BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25780.1
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484340 jgi|Araly1|484340|fgenesh2_kg.5__332__AT3G25780.1 1301 0.0
Ahg484339 jgi|Araly1|484339|fgenesh2_kg.5__331__AT3G25770.1 697 0.0
Ahg936257 jgi|Araly1|936257|scaffold_500448.1 654 0.0
> Ahg484340 jgi|Araly1|484340|fgenesh2_kg.5__332__AT3G25780.1
Length=954
Score = 1301 bits (704), Expect = 0.0
Identities = 875/954 (92%), Gaps = 25/954 (3%)
Strand=Plus/Plus
Query 55 TTAAACTCTTCTTGATCAATGGCTTCTTCTTCTGCTGCTATGTCTCTTGAATCCATCTCT 114
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 24 TTAAAGTCTTCTTGATCAATGGCTTCTTCTTCTGCTGCTATGTCTCTCGAATCTATCTCT 83
Query 115 ATGACAACTCTCAACAATCTCTCTCGTAATCATCAATCTCACCGCAGTTCTCTTCTTGGT 174
||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||
Sbjct 84 ATGACAACTCTCAACAATCTCTCCCGTAATCATCAATCTCATAGAAGCTCTCTTCTTGGT 143
Query 175 TTCTCAAGATCTTTCCAAAACCTTGGAATCTCATCTAACGGTCCAGATTTCTCCTCCCGA 234
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 144 TTCTCAAGATCTTTCCAAAACCTTGGGATCTCATCTAACGGTCCAGATTTCTTCTCCCGA 203
Query 235 TCAAGATCTACTACTTCCAAGAACCTCAACGTTACTCGAGCTTTCTTCTGGAATTGGGGC 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TCAAGATCTACTACTTCCAAGAACCTCAACGTTACTCGAGCTTTCTTCTGGAATTGGGGC 263
Query 295 AAGAAGACCGAAAACTCCAGACCAAGTAAGATCCAAGAACTAAACGTGTATGAGCTCAAC 354
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 264 AAGAAGACTGAAAACTCCAGACCAAGTAAGATCCAAGAACTAAACGTGTACGAGCTAAAC 323
Query 355 GAAGGAGATAGAAACAGTCCAGCAGTTCTTAAACTCGGCAAGAAACCAACAGAGCTTTGT 414
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 324 GAAGGAGATAGAAACAGTCCAGCAGTTCTTAAACTCGGCAAAAAACCAACAGAGCTCTGT 383
Query 415 CTCGGAGATCTCGTCCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTG 474
||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 384 CTCGGCGATCTTGTACCATTCACCAACAAACTCTACACCGGCGATCTCAAGAAACGCGTC 443
Query 475 GGAATCACGGCAGGTCTCTGCGTTTTGATCCAACACGTTCCTGAAAAGAGCGGTGACAGA 534
|||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 444 GGAATCACAGCAGGTCTCTGCGTCTTGATCCAACACGTTCCGGAGAAGAGCGGTGACAGA 503
Query 535 TTCGAAGCTAGTTACAGCTTCTACTTT-GGTGACTATGGTCACTTGTCTGTACAAGGACA 593
|||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 504 TTCGAAGCTAACTACAGCTTCTA-TTTCGGTGACTATGGTCACTTGTCTGTACAAGGACA 562
Query 594 ATACTTGACTTATGAAGACACGTTCCTCGCTGTCACTGGTGGCTCTGGAATCTTTGAAGG 653
