BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25810.1
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896435 jgi|Araly1|896435|Al_scaffold_0005_401 1965 0.0
Ahg322722 jgi|Araly1|322722|fgenesh1_pm.C_scaffold_5000266 407 2e-112
Ahg936269 jgi|Araly1|936269|scaffold_500460.1 292 5e-78
> Ahg896435 jgi|Araly1|896435|Al_scaffold_0005_401
Length=1782
Score = 1965 bits (1064), Expect = 0.0
Identities = 1568/1809 (87%), Gaps = 43/1809 (2%)
Strand=Plus/Plus
Query 39 ATGGCTACTTTGT-GTATAGGTTCAGCTCCTATTTACCAAAATGCATGTATCCATAATTT 97
||||||||||| | ||||||||||||||| ||||||||||||| || | ||| || |
Sbjct 1 ATGGCTACTTT-TCGTATAGGTTCAGCTCTTATTTACCAAAAT--AT-CACCCACCATAT 56
Query 98 TCGTCTTCAACGTCCTCGTCGTTTCATATCCAAATCCATGACAAAAACGATGCCGGATGC 157
|||||||| |||||||| |||||| ||| ||| |||||||| ||||||| ||||||| |
Sbjct 57 TCGTCTTCGACGTCCTCACCGTTTCGTATGCAAGTCCATGACCAAAACGACGCCGGATTC 116
Query 158 TAATCCT-CTTGACCTCCGTCGACGCTCGGGCAACTATCAACCTTCTTCATGGGACCATA 216
|| | || | |||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 117 TACTTCTGC-TGACCTCCGTCGACGCTCCGGCAACTATCAACCTTCACCATGGGACCATT 175
Query 217 GTTATCTCCTCTCCATCGAGAACAAATATGTGAATGAAAAAGAAGTGATAACTAGACATG 276
|||||||||||||||||||||| ||||||| || |||||||||||| ||||||||| |||
Sbjct 176 GTTATCTCCTCTCCATCGAGAATAAATATGCGAGTGAAAAAGAAGTAATAACTAGAGATG 235
Query 277 TGTTGAAGAAAAAGGTGAAGAAGATGCTAGAGGAAGTAGAGACGAAGAGCCGTCTCGAGA 336
||||||| ||||| |||| || |||||| || || |||| ||||||||||||||||
Sbjct 236 TGTTGAAAAAAAAAGTGAGGATGATGCT---TGATGTTGAGAAGAAGAGCCGTCTCGAGC 292
Query 337 AATTAGAGCTCATCGATGATTTACAAAAGCTTGGGGTTTCGTATCATTTTGAGCAAGAAA 396
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |||
Sbjct 293 AATTAGAGCTCATCGATGATTTGCAAAAACTTGGGGTTTCGTATCATTTTGAGCTACAAA 352
Query 397 TAAATAACATTTTGACAAATTTTCATCTTGAAAATGGAAAAAATATTTGGAAATGTGACA 456
||||| | | ||||||| |||||||||| ||||||||| |||| | |||||||||||||
Sbjct 353 TAAATGATACTTTGACAGATTTTCATCTAAAAAATGGAAGAAATGTCTGGAAATGTGACA 412
Query 457 AGGAAGAAGATTTACATGCAACCGCACTCGAATTCCGACTTCTTAGACAACATGGTTTTG 516
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 413 AGGAAGAAGATTTACATGCAACCGCACTCGAATTTCGACTTCTTAGACAACATGGTTTTG 472
Query 517 GTGTCTCAGAAGATATATTTGATGTAATCATCGACAAAATCGAAAGTAATACGTTCAAGA 576
|||||||||| ||||||||||||| ||||| ||||| || |||||||||||||||||||
Sbjct 473 ATGTCTCAGAAAATATATTTGATGTGATCATAGACAAGATAGAAAGTAATACGTTCAAGA 532
