BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25810.1 Length=1835 Score E Sequences producing significant alignments: (Bits) Value Ahg896435 jgi|Araly1|896435|Al_scaffold_0005_401 1965 0.0 Ahg322722 jgi|Araly1|322722|fgenesh1_pm.C_scaffold_5000266 407 2e-112 Ahg936269 jgi|Araly1|936269|scaffold_500460.1 292 5e-78 > Ahg896435 jgi|Araly1|896435|Al_scaffold_0005_401 Length=1782 Score = 1965 bits (1064), Expect = 0.0 Identities = 1568/1809 (87%), Gaps = 43/1809 (2%) Strand=Plus/Plus Query 39 ATGGCTACTTTGT-GTATAGGTTCAGCTCCTATTTACCAAAATGCATGTATCCATAATTT 97 ||||||||||| | ||||||||||||||| ||||||||||||| || | ||| || | Sbjct 1 ATGGCTACTTT-TCGTATAGGTTCAGCTCTTATTTACCAAAAT--AT-CACCCACCATAT 56 Query 98 TCGTCTTCAACGTCCTCGTCGTTTCATATCCAAATCCATGACAAAAACGATGCCGGATGC 157 |||||||| |||||||| |||||| ||| ||| |||||||| ||||||| ||||||| | Sbjct 57 TCGTCTTCGACGTCCTCACCGTTTCGTATGCAAGTCCATGACCAAAACGACGCCGGATTC 116 Query 158 TAATCCT-CTTGACCTCCGTCGACGCTCGGGCAACTATCAACCTTCTTCATGGGACCATA 216 || | || | |||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 117 TACTTCTGC-TGACCTCCGTCGACGCTCCGGCAACTATCAACCTTCACCATGGGACCATT 175 Query 217 GTTATCTCCTCTCCATCGAGAACAAATATGTGAATGAAAAAGAAGTGATAACTAGACATG 276 |||||||||||||||||||||| ||||||| || |||||||||||| ||||||||| ||| Sbjct 176 GTTATCTCCTCTCCATCGAGAATAAATATGCGAGTGAAAAAGAAGTAATAACTAGAGATG 235 Query 277 TGTTGAAGAAAAAGGTGAAGAAGATGCTAGAGGAAGTAGAGACGAAGAGCCGTCTCGAGA 336 ||||||| ||||| |||| || |||||| || || |||| |||||||||||||||| Sbjct 236 TGTTGAAAAAAAAAGTGAGGATGATGCT---TGATGTTGAGAAGAAGAGCCGTCTCGAGC 292 Query 337 AATTAGAGCTCATCGATGATTTACAAAAGCTTGGGGTTTCGTATCATTTTGAGCAAGAAA 396 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | ||| Sbjct 293 AATTAGAGCTCATCGATGATTTGCAAAAACTTGGGGTTTCGTATCATTTTGAGCTACAAA 352 Query 397 TAAATAACATTTTGACAAATTTTCATCTTGAAAATGGAAAAAATATTTGGAAATGTGACA 456 ||||| | | ||||||| |||||||||| ||||||||| |||| | ||||||||||||| Sbjct 353 TAAATGATACTTTGACAGATTTTCATCTAAAAAATGGAAGAAATGTCTGGAAATGTGACA 412 Query 457 AGGAAGAAGATTTACATGCAACCGCACTCGAATTCCGACTTCTTAGACAACATGGTTTTG 516 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 413 AGGAAGAAGATTTACATGCAACCGCACTCGAATTTCGACTTCTTAGACAACATGGTTTTG 472 Query 517 GTGTCTCAGAAGATATATTTGATGTAATCATCGACAAAATCGAAAGTAATACGTTCAAGA 576 |||||||||| ||||||||||||| ||||| ||||| || ||||||||||||||||||| Sbjct 473 ATGTCTCAGAAAATATATTTGATGTGATCATAGACAAGATAGAAAGTAATACGTTCAAGA 532 Query 577 