BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25805.1 Length=1109 Score E Sequences producing significant alignments: (Bits) Value Ahg484344 jgi|Araly1|484344|fgenesh2_kg.5__336__AT3G25805.1 1598 0.0 > Ahg484344 jgi|Araly1|484344|fgenesh2_kg.5__336__AT3G25805.1 Length=1094 Score = 1598 bits (865), Expect = 0.0 Identities = 1024/1099 (93%), Gaps = 17/1099 (2%) Strand=Plus/Plus Query 8 CAGTGAAGGGACGACGATGATTCTGATAACCTCACCGACGTTGACATATCTCCGTC-ACC 66 ||| |||||||||||||||||||||||||||||||||||| |||||||||||| | ||| Sbjct 1 CAGCGAAGGGACGACGATGATTCTGATAACCTCACCGACGGTGACATATCTCC-ACAACC 59 Query 67 GTCTCCACAGTTCCCAAATCAAATCGCCACAAATTCGCCGCCATTTTCTTCGGAGTAGAG 126 |||| | || || ||||| ||||||||| ||| || ||||||||||| ||||||||||| Sbjct 60 GTCTTCTCAATTTCCAAACCAAATCGCCGCAATTTTACCGCCATTTTCGTCGGAGTAGAG 119 Query 127 AAATCTCCACAGTCGATCGCTGCTACAATCCATGGCAGTCTACGAATCG----TTTCAAA 182 ||||||| || ||||||||||||| ||||||||||||| | || ||| | ||||||| Sbjct 120 AAATCTCGACCGTCGATCGCTGCTGCAATCCATGGCAGACAAC-AATGGATTATTTCAAA 178 Query 183 TTACGAACACGAGACAGTTCCTTCTTATGCTGTGCTCGCCGGAAACCGGAGACGGCGACG 242 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 179 TTACGAACACGAGACAGTTCCTTCTTATGCTCTGCTCGCCGGAAACCGGAGACGGCGACG 238 Query 243 GTAGAGGTTGAAGATGATTCTATAAGGAGAATTGTTCGGTATCTTCTATGGACTAGTGAA 302 || |||||||| ||||||||| || ||||||| ||||||||||||||||||| | ||||| Sbjct 239 GTTGAGGTTGATGATGATTCTGTACGGAGAATCGTTCGGTATCTTCTATGGAGTGGTGAA 298 Query 303 GCTGTGTATATACTATGGCTCTTTCTTCTCCCTTACGCTCCTGGAGATCCAGTTTGGGCA 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 GCTGTGTATATACTATGGCTCTTTCTTCTCCCTTACGCTCCTGGAGATCCAGTTTGGGCA 358 Query 363 ATTAGTTCAGAGACAGTGAATTCTCTTTTGGGACTTTCTCTGAATTTCTTCTTTGTCTTG 422 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 359 ATTAGTTCAGAGACAGTGAATTCTCTTTTGGGACTTTCTTTGAATTTTTTCTTTGTCTTG 418 Query 423 CCTCTTACAAACGCCGCTGGTATTCACTTCTTACAAGCTCCTGTTCTTCACCCGATGGCT 482 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 419 CCTCTTACAAACGCCGCTGGTATTCAGTTCTTACAAGCTCCTGTTCTTCACCCGATGGCT 478 Query 483 GAAGGGTTATTCAACTTTGTAATAGCTTGGACACTCATGTTTGCTCCATTGCTATACACA 542 ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 479 GAAGGATTATTCAACTTTGTGATAGCTTGGACACTCATGTTTGCTCCGTTGCTATACACG 538 Query 543 GACCGAAAGAGAAATCGATACAAAAGCTCTCTTGACGTCTTATGGAGTCTCATGATGTTC 602 ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 539 GACCGGAAGAGAGATCGATACAAAAGCTCTCTTGACGTCTTATGGGGTCTCATGATGTTC 598 Query 603 CTTACAAACACGTTTCTAATCCCATACATGGCTTTACGGCTCAATGACGCTGACCCAGAT 662 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CTCACAAACACGTTTCTAATCCCATACATGGCTTTACGGCTCAATGACGCTGACCCAGAT 658 Query 663 GATAAACCAAGCAAAAGGTCTCAACTTGGTGAAGTGATGACCAAAGGTGCACCAATAGTT 722 |||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||| Sbjct 659 GATAAACCGAGCAAAAGGTCTCAACTTGGCGAAGCAATGACCAAAGGTGCCCCAATAGTT 718 Query 723 GGTCTGACCGGAGCTACGGTGTGTCTGATATCAGCATTGTGGTCTCTCTACGGTCGAGCA 782 ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 719 GGTCTGACCGGAGCTACGGTGTGTCTGATATCAATATTGTGGTCTCTCTATGGTCGAGCA 778 Query 783 GATGGTGATTTCGGTGGAATCATGGACAGATGGCAGTATCT-GATTGGTTATTTGGGATC 841 ||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 779 GATGGAGATTTTGGTGGAATCATGGACAGATGGCAGTATCTCG-TTGGTTATTTGGGATC 837 Query 842 GGAGAGACTAGCTTACGCGTTTATATGGGATATATGTCTGTACACAATCTTTCAGCCATG 901 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 GGAGAGACTGGCTTACGCGTTTATATGGGATATATGTCTGTACACAATCTTTCAGCCATG 897 Query 902 GTTGATTGGAGAGAACCTGCAAAATGTGAAGAAGAAC-AAGATTGAATTGGTGAAGTATC 960 ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| Sbjct 898 GTTGATTGGAGAGAACCTGCAAAATGTGAAGAAGA-CTAAGATTGAATTGGTGAGGTATC 956 Query 961 TAAGGTTTGTTCCTGTTTTTGGTTTACTTGCATATCATTTGTTTCTCAATCTCGAAGATG 1020 | ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| ||| Sbjct 957 TTAGGTTTGTTCCTGTTTTTGGTTTGCTTGCATATCTTTTGTTTATCAATCTCGAAAATG 1016 Query 1021 AATCAATTTAATTTGTTA---G-TATACACACATATTGTCGTTGTACT-TATAACAAATG 1075 ||||| ||||||| |||| | ||||||||||||||||||||||||| | || |||||| Sbjct 1017 AATCAGTTTAATTAGTTAATTGGTATACACACATATTGTCGTTGTACTCT-TATCAAATG 1075 Query 1076 TAATTATATTATGGAAATT 1094 ||||||||||||||||||| Sbjct 1076 TAATTATATTATGGAAATT 1094 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41325242028 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5