Query 577 GTGACAATATAACAAG-TATCATCACTCTATACGAAGCATCGTATCTCTCCACGAAATCG 635
| || ||||| ||| |||||| || | |||||||| || | ||||||||||||||||
Sbjct 533 GCAACGGTATAA-AAGGTATCATTTCTTTGTACGAAGCGTCATTTCTCTCCACGAAATCG 591
Query 636 GATACTAAATTGCATAAAGTCATCAGGCCTTTTGCAACAGAACAAATAAGAAA-TTTCGT 694
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||| ||
Sbjct 592 GATACTAAATTGCACAAAGTCATCAGACCTTTTGCAACAGAGCAAATAAGAAAATTT-GT 650
Query 695 TGATGATGAAAGTGAAACTTACAACATT-ATGTTACGTGAGATGGCGATCCATGCGTTAG 753
||||||||||| | || | | | |||| | | ||| || | |||||| ||||||||||
Sbjct 651 TGATGATGAAACT-AA-C--A-A-CATTGAGGA-ACGCGAAAAGGCGATTCATGCGTTAG 703
Query 754 AAATACCGTACCATTGGAGAATGAGAAGGCTAGAGACGAGATGGTATATAGATGCATACG 813
|||| ||||||||||||||||||||||||||||||| |||||||| |||||| |||||
Sbjct 704 AAATGCCGTACCATTGGAGAATGAGAAGGCTAGAGATGAGATGGTGCATAGATTCATACA 763
Query 814 AGAAGAAACATGACATGAATCtttttttGGCCGAATTCGCCAAAATCGATTTCAATATCG 873
|||||||||| |||||||||||| | ||| ||| ||||||||||| |||||||||||||
Sbjct 764 AGAAGAAACAAGACATGAATCTTGTCTTGATCGAGTTCGCCAAAATTGATTTCAATATCG 823
Query 874 TACAAACTGCTCATCAAGAAGATGTCAAATACGTTTCCTGTTGGTGGAAGGAAACAGGTT 933
||||| ||||||||||||||||| ||||||||||||| | ||||||||||| ||| |||
Sbjct 824 TACAAGCTGCTCATCAAGAAGATCTCAAATACGTTTCAAGCTGGTGGAAGGATACAAGTT 883
Query 934 TGGGTAGTCAACTTCACTTTGTAAGAGACAGAATTGTTGAGAATTATTTTTGGACCGTTG 993
||| || ||||||| |||||||||||| ||||| || ||||| ||||||||||||||||
Sbjct 884 TGGCTAACCAACTTCCCTTTGTAAGAGATAGAATAGTCGAGAACTATTTTTGGACCGTTG 943
Query 994 GAATGATATATGAACCACAATTTGGATATATCCGACGGATCGTGGCTATAGTTGCTGCAC 1053
|| | ||||| |||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 944 GATTAATATACGAACCACAATTTGGATATATCCGACGGATCATGACTATAGTTAATGCAC 1003
Query 1054 TTATTACAGTTATTGATGACATCTACGATATTTATGGTACTCCTGAAGAACTTGAGCTCT 1113
|| ||||| ||||| |||||||||||||| ||||| ||| ||||||||| || ||||
Sbjct 1004 TTGTTACAACCATTGACGACATCTACGATATCTATGGCACTATTGAAGAACTAGAACTCT 1063
Query 1114 TCACTGCTATGGTTCAAAATTGGGATATAAATCGTCTTGATGAGCTCCCCGAATACATGA 1173
||||| | |||||| ||||||||||| |||||||||| | |||||| ||||| || ||||
Sbjct 1064 TCACTTCCATGGTTGAAAATTGGGATGTAAATCGTCTGGGTGAGCTTCCCGAGTATATGA 1123
Query 1174 AGTTGTGTTTTCTTACATTGTTTAATGAAATCAATGCCAT-GGGATGTGATGTTCTCAAA 1232
|||||||||||| | || | ||||||||||||| ||| ||| ||| |||| ||||||
Sbjct 1124 GGTTGTGTTTTCTGATTTTATACAATGAAATCAATGGCATTGGG-TGTCATGTCCTCAAA 1182
Query 1233 TGTAAAAATATTGACGTCATTCCTTATT-TCAAAAAATCGTGGGCAGATTTATGTA-AAG 1290