GTGACAATATAACAAG-TATCATCACTCTATACGAAGCATCGTATCTCTCCACGAAATCG 635 | || ||||| ||| |||||| || | |||||||| || | |||||||||||||||| Sbjct 533 GCAACGGTATAA-AAGGTATCATTTCTTTGTACGAAGCGTCATTTCTCTCCACGAAATCG 591 Query 636 GATACTAAATTGCATAAAGTCATCAGGCCTTTTGCAACAGAACAAATAAGAAA-TTTCGT 694 |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||| || Sbjct 592 GATACTAAATTGCACAAAGTCATCAGACCTTTTGCAACAGAGCAAATAAGAAAATTT-GT 650 Query 695 TGATGATGAAAGTGAAACTTACAACATT-ATGTTACGTGAGATGGCGATCCATGCGTTAG 753 ||||||||||| | || | | | |||| | | ||| || | |||||| |||||||||| Sbjct 651 TGATGATGAAACT-AA-C--A-A-CATTGAGGA-ACGCGAAAAGGCGATTCATGCGTTAG 703 Query 754 AAATACCGTACCATTGGAGAATGAGAAGGCTAGAGACGAGATGGTATATAGATGCATACG 813 |||| ||||||||||||||||||||||||||||||| |||||||| |||||| ||||| Sbjct 704 AAATGCCGTACCATTGGAGAATGAGAAGGCTAGAGATGAGATGGTGCATAGATTCATACA 763 Query 814 AGAAGAAACATGACATGAATCtttttttGGCCGAATTCGCCAAAATCGATTTCAATATCG 873 |||||||||| |||||||||||| | ||| ||| ||||||||||| ||||||||||||| Sbjct 764 AGAAGAAACAAGACATGAATCTTGTCTTGATCGAGTTCGCCAAAATTGATTTCAATATCG 823 Query 874 TACAAACTGCTCATCAAGAAGATGTCAAATACGTTTCCTGTTGGTGGAAGGAAACAGGTT 933 ||||| ||||||||||||||||| ||||||||||||| | ||||||||||| ||| ||| Sbjct 824 TACAAGCTGCTCATCAAGAAGATCTCAAATACGTTTCAAGCTGGTGGAAGGATACAAGTT 883 Query 934 TGGGTAGTCAACTTCACTTTGTAAGAGACAGAATTGTTGAGAATTATTTTTGGACCGTTG 993 ||| || ||||||| |||||||||||| ||||| || ||||| |||||||||||||||| Sbjct 884 TGGCTAACCAACTTCCCTTTGTAAGAGATAGAATAGTCGAGAACTATTTTTGGACCGTTG 943 Query 994 GAATGATATATGAACCACAATTTGGATATATCCGACGGATCGTGGCTATAGTTGCTGCAC 1053 || | ||||| |||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 944 GATTAATATACGAACCACAATTTGGATATATCCGACGGATCATGACTATAGTTAATGCAC 1003 Query 1054 TTATTACAGTTATTGATGACATCTACGATATTTATGGTACTCCTGAAGAACTTGAGCTCT 1113 || ||||| ||||| |||||||||||||| ||||| ||| ||||||||| || |||| Sbjct 1004 TTGTTACAACCATTGACGACATCTACGATATCTATGGCACTATTGAAGAACTAGAACTCT 1063 Query 1114 TCACTGCTATGGTTCAAAATTGGGATATAAATCGTCTTGATGAGCTCCCCGAATACATGA 1173 ||||| | |||||| ||||||||||| |||||||||| | |||||| ||||| || |||| Sbjct 1064 TCACTTCCATGGTTGAAAATTGGGATGTAAATCGTCTGGGTGAGCTTCCCGAGTATATGA 1123 Query 1174 AGTTGTGTTTTCTTACATTGTTTAATGAAATCAATGCCAT-GGGATGTGATGTTCTCAAA 1232 |||||||||||| | || | ||||||||||||| ||| ||| ||| |||| |||||| Sbjct 1124 GGTTGTGTTTTCTGATTTTATACAATGAAATCAATGGCATTGGG-TGTCATGTCCTCAAA 1182 Query 1233 TGTAAAAATATTGACGTCATTCCTTATT-TCAAAAAATCGTGGGCAGATTTATGTA-AAG 