BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25830.1
Length=1944
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896435 jgi|Araly1|896435|Al_scaffold_0005_401 2582 0.0
Ahg899756 jgi|Araly1|899756|Al_scaffold_0004_406 870 0.0
Ahg932440 jgi|Araly1|932440|scaffold_400428.1 780 0.0
Ahg936269 jgi|Araly1|936269|scaffold_500460.1 279 4e-74
Ahg322722 jgi|Araly1|322722|fgenesh1_pm.C_scaffold_5000266 226 5e-58
Ahg936263 jgi|Araly1|936263|scaffold_500454.1 180 4e-44
> Ahg896435 jgi|Araly1|896435|Al_scaffold_0005_401
Length=1782
Score = 2582 bits (1398), Expect = 0.0
Identities = 1667/1795 (93%), Gaps = 26/1795 (1%)
Strand=Plus/Plus
Query 38 ATGGCAACTTTACGTATAAGTTCAGCTCTTATTTACCAAAATACCCTCACCCACCATTTT 97
||||| ||||| |||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct 1 ATGGCTACTTTTCGTATAGGTTCAGCTCTTATTTACCAAAATA---TCACCCACCATATT 57
Query 98 CGTCTTCGACGTCCTCACCGTTTCGTATGCAAGTCCATGACCAAAACGACGCCGGATACT 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 58 CGTCTTCGACGTCCTCACCGTTTCGTATGCAAGTCCATGACCAAAACGACGCCGGATTCT 117
Query 158 AC-TCTTGTTGAACTCAGTCGACGCTCCGGAAACTATCAACCTTCACCGTGGAACCATTG 216
|| || || ||| ||| ||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 118 ACTTC-TGCTGACCTCCGTCGACGCTCCGGCAACTATCAACCTTCACCATGGGACCATTG 176
Query 217 TTATCTCCTCTCCATCGAGAATAAATATGCGAGTGAAACAGAAGTAATAACTAGAGATGT 276
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 177 TTATCTCCTCTCCATCGAGAATAAATATGCGAGTGAAAAAGAAGTAATAACTAGAGATGT 236
Query 277 GTTGAAGAAAAAAGTGAAGA-GCATGCTTGATGATGAGAAGAAGAGCCGTCTCGAGCAAT 335
|||||| |||||||||| || | |||||||||| ||||||||||||||||||||||||||
Sbjct 237 GTTGAAAAAAAAAGTGAGGATG-ATGCTTGATGTTGAGAAGAAGAGCCGTCTCGAGCAAT 295
Query 336 TAGAGCTCATCGATGATCTGCAAAAACTTGGGGTTTCGTATCATTTTGAGATAGAAATAA 395
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 296 TAGAGCTCATCGATGATTTGCAAAAACTTGGGGTTTCGTATCATTTTGAGCTACAAATAA 355
Query 396 ATGATACTTTGACAGATCTTCATCT-TAAAATGGGAAGAAATTG-CTGGAAATGTGACAA 453
||||||||||||||||| ||||||| ||||| |||||||| || |||||||||||||||
Sbjct 356 ATGATACTTTGACAGATTTTCATCTAAAAAAT-GGAAGAAA-TGTCTGGAAATGTGACAA 413
Query 454 GGAAGAAGATTTACATGCAACCTCACTCGAATTCCGACTTCTTAGACAACATGGTTTTGA 513
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 414 GGAAGAAGATTTACATGCAACCGCACTCGAATTTCGACTTCTTAGACAACATGGTTTTGA 473
Query 514 TGTCTCAGAAAATATATTTGATGTGATCATCGACCAA-ATAGAAAGTAATACGTTCAAGA 572
