTTTCACTCCCAAGAAGAAACTCACTCCTACTCGAGCTCTCTCCCAGAACTTGGGAAATA 240
Query 320 TCGAAAACCCTAGACCAAGCAAAGTTCAAGAACTGAGTGTGTACGAAATCAACGAATTAG 379
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 241 CCGAAAACCCCAGACCAAGTAAAGTTCAAGAACTGAGCGTGTACGAAATCAACGATTTAG 300
Query 380 ATCGACACAGCCCCAAGATTCTTAAAAACGCATTCAGCTTAATGTTCGGTCTCGGAGATC 439
|| |||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 ATAGACACAGCCCAAAAATTCTTAAAAACGCATTCAGCTTTATGTTCGGTCTCGGAGATC 360
Query 440 TCGTACCATTCACAAACAAACTCTACACAGGCGATCTCAAGAAACGCGTGGGCATCACGG 499
| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 361 TTGTCCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGG 420
Query 500 CAGGTCTCTGCGTCGTCATCGAACACGTCCCAGAGAAGAAAGGTGAAAGATTCGAAGCTA 559
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 CAGGTCTCTGTGTCGTCATCGAACACGTCCC---GAAGAAAGGTGAAAGATTCGAAGCTA 477
Query 560 CTTATAGCTTCTACTTCGGAGACTATGGCCACTTGTCCGTTCAAGGACCATACTTGACTT 619
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 478 CTTATAGCTTCTACTTCGGAGACTATGGACACTTGTCCGTTCAAGGACCGTACTTGACTT 537
Query 620 ACGAGGATTCGTTCCTCGCCATCACTGGTGGTGCTGGAATCTTTGAAGGTGCCTACGGAC 679
||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 538 ACGAGGACTCGTTCCTCGCCATCACTGGTGGCGCTGGAATCTTCGAAGGTGCGTACGGAC 597
Query 680 AGGTCAAGCTTCAACAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAG 739
| || |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 AAGTTAAGCTTCAACAGATTGTGTATCCGACAAAATTGTTCTACACTTTTTACCTTAAAG 657
Query 740 GGTTGGCTAATGATTTGCCGTTGGAGCTCACCGGAACACCGGTACCGCCGTCTAAGGACA 799
||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 658 GGTTGGCTAATGATTTGCCATTGGAGCTCACCGGAACGCCGGTACCCCCGTCTAAGGACG 717
Query 800 TAGAGCCGGCGCCGGAAGCTAAGGCACTGGAGCCTAGCGGAGTTATAAGTAACTATACCA 859
||||| || |||||||||||||| || ||||| ||||||||| |||| |||| ||| |
Sbjct 718 CGGAGCCAGCACCGGAAGCTAAGGCGCTTGAGCCCAGCGGAGTTGTAAGCAACTTTACAA 777
Query 860 ACTAATTCATGAAATTA 876
| || | || ||||||
Sbjct 778 ATTAGTGAATAAAATTA 794
> Ahg484340 jgi|Araly1|484340|fgenesh2_kg.5__332__AT3G25780.1
Length=954
Score = 616 bits (333), Expect = 1e-175
Identities = 630/769 (82%), Gaps = 37/769 (5%)
Strand=Plus/Plus
Query 119 TGTCTCTCCAATCCATCTCTATGACAACTCTCAACAATCTTTCATGTAATCAACAATTTC 178
|||||||| |||| |||||||||||||||||||||||||| || ||||||| |||| ||
Sbjct 64 TGTCTCTCGAATCTATCTCTATGACAACTCTCAACAATCTCTCCCGTAATCATCAATCTC 123
Query 179 ATCGAAGCTCTCTTCTTGGTTCCTCTAA-ATCCTTCCAAAATCTTGGTATCTCATCTAAC 237