1290 |||||||| ||||||||||| |||| | |||| |||||||||||||||||||||| || Sbjct 1183 TGTAAAAAGATTGACGTCATCCCTT-TCCTCAAGAAATCGTGGGCAGATTTATGTAGAA- 1240 Query 1291 CATATCTAGTTGAAGCAAAGTGGTACAAAGGAGGATACAAACCAAGCGTGGAAGAATACA 1350 |||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1241 CATATCTAGTGGAAGCAAAGTGGTACAAAAGAGGATACAAACCAAGCTTGGAAGAATACA 1300 Query 1351 TGCAAAATGCTTGGATTTCAATTTCTGCTCCAACAATGTTAATCCACTTTTACTGTGCTT 1410 ||||||||||||||||||||||||||||||||||| | || |||||||||||||| | || Sbjct 1301 TGCAAAATGCTTGGATTTCAATTTCTGCTCCAACAGTATTGATCCACTTTTACTGCGTTT 1360 Query 1411 TCTCTGGCCAAATCTCGGTTCAAATTTTGGAGT-CTTTGGTCC-AACAACAACAAGACG- 1467 |||||| |||||||||| |||||| ||||| | | ||| ||| |||| | |||| | | Sbjct 1361 TCTCTGACCAAATCTCGATTCAAAGCTTGGA-TACCTTG-TCCCAACACCGACAAAA-GA 1417 Query 1468 TCGTCCGATGCTCTGCCACTGTGCTCCGTCTAGCTAATGACCTTGCAACTTCGCCGGATG 1527 | ||||||||||| |||||||| || ||||||||||| ||||||| |||||||||||||| Sbjct 1418 TTGTCCGATGCTCCGCCACTGTCCTTCGTCTAGCTAACGACCTTGGAACTTCGCCGGATG 1477 Query 1528 AATTGGCGAGAGGAGACGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGTTT 1587 |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| || Sbjct 1478 AATTGGCGAGAGGAGACGTTGTAAAATCGGTCCAATGTTACATGCATGAGACCGGAGCTT 1537 Query 1588 CGGAGGAAGAGGCACGC-ACACATGTGCAGCAGATGATAAGTCACACGTGGGACGAGATG 1646 | |||||| ||||||| | ||||||||||||||||| ||| ||||||||||||| ||| Sbjct 1538 CAGAGGAAAAGGCACGTGAG-CATGTGCAGCAGATGATTAGTGACACGTGGGACGACATG 1596 Query 1647 AACTAT-GAAGCAAGAACAGCGGCACGCAGTTCTTCGTTACTTTCTCGACGTTTTGTTGA 1705 |||| | ||| ||| || | ||||| ||| ||||||||| |||||| || ||||||| || Sbjct 1597 AACT-TCGAAACAA-AA-A-CGGCATGCAATTCTTCGTTGCTTTCTAGAGGTTTTGTGGA 1652 Query 1706 AACTGCAATGAACCTGGCACGTATGTCGCAGTGCATGTACCAACATGGCGATGGTCATGG 1765 | ||||||||||| | ||||| |||||||| |||||||| ||| |||||||||||||||| Sbjct 1653 AGCTGCAATGAACTTAGCACGAATGTCGCAATGCATGTATCAATATGGCGATGGTCATGG 1712 Query 1766 ATGTCCCGACAAAGCCAAGA-TCGTTGATCGTGTCCAAACCTTGCTCGTTGACCCAATCC 1824 || ||||||||||||||||| | |||| |||||||| | |||| |||||||| |||||| Sbjct 1713 ATTTCCCGACAAAGCCAAGACT-GTTGGTCGTGTCCGATCCTTACTCGTTGATTCAATCC 1771 Query 1825 CATTAGATT 1833 ||||||||| Sbjct 1772 CATTAGATT 1780 > Ahg322722 jgi|Araly1|322722|fgenesh1_pm.C_scaffold_5000266 Length=270 Score = 407 bits (220), Expect = 2e-112 Identities = 248/262 (95%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 1569 ATGCATGAGACCGGAGTTTCGGAGGAAGAGGCACGCACACATGTGCAGCAGATGATAAGT 