|||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 474 TGTCTCAGAAAATATATTTGATGTGATCATAGA-CAAGATAGAAAGTAATACGTTCAAGA 532
Query 573 CCAACAATATAAACGGTATCATTTCTTTGTACGAAGCGTCGTATCTTTCCACGAAATCGG 632
|||| |||||| |||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 533 GCAACGGTATAAAAGGTATCATTTCTTTGTACGAAGCGTCATTTCTCTCCACGAAATCGG 592
Query 633 ATACTAAATTGCATAAAGTCATCAGACCTTTTGCAACAGAACAAATAAGAAAATTTGTTG 692
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 593 ATACTAAATTGCACAAAGTCATCAGACCTTTTGCAACAGAGCAAATAAGAAAATTTGTTG 652
Query 693 ATGATGAAGATACTAAAAACATTGAGGTACGAGAGAAGGCGTA-TCATGCCTTAGAAATG 751
|||||| | | ||||| |||||||||| ||| || |||||| | |||||| |||||||||
Sbjct 653 ATGATG-A-A-ACTAACAACATTGAGGAACGCGAAAAGGCG-ATTCATGCGTTAGAAATG 708
Query 752 CCGTACCATTGGAGAATGAGAAGGCTAGACACGAGATGGTACATAGATGCATATGAGAAG 811
||||||||||||||||||||||||||||| | |||||||| ||||||| |||| |||||
Sbjct 709 CCGTACCATTGGAGAATGAGAAGGCTAGAGATGAGATGGTGCATAGATTCATACAAGAAG 768
Query 812 AAACATGACATGAATCTTGTCTTGATCGAGTTTGCAAAAATTGATTTCAATATCGTACAA 871
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 769 AAACAAGACATGAATCTTGTCTTGATCGAGTTCGCCAAAATTGATTTCAATATCGTACAA 828
Query 872 GCTGCTCATCAAGAAGATCTCAAATACGTTTCAAGATGGTGGAAGGATACATGTTTGACT 931
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 829 GCTGCTCATCAAGAAGATCTCAAATACGTTTCAAGCTGGTGGAAGGATACAAGTTTGGCT 888
Query 932 AACCAACTTCCCTTTGTAAGAGATAGAATAGTCGAGAACTATTTTTGGACCGTTGGATTA 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AACCAACTTCCCTTTGTAAGAGATAGAATAGTCGAGAACTATTTTTGGACCGTTGGATTA 948
Query 992 ATATACGAACCACAATTTGGATATATCCGACGGATCATGACTATAGTTAATGCCCTTGTT 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 949 ATATACGAACCACAATTTGGATATATCCGACGGATCATGACTATAGTTAATGCACTTGTT 1008
Query 1052 ACAACCATTGACGACATCTACGATATCTATGGCACTCTTGAAGAACTAGAACTATTCACT 1111
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1009 ACAACCATTGACGACATCTACGATATCTATGGCACTATTGAAGAACTAGAACTCTTCACT 1068
Query 1112 TCCATGGTTGAAAATTGGGATGTAAATCGTCTTGGTGAGCTTCCCGAGTATATGAGGTTG 1171
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1069 TCCATGGTTGAAAATTGGGATGTAAATCGTCTGGGTGAGCTTCCCGAGTATATGAGGTTG 1128
Query 1172 TGTTTTCTTATTTTATACAATGAAATCAATGGCATTGGATGTGATATACTCAAATATAAA 1231
|||||||| ||||||||||||||||||||||||||||| ||| || | ||||||| ||||
Sbjct 1129 TGTTTTCTGATTTTATACAATGAAATCAATGGCATTGGGTGTCATGTCCTCAAATGTAAA 1188