|| |||||||||||||||||| ||| || ||| |||||||| ||||| ||||||||||||
Sbjct 124 ATAGAAGCTCTCTTCTTGGTTTCTC-AAGATCTTTCCAAAACCTTGGGATCTCATCTAAC 182
Query 238 GGTTCAGATTTCTCCTATCC-ATCAAGTTTC-ACTGCCAAGAAGAACCTC-ACTGCTT-C 293
||| ||||||||| || || |||||| || ||| | ||||||||| || | || |
Sbjct 183 GGTCCAGATTTCTTCT-CCCGATCAAG-ATCTACTACTTCCAAGAACCTCAAC-G-TTAC 238
Query 294 TCGAGCTCTC-TC-CCAAAACGGG-AA-TA-TC-GAAAAC-CCTAGACCAAGCAAAG-TT 345
||||||| || || || ||| || | | |||||| || |||||||| ||| |
Sbjct 239 TCGAGCTTTCTTCTGGAATTGGGGCAAGAAGACTGAAAACTCC-AGACCAAG-TAAGATC 296
Query 346 CAAGAACTGAGTGTGTACGAAATCAACGAATTAGATCGACACAGCCCCAAG-A-TTCTTA 403
|||||||| | |||||||| | |||||| |||| || |||| || || | ||||||
Sbjct 297 CAAGAACTAAACGTGTACGAGCTAAACGAAGGAGATAGAAACAG-TCC-AGCAGTTCTTA 354
Query 404 AAAAC-GCATTCAGCTTA-A-TGTTCGGTCTCGGAGATCTCGTACCATTCACAAACAAAC 460
|| | ||| | | | | | || ||||||| ||||| ||||||||||| |||||||
Sbjct 355 AACTCGGCAAAAAACCAACAGAGCTCTGTCTCGGCGATCTTGTACCATTCACCAACAAAC 414
Query 461 TCTACACAGGCGATCTCAAGAAACGCGTGGGCATCACGGCAGGTCTCTGCGTCGTCATCG 520
||||||| |||||||||||||||||||| || ||||| ||||||||||||||| | |||
Sbjct 415 TCTACACCGGCGATCTCAAGAAACGCGTCGGAATCACAGCAGGTCTCTGCGTCTTGATCC 474
Query 521 AACACGTCCCAGAGAAGAAAGGTGAAAGATTCGAAGCT-ACTTATAGCTTCTACTTCGGA 579
||||||| || ||||||| ||||| |||||||||||| || || |||||||| |||||
Sbjct 475 AACACGTTCCGGAGAAGAGCGGTGACAGATTCGAAGCTAAC-TACAGCTTCTATTTCGGT 533
Query 580 GACTATGGCCACTTGTCCGTTCAAGGACCA-TACTTGACTTACGAGGATTCGTTCCTCGC 638
|||||||| |||||||| || |||||| || ||| |||||||||| || |||| |||||
Sbjct 534 GACTATGGTCACTTGTCTGTACAAGGA-CAGTACCTGACTTACGAAGACACGTTTCTCGC 592
Query 639 CATCACTGGTGGTGCTGGAATCTTTGAAGGTGCCTACGGACAGGTCAAGCTTCAACAGCT 698
|||| ||||||| | ||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 593 TATCATTGGTGGTTCAGGAATCTTTGAAGGTGCGTACGGACAGGTTAAGCTTCGTCAGCT 652
Query 699 TGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAGGGTTGGCTAATGATTTGCC 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAGGGTTGGCTAATGATTTGCC 712
Query 759 GTTGGAGCTCACCGGAACACCGGT-ACCGCCGTCTAAGGACAT-AGAGCCGGCGCCGGAA 816
| ||||||| || ||||| ||| || |||||| || || | | | ||||||||||||
Sbjct 713 GCTGGAGCTAACTGGAACGGTGGTTAC-GCCGTCGAAAGATGTGAAA-CCGGCGCCGGAA 770
Query 817 GCTAAGGC-ACTGGAGCCTAGCGGAGTTATAAGTAACTATACCAACTAA 864
|||||||| | ||||||||||||||||||| ||||||| ||| || |||
Sbjct 771 GCTAAGGCGA-TGGAGCCTAGCGGAGTTATTAGTAACTTTACTAATTAA 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5