|||||||| ||||||||||| |||| | |||| |||||||||||||||||||||| ||
Sbjct 1183 TGTAAAAAGATTGACGTCATCCCTT-TCCTCAAGAAATCGTGGGCAGATTTATGTAGAA- 1240
Query 1291 CATATCTAGTTGAAGCAAAGTGGTACAAAGGAGGATACAAACCAAGCGTGGAAGAATACA 1350
|||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1241 CATATCTAGTGGAAGCAAAGTGGTACAAAAGAGGATACAAACCAAGCTTGGAAGAATACA 1300
Query 1351 TGCAAAATGCTTGGATTTCAATTTCTGCTCCAACAATGTTAATCCACTTTTACTGTGCTT 1410
||||||||||||||||||||||||||||||||||| | || |||||||||||||| | ||
Sbjct 1301 TGCAAAATGCTTGGATTTCAATTTCTGCTCCAACAGTATTGATCCACTTTTACTGCGTTT 1360
Query 1411 TCTCTGGCCAAATCTCGGTTCAAATTTTGGAGT-CTTTGGTCC-AACAACAACAAGACG- 1467
|||||| |||||||||| |||||| ||||| | | ||| ||| |||| | |||| | |
Sbjct 1361 TCTCTGACCAAATCTCGATTCAAAGCTTGGA-TACCTTG-TCCCAACACCGACAAAA-GA 1417
Query 1468 TCGTCCGATGCTCTGCCACTGTGCTCCGTCTAGCTAATGACCTTGCAACTTCGCCGGATG 1527
| ||||||||||| |||||||| || ||||||||||| ||||||| ||||||||||||||
Sbjct 1418 TTGTCCGATGCTCCGCCACTGTCCTTCGTCTAGCTAACGACCTTGGAACTTCGCCGGATG 1477
Query 1528 AATTGGCGAGAGGAGACGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGTTT 1587
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 1478 AATTGGCGAGAGGAGACGTTGTAAAATCGGTCCAATGTTACATGCATGAGACCGGAGCTT 1537
Query 1588 CGGAGGAAGAGGCACGC-ACACATGTGCAGCAGATGATAAGTCACACGTGGGACGAGATG 1646
| |||||| ||||||| | ||||||||||||||||| ||| ||||||||||||| |||
Sbjct 1538 CAGAGGAAAAGGCACGTGAG-CATGTGCAGCAGATGATTAGTGACACGTGGGACGACATG 1596
Query 1647 AACTAT-GAAGCAAGAACAGCGGCACGCAGTTCTTCGTTACTTTCTCGACGTTTTGTTGA 1705
|||| | ||| ||| || | ||||| ||| ||||||||| |||||| || ||||||| ||
Sbjct 1597 AACT-TCGAAACAA-AA-A-CGGCATGCAATTCTTCGTTGCTTTCTAGAGGTTTTGTGGA 1652
Query 1706 AACTGCAATGAACCTGGCACGTATGTCGCAGTGCATGTACCAACATGGCGATGGTCATGG 1765
| ||||||||||| | ||||| |||||||| |||||||| ||| ||||||||||||||||
Sbjct 1653 AGCTGCAATGAACTTAGCACGAATGTCGCAATGCATGTATCAATATGGCGATGGTCATGG 1712
Query 1766 ATGTCCCGACAAAGCCAAGA-TCGTTGATCGTGTCCAAACCTTGCTCGTTGACCCAATCC 1824
|| ||||||||||||||||| | |||| |||||||| | |||| |||||||| ||||||
Sbjct 1713 ATTTCCCGACAAAGCCAAGACT-GTTGGTCGTGTCCGATCCTTACTCGTTGATTCAATCC 1771
Query 1825 CATTAGATT 1833
|||||||||
Sbjct 1772 CATTAGATT 1780
> Ahg322722 jgi|Araly1|322722|fgenesh1_pm.C_scaffold_5000266
Length=270
Score = 407 bits (220), Expect = 2e-112
Identities = 248/262 (95%), Gaps = 0/262 (0%)
Strand=Plus/Plus
Query 1569 ATGCATGAGACCGGAGTTTCGGAGGAAGAGGCACGCACACATGTGCAGCAGATGATAAGT 1628