Query 1232 AAGATTGACGTCATTCCTTACCTCAAGAAATCGTGGGCAGATTTATGTAGAACATATCTA 1291
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 AAGATTGACGTCATCCCTTTCCTCAAGAAATCGTGGGCAGATTTATGTAGAACATATCTA 1248
Query 1292 GTGGAAGCAAAGTGGTACAAAAGAGGATACAAACCAAGCTTGGAAGAATATATGCAAAAT 1351
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1249 GTGGAAGCAAAGTGGTACAAAAGAGGATACAAACCAAGCTTGGAAGAATACATGCAAAAT 1308
Query 1352 GCTTGGATTTCAATTTCTGCCCCAACAATATTGATCCACTTTTACTGCGTTTTCTCTGAC 1411
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1309 GCTTGGATTTCAATTTCTGCTCCAACAGTATTGATCCACTTTTACTGCGTTTTCTCTGAC 1368
Query 1412 CAAATCTC-AGTTCAAAACTTAGAGACTTTGTCTCAACACCGACAACACATCGTCCGATG 1470
|||||||| | |||||| ||| || || ||||| |||||||||||| | || ||||||||
Sbjct 1369 CAAATCTCGA-TTCAAAGCTTGGATACCTTGTCCCAACACCGACAAAAGATTGTCCGATG 1427
Query 1471 CTCAGCCACCGTTCTTCGTTTAGCTAACGACCTTGGAACTTCGCCA-ACTGAATTGGCGA 1529
||| ||||| || |||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 1428 CTCCGCCACTGTCCTTCGTCTAGCTAACGACCTTGGAACTTCGCCGGA-TGAATTGGCGA 1486
Query 1530 GAGGAGACGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGCTTCAGAGGAAA 1589
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 GAGGAGACGTTGTAAAATCGGTCCAATGTTACATGCATGAGACCGGAGCTTCAGAGGAAA 1546
Query 1590 GGGCACGTGATCACGTGCATCAGATGATTAGCGACATGTGGGACGACATGAACTCCGAAA 1649
||||||||| || ||||| ||||||||||| |||| ||||||||||||||||| |||||
Sbjct 1547 AGGCACGTGAGCATGTGCAGCAGATGATTAGTGACACGTGGGACGACATGAACTTCGAAA 1606
Query 1650 CAAAAACGGCATGCAATTCTTCGTCACGTTCTAGAGGTTTTAAGGAAGCTGCAATGAATC 1709
|||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |
Sbjct 1607 CAAAAACGGCATGCAATTCTTCGTTGCTTTCTAGAGGTTTTGTGGAAGCTGCAATGAA-C 1665
Query 1710 TG-GCACGCATGTCGCAATGCATGTATCAATATGGTGATGGTCATGGATG-CCCTGAAAA 1767
| ||||| |||||||||||||||||||||||||| ||||||||||||| ||| || ||
Sbjct 1666 TTAGCACGAATGTCGCAATGCATGTATCAATATGGCGATGGTCATGGATTTCCC-GACAA 1724
Query 1768 AGCCAAGACCATTGATCGTGTCCAATCCTTACTCGTTGATCCAATTCCATTAGAT 1822
||||||||| ||| |||||||| |||||||||||||||| |||| |||||||||
Sbjct 1725 AGCCAAGACTGTTGGTCGTGTCCGATCCTTACTCGTTGATTCAATCCCATTAGAT 1779
> Ahg899756 jgi|Araly1|899756|Al_scaffold_0004_406
Length=1779
Score = 870 bits (471), Expect = 0.0
Identities = 1320/1712 (77%), Gaps = 130/1712 (8%)
Strand=Plus/Plus
Query 171 TCAGTCGACGCTCCG-GAAACTATCAACCTTCAC-CGTGGAACCATTGTTATCTCCTCTC 228
||| ||| || |||| | |||||||| ||||| | | ||| ||||| ||||||||||