||| ||||||| ||||||||||| |||||| ||| |||||| || ||||||||||||||
Sbjct 563 GTACCTGACTTACGAAGACACGTTTCTCGCTATCATTGGTGGTTCAGGAATCTTTGAAGG 622
Query 654 TGCGTACGGACAGGTTAAGCTTCGTCAGCTTGTGTATCCGACAAAACTGTTCTACACTTT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TGCGTACGGACAGGTTAAGCTTCGTCAGCTTGTGTATCCGACAAAACTGTTCTACACTTT 682
Query 714 TTACCTTAAAGGGTTAGCTAATGATTTACCGCTGGAGCTTACTGGAACGGCGGTTACGCC 773
||||||||||||||| ||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 683 TTACCTTAAAGGGTTGGCTAATGATTTGCCGCTGGAGCTAACTGGAACGGTGGTTACGCC 742
Query 774 GTCGAAGGATGTGAAACCGGCACCGGAAGCTAAGGCGATGGAGCCTAGTGGAGTTATAAG 833
|||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 743 GTCGAAAGATGTGAAACCGGCGCCGGAAGCTAAGGCGATGGAGCCTAGCGGAGTTATTAG 802
Query 834 TAACTTTACTAATTAAGTAA-TTAGCTGTTTAATAGTTGTTTTGTTTTGTAATAGAATAT 892
|||||||||||||||||||| |||| ||| | | || | |||||||||||| |||| |
Sbjct 803 TAACTTTACTAATTAAGTAAATTAGTTGTGTGTTT-TTCTCTTGTTTTGTAATCGAATCT 861
Query 893 TTTGATGAGTTGTGTGAGGTTAGTTAATGATGTGTTGAGGGAATAAAGTATTTATTTTGA 952
||||||||||||||||||| | ||| | | | |||||||||||||
Sbjct 862 TTTGATGAGTTGTGTGAGG---G--AAT-A-------A---A-----GTATTTATTTTGA 900
Query 953 TGTGACTTTATTGATTACAACTGGTCTTTCTACAACGTGGAACTGTTGTACTCG 1006
||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 901 CGTGACTTTATTGATTACGACTGGTCTTTCTACAACGTGGAATTGTTGTACTCG 954
> Ahg484339 jgi|Araly1|484339|fgenesh2_kg.5__331__AT3G25770.1
Length=850
Score = 697 bits (377), Expect = 0.0
Identities = 654/783 (84%), Gaps = 38/783 (5%)
Strand=Plus/Plus
Query 83 CTTCTGCTGCTATGTCTCTTGAATCCATCTCTATGACAACTCTCAACAATCTCTC-TCGT 141
||||| | || |||||||| |||||||||| ||||||||||||||||||||||| | ||
Sbjct 85 CTTCTTCGGCAATGTCTCTCCAATCCATCTCCATGACAACTCTCAACAATCTCTCAT-GT 143
Query 142 AATCATCAATCTCACCGCAGTTCTCTTCTTGGTTTCTC-AAGAT-CTTTCCAAAACCTTG 199
||||| |||| ||| || || ||||||||||||||||| || || |||| ||||| ||||
Sbjct 144 AATCAACAATTTCATCGAAGCTCTCTTCTTGGTTTCTCTAA-ATCCTTT-CAAAATCTTG 201
Query 200 GAATCTCATCTAACGGTCCAGATTTCTCCTC-CCGATCAAGATCTACTACTTCC---AAG 255
| ||||||||||| |||||||||| |||||| || |||||| | | | ||| || |||
Sbjct 202 GTATCTCATCTAATGGTCCAGATTCCTCCTCTCC-ATCAAG-T-TTC-ACTCCCAAGAAG 257
Query 256 AACCTCAAC-G-TTACTCGAGCTTTCT-TCTGGAATTGGGGCAAGAAGACCGAAAACTCC 312
|| ||| || | || ||||||| | || ||| | | | ||| | ||||||| ||
Sbjct 258 AAACTC-ACTGCTT-CTCGAGC-TACTCTCTCCCA---GAACGGGAATATCGAAAAC-CC 310
Query 313 -AGACCAAG-TAAGATCCAAGAACTAAACGTGTATGAGCTCAACGAAGGAGATAGAAACA 370
