BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25805.1
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484344 jgi|Araly1|484344|fgenesh2_kg.5__336__AT3G25805.1 1598 0.0
> Ahg484344 jgi|Araly1|484344|fgenesh2_kg.5__336__AT3G25805.1
Length=1094
Score = 1598 bits (865), Expect = 0.0
Identities = 1024/1099 (93%), Gaps = 17/1099 (2%)
Strand=Plus/Plus
Query 8 CAGTGAAGGGACGACGATGATTCTGATAACCTCACCGACGTTGACATATCTCCGTC-ACC 66
||| |||||||||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 1 CAGCGAAGGGACGACGATGATTCTGATAACCTCACCGACGGTGACATATCTCC-ACAACC 59
Query 67 GTCTCCACAGTTCCCAAATCAAATCGCCACAAATTCGCCGCCATTTTCTTCGGAGTAGAG 126
|||| | || || ||||| ||||||||| ||| || ||||||||||| |||||||||||
Sbjct 60 GTCTTCTCAATTTCCAAACCAAATCGCCGCAATTTTACCGCCATTTTCGTCGGAGTAGAG 119
Query 127 AAATCTCCACAGTCGATCGCTGCTACAATCCATGGCAGTCTACGAATCG----TTTCAAA 182
||||||| || ||||||||||||| ||||||||||||| | || ||| | |||||||
Sbjct 120 AAATCTCGACCGTCGATCGCTGCTGCAATCCATGGCAGACAAC-AATGGATTATTTCAAA 178
Query 183 TTACGAACACGAGACAGTTCCTTCTTATGCTGTGCTCGCCGGAAACCGGAGACGGCGACG 242
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 179 TTACGAACACGAGACAGTTCCTTCTTATGCTCTGCTCGCCGGAAACCGGAGACGGCGACG 238
Query 243 GTAGAGGTTGAAGATGATTCTATAAGGAGAATTGTTCGGTATCTTCTATGGACTAGTGAA 302
|| |||||||| ||||||||| || ||||||| ||||||||||||||||||| | |||||
Sbjct 239 GTTGAGGTTGATGATGATTCTGTACGGAGAATCGTTCGGTATCTTCTATGGAGTGGTGAA 298
Query 303 GCTGTGTATATACTATGGCTCTTTCTTCTCCCTTACGCTCCTGGAGATCCAGTTTGGGCA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCTGTGTATATACTATGGCTCTTTCTTCTCCCTTACGCTCCTGGAGATCCAGTTTGGGCA 358
Query 363 ATTAGTTCAGAGACAGTGAATTCTCTTTTGGGACTTTCTCTGAATTTCTTCTTTGTCTTG 422
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 359 ATTAGTTCAGAGACAGTGAATTCTCTTTTGGGACTTTCTTTGAATTTTTTCTTTGTCTTG 418
Query 423 CCTCTTACAAACGCCGCTGGTATTCACTTCTTACAAGCTCCTGTTCTTCACCCGATGGCT 482
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 419 CCTCTTACAAACGCCGCTGGTATTCAGTTCTTACAAGCTCCTGTTCTTCACCCGATGGCT 478
Query 483 GAAGGGTTATTCAACTTTGTAATAGCTTGGACACTCATGTTTGCTCCATTGCTATACACA 542
||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 479 GAAGGATTATTCAACTTTGTGATAGCTTGGACACTCATGTTTGCTCCGTTGCTATACACG 538
Query 543 GACCGAAAGAGAAATCGATACAAAAGCTCTCTTGACGTCTTATGGAGTCTCATGATGTTC 602
||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 539 GACCGGAAGAGAGATCGATACAAAAGCTCTCTTGACGTCTTATGGGGTCTCATGATGTTC 598
Query 603 CTTACAAACACGTTTCTAATCCCATACATGGCTTTACGGCTCAATGACGCTGACCCAGAT 662
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTCACAAACACGTTTCTAATCCCATACATGGCTTTACGGCTCAATGACGCTGACCCAGAT 658
Query 663 GATAAACCAAGCAAAAGGTCTCAACTTGGTGAAGTGATGACCAAAGGTGCACCAATAGTT 722
|||||||| |||||||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 659 GATAAACCGAGCAAAAGGTCTCAACTTGGCGAAGCAATGACCAAAGGTGCCCCAATAGTT 718
Query 723 GGTCTGACCGGAGCTACGGTGTGTCTGATATCAGCATTGTGGTCTCTCTACGGTCGAGCA 782
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 719 GGTCTGACCGGAGCTACGGTGTGTCTGATATCAATATTGTGGTCTCTCTATGGTCGAGCA 778
Query 783 GATGGTGATTTCGGTGGAATCATGGACAGATGGCAGTATCT-GATTGGTTATTTGGGATC 841
||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 779 GATGGAGATTTTGGTGGAATCATGGACAGATGGCAGTATCTCG-TTGGTTATTTGGGATC 837
Query 842 GGAGAGACTAGCTTACGCGTTTATATGGGATATATGTCTGTACACAATCTTTCAGCCATG 901
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGAGAGACTGGCTTACGCGTTTATATGGGATATATGTCTGTACACAATCTTTCAGCCATG 897
Query 902 GTTGATTGGAGAGAACCTGCAAAATGTGAAGAAGAAC-AAGATTGAATTGGTGAAGTATC 960
||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||
Sbjct 898 GTTGATTGGAGAGAACCTGCAAAATGTGAAGAAGA-CTAAGATTGAATTGGTGAGGTATC 956
Query 961 TAAGGTTTGTTCCTGTTTTTGGTTTACTTGCATATCATTTGTTTCTCAATCTCGAAGATG 1020
| ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||
Sbjct 957 TTAGGTTTGTTCCTGTTTTTGGTTTGCTTGCATATCTTTTGTTTATCAATCTCGAAAATG 1016
Query 1021 AATCAATTTAATTTGTTA---G-TATACACACATATTGTCGTTGTACT-TATAACAAATG 1075
||||| ||||||| |||| | ||||||||||||||||||||||||| | || ||||||
Sbjct 1017 AATCAGTTTAATTAGTTAATTGGTATACACACATATTGTCGTTGTACTCT-TATCAAATG 1075
Query 1076 TAATTATATTATGGAAATT 1094
|||||||||||||||||||
Sbjct 1076 TAATTATATTATGGAAATT 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41325242028
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5