Sbjct 135 TCA-TCGTCGTTCCGCG-AACTATCAGCCTTCTCTC-TGGGACCATCACCATCTCCTCTC 191
Query 229 CATCGAGAATAAATATGCGAGTGA-AACAG-A-AGTAATA-ACTAGAGATGTGTTGAAGA 284
|||||||||||||| || || || || | |||| | | |||||| ||||||||
Sbjct 192 GGTCGAGAATAAATATATGAAAGATAAAAGTAGTGTAAGAGA-GAGAGATTTGTTGAAGG 250
Query 285 AAAAAGTGA-AGAGCATGCTTGATGATGAGAAGAAGAGC-CGTCTCGAGCAATTAGAGCT 342
||||||||| | || |||||| ||||| ||||||||| | | | || ||||| ||| |
Sbjct 251 AAAAAGTGAGAAAG-ATGCTTAATGATAAGAAGAAGA-CTTATGTTGACCAATTGGAGTT 308
Query 343 CATCGATGATCTGCAAAAACTTGGGGTTTCGTATCATTTTG-AGATAGAAATAAATGATA 401
||| |||||||| || ||||| ||| |||| |||||||||| || ||||| || ||
Sbjct 309 CATTGATGATCTACAGAAACTCGGGATTTCTTATCATTTTGAAG-CGGAAATGGAT-AT- 365
Query 402 C-TTTGACAGATCTTCAT-CTTAAAATGGGAAGAAATTGCTGGAAATGTGACAAGGAAGA 459
| ||| | | |||||| | | |||| | | || || | ||| || | || |||
Sbjct 366 CATTTTA-ACATCTTCTTAC-CAAAAAGAG-AG-AA---C---AAACGT--C-CGGGAGA 412
Query 460 -AGATTTACATGCAACCTCACTCGAATTCCGACTTCTT-AGACAACATGGTTTTG-ATGT 516
|| ||||||| ||| ||||||||||||||||| || ||||||||||| |||| ||||
Sbjct 413 GTGACCTACATGCCACCGCACTCGAATTCCGACTT-TTCAGACAACATGG-TTTGAATGT 470
Query 517 CTCAGAAAATATATTTGATGTGATCATCGACCAAA-TAGAAAGTAATACGTTCAAG-ACC 574
|||||| || |||| ||||| |||| || ||| | | | | | ||| | |
Sbjct 471 TTCAGAAGATGTATTCGATGTTTTCAT-GA--AAATTTG--TGGGA-A-GTT-TGGCAGT 522
Query 575 AACAATATAAACGGTATCATT-TCT-TTGTACGAAGCGTCGTATCTTTCCACGAAA-TCG 631
| ||||| | ||| || || ||| || |||||||||||||||||||| || ||| |||
Sbjct 523 GATGATATATATGGTTTC-TTATCTCTT-TACGAAGCGTCGTATCTTTCGAC-AAAGTCG 579
Query 632 GATACTAAATTGCATAAAGT-CATCAGACCTTTTGCAACAGAACAAATAAGAAAATTTGT 690
||||| ||| |||| ||| | ||||||||||||||||||| ||||| | ||| | |||||
Sbjct 580 GATACAAAACTGCA-AAAATGCATCAGACCTTTTGCAACACAACAACTCAGACACTTTGT 638
Query 691 TGATGA-TGA-AGATACT-AAAAACATTGA--G-GT-AC---G-AGAGAAGG-CGTATCA 738
|||| | | | || || | |||| | || | || || | |||| || || ||
Sbjct 639 TGAT-ACTCATAG-TAATGAAAATTGTGGATCGTGTGACATGGTGGAGATGGTGGT-CCA 695
Query 739 TGCCTTAGAAATGCCGTACCATTGGAGAATGAGAAGGCTAGACACGAGATGGTACATAGA 798
| ||||| ||||| ||| ||||| ||||||||||| ||||||| ||| ||||||||||
Sbjct 696 AACGTTAGATATGCCCTACTATTGGCGAATGAGAAGGTTAGACACCAGACGGTACATAGA 755
Query 799 TGCATAT-GAGAAGAAACATGACATGAATCTTGTCTTGA-TCGAGTTTGCAAAAATTGAT 856
|| ||| || |||| |||| ||| ||| |||||| | | | || ||||| || |||||
Sbjct 756 TGTGTATGGA-AAGAGACATAACAAGAACCTTGTCCT-ACTTGAATTTGCCAAGCTTGAT 813
