BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25790.1
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322721 jgi|Araly1|322721|fgenesh1_pm.C_scaffold_5000265 1596 0.0
> Ahg322721 jgi|Araly1|322721|fgenesh1_pm.C_scaffold_5000265
Length=1065
Score = 1596 bits (864), Expect = 0.0
Identities = 1000/1065 (94%), Gaps = 12/1065 (1%)
Strand=Plus/Plus
Query 70 ATGATCAAGAACTTAAGTAATATGAAGAATGACAATCAGAAACGTGAAAAATGTTGCGAG 129
||||| ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct 1 ATGATTAAGAACTTAAGTACTATGAAGAATTACAATCAGAAACGTGAAAGATGTTGCGAG 60
Query 130 TACATCGAAGCTCTCGAAGAAGAACGTCGCAAGATCAATGTTTTCCAACGCGAGCTTCCT 189
| ||||||||| || ||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 61 TTCATCGAAGCCCTTGAAGAAGAACGCCGCAAGATCAATGTCTTCCAACGCGAGTTTCCT 120
Query 190 CTTTGCGTAGAGCTCGTGACTCAAGCGATTGAGGCGTATAAGAGGGAGATATCAGGGACG 249
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTTGCTTAGAGCTCGTGACACAAGCGATTGAGGCGTATAAGAGGGAGATATCAGGGACG 180
Query 250 TCGACGGATAACTTATACGGACAGTCGGAGTGCTCAGAGCAGACCACCGGAGAATGTGGG 309
||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 181 ACGACGAATAACTTATACGGACAATCGGAGTGCTCAGAGCAGACAACCGGAGAATGTGGG 240
Query 310 CGCATCTTGGATCTGTTCATACCAATCAAACACTCTTCGACCTCCATAGAAGAAGAGGTT 369
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 241 CGCATCTTGGATCTGTTCATACCAATCAAACACTCTTCGACCTCCATAGAAGA-G-G-TT 297
Query 370 GATGACAAAGATGATGATGATGAAGAACACCAGTCTCATGAAACCGACATAGATTTTGAT 429
|||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 298 GATGACAAAGATCATGATGATGAAGAACACGAATCTCATGAAACCGACATAGATTTTGAT 357
Query 430 GACAAGAACATGAAATCTGAATGGCTCAAGTCTGTTCAGCTCTGGAACCAATCCGACGCA 489
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 GACAAGAACATGAAATCTGAATGGCTTAAGTCTGTTCAGCTCTGGAACCAATCCGACATT 417
Query 490 GTTGTTTCTAATAATAGACAGGATCGCTCACAAGAAAAGACAGAGACGCTGGTAGAGTTG 549
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 GTTGTTTCTAATA---GACAGGATTGCTCACAAGAAAAGACAGAGACGCTGGTAGAGTTG 474
Query 550 ATAAAAATAAACGATGAAGCAGCGAAGAAAAACAACAACATAAAATCACCGGTGACTACT 609
||||| |||||||||||||||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 475 ATAAATATAAACGATGAAGCAGCGGAGAAAAACAACAACATAGAATCACCGGCGACTACT 534
Query 610 AGCGATGGTGGCAGTGGCGGTGGCGGTGGCAGAAGAGGGCAGAGAAAGAATAGGCGGTGT 669
|||| | |||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 535 AGCG--G-TGGCAGTGGCCGTGGCAGTGGCAGAAGAGGGCAGAGAAAGCATAGGCGGTGT 591
Query 670 TGGTCGCAAGAGTTACACAGACGCTTCTTGAACGCTCTTAAACAACTTGGTGGCCCTCAT 729
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 592 TGGTCGCAAGAGTTACACAGAAGCTTCTTGAGCGCTCTTAAACAACTTGGTGGCCCTCAT 651
Query 730 GTAGCTACGCCGAAACAGATAAGAGATATAATGAAGGTTGATGGGTTAACAAATGATGAA 789
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 652 GTAGCTACGCCGAAACAGATAAGAGAGCTAATGAAGGTTGATGGGTTAACAAATGATGAA 711
Query 790 GTCAAAAGTCATTTACAGAAATATAGGCTGCATGCAAGACGGCCAAGCCAAACAACACCG 849
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 712 GTCAAAAGTCATTTACAGAAATATAGGCTGCATGCAAGACGGCCTAGCCAAACAACACCT 771
Query 850 AACAACAGAAACTCTCAAACGCAACATTTCGTGGTGGTTGGTGGAATATGGGTCCCACAG 909
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 772 AACAACAAAAACTCTCAAACGCAACATTTCGTGGTGGTTGGTGGAATATGGATCCCACAG 831
Query 910 ACTAACCATTCAACGGCCAACGCAGTCAACGCCGTCGCATCGGGTGAGACCACC---GGG 966
|||||||| || ||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 832 ACTAACCACTCCACGGCCAACGCAGTCAACGCCCTCGCATCGGGTGAGACCACCACCGGG 891
Query 967 ATTTATGGGCCTATGGTCAGTTCGTTGCCGTCCGAGTGGCCGAGGCATTCCAATTTTGGT 1026
||||| ||||||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct 892 ATTTACGGGCCTATGGTCAGTCCGTTACCGTCCGAGTGGCCGAGCCATTCCAATTTTGGT 951
Query 1027 AGGAAGATTTCGGAAGATAGATCAAGATGCTCTAACAACGGATTTTTTCGGTGTAGCTCA 1086
||| ||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 952 GGGACGATTTTGGATGATAGATCAAGATGCTCTAACAAAGGAATTTTTCGGTGTAGCTCA 1011
Query 1087 CCAGCTATGTCTTGTTCTACTCGTACAAAGACGAAAGATGCAAAA 1131
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1012 CCAGCTATGTCTTCTTCTACTCGTACAAAGACGAAAGATGCAAAA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44603812890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5