|||||||| ||| | |||||||| | ||||| || |||||||| |||| || |||
Sbjct 311 TAGACCAAGCAAAG-TTCAAGAACTGAGTGTGTACGAAATCAACGAATTAGATCGACACA 369
Query 371 GTCCAGC-AG-TTCTTAAACTCGGCAAGAAACCAACAGAGCTT-TGTCTCGGAGATCTCG 427
| || | || |||||||| | || | | | | | || ||||||||||||| |
Sbjct 370 G-CC-CCAAGATTCTTAAAAAC-GCCTTCAGCTTA-A-TG-TTCGGTCTCGGAGATCTTG 423
Query 428 TCCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGGCAG 487
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TTCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGGCAG 483
Query 488 GTCTCTGCGTTTTGATCCAACACGTTCCTGAAAAGAGCGGTGACAGATTCGAAGCTAGTT 547
|||||||||| ||||| ||||||| ||||| |||| |||||||||||||||||||| ||
Sbjct 484 GTCTCTGCGTCGTGATCGAACACGTCCCTGAGAAGAACGGTGACAGATTCGAAGCTACTT 543
Query 548 ACAGCTTCTACTTTGGTGACTATGGTCACTTGTCTGTACAAGGACAATACTTGACTTATG 607
||||||||||||| || |||||||| |||||||| |||||||||| |||||||||||| |
Sbjct 544 ACAGCTTCTACTTCGGAGACTATGGCCACTTGTCCGTACAAGGACCATACTTGACTTACG 603
Query 608 AAGACACGTTCCTCGCTGTCACTGGTGGCTCTGGAATCTTTGAAGGTGCGTACGGACAGG 667
| ||| |||||||||| ||||||||||| |||||||||| |||||||||||||||||||
Sbjct 604 AGGACTCGTTCCTCGCCATCACTGGTGGCGCTGGAATCTTCGAAGGTGCGTACGGACAGG 663
Query 668 TTAAGCTTCGTCAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAGGGT 727
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTAAGCTTCAACAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAGGGT 723
Query 728 TAGCTAATGATTTACCGCTGGAGCTTACTGGAACGGCGGTTACG-CCGTCGAAGGATGTG 786
| ||||||||||| || ||||||| || |||||| |||| || |||||||| ||||||
Sbjct 724 TGGCTAATGATTTGCCATTGGAGCTCACCGGAACGCCGGT-ACCACCGTCGAAAGATGTG 782
Query 787 AAACCGGCACCGGAAGCTAAGGCGATGGAGCCTAGTGGAGTTATAAGTAACTTTACTAAT 846
|||||||| ||||||||||||||| | |||||||| |||||||||||||||| ||| ||
Sbjct 783 AAACCGGCGCCGGAAGCTAAGGCGCTTGAGCCTAGCGGAGTTATAAGTAACTATACCAAC 842
Query 847 TAA 849
|||
Sbjct 843 TAA 845
> Ahg936257 jgi|Araly1|936257|scaffold_500448.1
Length=802
Score = 654 bits (354), Expect = 0.0
Identities = 644/780 (83%), Gaps = 35/780 (4%)
Strand=Plus/Plus
Query 82 TCTTCTGCTGCTATGTCTCTT-GAATCCATCTCTATGACAACTCTCAACAATCTCTC-TC 139
|||||| |||| |||||| || |||| ||||| ||||||||||||||||||||||| |
Sbjct 24 TCTTCTTCTGCAATGTCT-TTCCAATCTATCTCCATGACAACTCTCAACAATCTCTCAT- 81
Query 140 GTAATCATCAATCTCACCGCAGTTCTCTTCTTGGTTTCTC-AAGATCTTTCCAAAACCTT 198
||||||| |||| ||| || || ||||||||||||||||| || ||| |||||||| |||
Sbjct 82 GTAATCAACAATTTCATCGAAGCTCTCTTCTTGGTTTCTCTAA-ATCCTTCCAAAATCTT 140