1628 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGCATGAGACCGGAGTTTCGGAGGAAGAGGCACGCGCACATGTGCAGCAGATGATAAGT 60 Query 1629 CACACGTGGGACGAGATGAACTATGAAGCAAGAACAGCGGCACGCAGTTCTTCGTTACTT 1688 | ||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||||| Sbjct 61 CTCACTTGGGACGAGATGAACTATGAAGCACGAACGGCGGCACGCAGTTCTTCCTTACTT 120 Query 1689 TCTCGACGTTTTGTTGAAACTGCAATGAACCTGGCACGTATGTCGCAGTGCATGTACCAA 1748 |||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||| ||| Sbjct 121 TCTCGACGTTTTGTGGAAACTGCAATGAACTTGGCACGCATGTCGCAATGCATGTATCAA 180 Query 1749 CATGGCGATGGTCATGGATGTCCCGACAAAGCCAAGATCGTTGATCGTGTCCAAACCTTG 1808 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 181 CATGGCGATGGTCATGGCTGTCCTGACAAAGCCAAGATCGTTGATCGTGTCCAAACCTTG 240 Query 1809 CTCGTTGACCCAATCCCATTAG 1830 |||||||| ||||||||||||| Sbjct 241 CTCGTTGATCCAATCCCATTAG 262 > Ahg936269 jgi|Araly1|936269|scaffold_500460.1 Length=410 Score = 292 bits (158), Expect = 5e-78 Identities = 280/336 (83%), Gaps = 19/336 (6%) Strand=Plus/Plus Query 1302 GAAGCAAAGTGGTACAAAGGAGGATACAAACCAAGCGTGGAAGAATACATGCAAAATGCT 1361 |||| || |||||||||| |||||||||| |||| | | ||||||||||||||||||||| Sbjct 82 GAAGTAAGGTGGTACAAAAGAGGATACAAGCCAAAC-TTGAAGAATACATGCAAAATGCT 140 Query 1362 TGGATTTCAATTTCTGCTCCAACAATGTTAATCCACTTTTACTGTGCTTTCTCTGGCCAA 1421 ||||||||||||||||| || ||||||||||| ||| || ||||||||||||||| | || Sbjct 141 TGGATTTCAATTTCTGCCCCGACAATGTTAATTCACATTCACTGTGCTTTCTCTGACGAA 200 Query 1422 ATCTCGGTTCAAATTTTGGAG-TCTTTGGTCC-AACAAC---AACAAG-ACGTC--GTCC 1473 ||||| ||||| | |||| | || || ||| |||| | |||||| | ||| |||| Sbjct 201 ATCTCAATTCAAGTCTTGGGGGTCATTA-TCCCAACACCGGCAACAAGTA-GTCCTGTCC 258 Query 1474 GATGCTCTGCCACTGTGCTCCGTCTAGCTAATGACCTTGCAACTTCGCCGGATGAATTGG 1533 ||||||||||||| | |||| ||||| | ||||| ||||||| |||||||||||| Sbjct 259 GATGCTCTGCCACCATCCTCCATCTAG--A----CCTTGGAACTTCGACGGATGAATTGG 312 Query 1534 CGAGAGGAGACGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGTTTCGGAGG 1593 |||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 313 CGAGAGGAGATGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGCATCCCAGG 372 Query 1594 AAGAGGCACGC-ACACATGTGCAGCAGATGATAAGT 1628 |||||||||| | | |||||||||||||| ||| Sbjct 373 AAGAGGCACGTGAGT-AGGTGCAGCAGATGATCAGT 407 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68905253205 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5