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGCATGAGACCGGAGTTTCGGAGGAAGAGGCACGCGCACATGTGCAGCAGATGATAAGT 60
Query 1629 CACACGTGGGACGAGATGAACTATGAAGCAAGAACAGCGGCACGCAGTTCTTCGTTACTT 1688
| ||| |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||
Sbjct 61 CTCACTTGGGACGAGATGAACTATGAAGCACGAACGGCGGCACGCAGTTCTTCCTTACTT 120
Query 1689 TCTCGACGTTTTGTTGAAACTGCAATGAACCTGGCACGTATGTCGCAGTGCATGTACCAA 1748
|||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||| |||
Sbjct 121 TCTCGACGTTTTGTGGAAACTGCAATGAACTTGGCACGCATGTCGCAATGCATGTATCAA 180
Query 1749 CATGGCGATGGTCATGGATGTCCCGACAAAGCCAAGATCGTTGATCGTGTCCAAACCTTG 1808
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CATGGCGATGGTCATGGCTGTCCTGACAAAGCCAAGATCGTTGATCGTGTCCAAACCTTG 240
Query 1809 CTCGTTGACCCAATCCCATTAG 1830
|||||||| |||||||||||||
Sbjct 241 CTCGTTGATCCAATCCCATTAG 262
> Ahg936269 jgi|Araly1|936269|scaffold_500460.1
Length=410
Score = 292 bits (158), Expect = 5e-78
Identities = 280/336 (83%), Gaps = 19/336 (6%)
Strand=Plus/Plus
Query 1302 GAAGCAAAGTGGTACAAAGGAGGATACAAACCAAGCGTGGAAGAATACATGCAAAATGCT 1361
|||| || |||||||||| |||||||||| |||| | | |||||||||||||||||||||
Sbjct 82 GAAGTAAGGTGGTACAAAAGAGGATACAAGCCAAAC-TTGAAGAATACATGCAAAATGCT 140
Query 1362 TGGATTTCAATTTCTGCTCCAACAATGTTAATCCACTTTTACTGTGCTTTCTCTGGCCAA 1421
||||||||||||||||| || ||||||||||| ||| || ||||||||||||||| | ||
Sbjct 141 TGGATTTCAATTTCTGCCCCGACAATGTTAATTCACATTCACTGTGCTTTCTCTGACGAA 200
Query 1422 ATCTCGGTTCAAATTTTGGAG-TCTTTGGTCC-AACAAC---AACAAG-ACGTC--GTCC 1473
||||| ||||| | |||| | || || ||| |||| | |||||| | ||| ||||
Sbjct 201 ATCTCAATTCAAGTCTTGGGGGTCATTA-TCCCAACACCGGCAACAAGTA-GTCCTGTCC 258
Query 1474 GATGCTCTGCCACTGTGCTCCGTCTAGCTAATGACCTTGCAACTTCGCCGGATGAATTGG 1533
||||||||||||| | |||| ||||| | ||||| ||||||| ||||||||||||
Sbjct 259 GATGCTCTGCCACCATCCTCCATCTAG--A----CCTTGGAACTTCGACGGATGAATTGG 312
Query 1534 CGAGAGGAGACGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGTTTCGGAGG 1593
|||||||||| |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 313 CGAGAGGAGATGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGCATCCCAGG 372
Query 1594 AAGAGGCACGC-ACACATGTGCAGCAGATGATAAGT 1628
|||||||||| | | |||||||||||||| |||
Sbjct 373 AAGAGGCACGTGAGT-AGGTGCAGCAGATGATCAGT 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68905253205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5