Query 199 GGAATCTCATCTAACGGTCCAGATTTCTCCTCCCGATCAAGATCTACTACTTCC---AAG 255
|| ||||||||||| |||||||||| |||||| ||||||| | | | ||| || |||
Sbjct 141 GGTATCTCATCTAATGGTCCAGATTCCTCCTCTAGATCAAG-T-TTC-ACTCCCAAGAAG 197
Query 256 AACCTCAACGT--TACTCGAGCTTTCTTCTGGAA-TTGGGGCAAGAAGACCGAAAACTCC 312
|| ||| || | |||||||||| ||| | ||| || ||| | || ||||||||| ||
Sbjct 198 AAACTC-AC-TCCTACTCGAGCTCTCTCCCAGAACTT-GGG--A-AATACCGAAAACCCC 251
Query 313 AGACCAAGT-AAGATCCAAGAACTAAACGTGTATGAGCTCAACGAAGGAGATAGAAACAG 371
||||||||| ||| | |||||||| | |||||| || ||||||| ||||||| ||||
Sbjct 252 AGACCAAGTAAAG-TTCAAGAACTGAGCGTGTACGAAATCAACGATTTAGATAGACACAG 310
Query 372 TCCAGCAGTTCTTAAACTCGGCAAGAAACCAACAGAGCTT-TGTCTCGGAGATCTCGTCC 430
||| | |||||||| | || | | | | | || ||||||||||||| ||||
Sbjct 311 CCCAAAAATTCTTAAAAAC-GC-ATTCAGCTTTA-TG-TTCGGTCTCGGAGATCTTGTCC 366
Query 431 CATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGGCAGGTC 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGGCAGGTC 426
Query 491 TCTGCGTTTTGATCCAACACGTTCCTGAA-AAGAGCGGTGACAGATTCGAAGCTAGTTAC 549
|||| || | ||| ||||||| || ||| || || | ||| ||||||||||||| |||
Sbjct 427 TCTGTGTCGTCATCGAACACGTCCC-GAAGAA-AG-G-TGAAAGATTCGAAGCTACTTAT 482
Query 550 AGCTTCTACTTTGGTGACTATGGTCACTTGTCTGTACAAGGACAATACTTGACTTATGAA 609
||||||||||| || |||||||| |||||||| || ||||||| ||||||||||| ||
Sbjct 483 AGCTTCTACTTCGGAGACTATGGACACTTGTCCGTTCAAGGACCGTACTTGACTTACGAG 542
Query 610 GACACGTTCCTCGCTGTCACTGGTGGCTCTGGAATCTTTGAAGGTGCGTACGGACAGGTT 669
||| |||||||||| ||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct 543 GACTCGTTCCTCGCCATCACTGGTGGCGCTGGAATCTTCGAAGGTGCGTACGGACAAGTT 602
Query 670 AAGCTTCGTCAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAGGGTTA 729
||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 603 AAGCTTCAACAGATTGTGTATCCGACAAAATTGTTCTACACTTTTTACCTTAAAGGGTTG 662
Query 730 GCTAATGATTTACCGCTGGAGCTTACTGGAACGGCGGTTACGCC-GTCGAAGGATGTGAA 788
||||||||||| || ||||||| || |||||| |||| || || ||| ||||| | | |
Sbjct 663 GCTAATGATTTGCCATTGGAGCTCACCGGAACGCCGGT-ACCCCCGTCTAAGGACGCGGA 721
Query 789 ACCGGCACCGGAAGCTAAGGCGATGGAGCCTAGTGGAGTTATAAGTAACTTTACTAATTA 848
|| |||||||||||||||||| | ||||| || |||||| |||| |||||||| |||||
Sbjct 722 GCCAGCACCGGAAGCTAAGGCGCTTGAGCCCAGCGGAGTTGTAAGCAACTTTACAAATTA 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37436704494
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5