Query 857 TTCAATATCGTACAAGCTGCTCATCAAGAAGATCTCAAATACGTTTCAAGATGGTGGAAG 916
||||| |||||||||||| ||||||||| || |||||| |||| || || ||||||| |
Sbjct 814 TTCAACATCGTACAAGCTATTCATCAAGAGGAACTCAAACACGTATCCAGCTGGTGGAGG 873
Query 917 GATACATGTTTGA-CTAACCAACTTC-CCTTTGTAAGAGATAGAATAGTCGAGAACTATT 974
|| ||| |||| | ||| |||| || ||||| |||||| || ||||| ||||| ||||
Sbjct 874 GAGACAGGTTT-AGGTAAGCAAC-TCTACTTTGCAAGAGACAGGATAGTGGAGAATTATT 931
Query 975 TTTGGACCG-TTGGATTAATATACGAACCACAATTTGGATATATCCGACGGATCATGACT 1033
|||||| || ||||| ||| | || || |||| ||||| | |||| || ||||||
Sbjct 932 TTTGGA-CGATTGGACAAATCCAAGAGCCTCAATACGGATACGTTCGACAAATAATGACT 990
Query 1034 ATAGTTAATGCCCTTGTTACAACCATTGACGACATCTACGATATCTATGGCACTCTTGAA 1093
| | | ||||| ||| |||| || ||||| || |||||||||||||||||||||||||||
Sbjct 991 AAAATAAATGCACTTCTTACTACTATTGATGATATCTACGATATCTATGGCACTCTTGAA 1050
Query 1094 GAACTAGAACTATTCACTTCCATGGTTGAAAATTGGGATGTAAATCGTCTTGGTGAGCTT 1153
|| || ||||| ||||||||| | ||||||||||||||||||||||||||| ||| ||
Sbjct 1051 GAGCTTGAACTTTTCACTTCCGCGTTTGAAAATTGGGATGTAAATCGTCTTGATGAACTC 1110
Query 1154 CCCGAGTATATGAGGTTGTGTTTTCTTATTTTATACAATGAAATCAATGGCATTGGATGT 1213
||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 1111 CCCGAGTATATGAGGTTGTGTTTTCTTGTTGTATACAATGAAGTCAATAGCATTGGATGT 1170
Query 1214 GATATACTCA-AATATAAAAAGATTGACGTCATTCC-TTACCTCAAGAAATCGTGGGCAG 1271
||||| || | || ||||||| || |||| || || || |||||| ||||| ||| |||
Sbjct 1171 GATATTCTAAGAA-ATAAAAATATCAACGTGATCCCATT-CCTCAAAAAATCTTGGACAG 1228
Query 1272 ATTTATGTAGAA-CATATCTAGTGGAAGCAAAGTGGTACAAAAGAGGATACAAACCAAGC 1330
|| |||| | || ||||| |||| |||||||||||||||||||| || |||||||||
Sbjct 1229 ATGTATGCA-AAGCATATTTAGTAGAAGCAAAGTGGTACAAAAGTGGGCACAAACCAAAT 1287
Query 1331 TTGGAAGAATATATGCAAAATGCTTGGATTTCAATTTCTGCCCCAACAATATT-GATCCA 1389
|||||||| || ||||||||||||||||||||||| || |||||||| ||||| | || |
Sbjct 1288 TTGGAAGAGTACATGCAAAATGCTTGGATTTCAATCTCGGCCCCAACGATATTTGTTC-A 1346
Query 1390 CTTTTACTGCGTTTTCTCTGACCAAATCTC-AGTTCAAAA-CTTAGAGACTTTGTCTC-A 1446
||| |||||||| ||||||| ||| |||| | || || ||| ||||||||||| | |
Sbjct 1347 CTTCTACTGCGTATTCTCTGCCCAGCTCTCTA-TT-AAGGTCTTGGAGACTTTGTC-CGA 1403
Query 1447 ACACCGACAACACATCGTCCGATGCTCAGCCACCGTTCTTC-GTTTAGCTAACGACCTTG 1505
||||| |||| ||||||||||| |||| ||| | || ||| || |||| ||||||||||
Sbjct 1404 ACACCAACAAAACATCGTCCGAAGCTCTGCCTCAGTG-TTCCGTCTAGCCAACGACCTTG 1462
Query 1506 GAACTTCGCCA-ACTGAATTGGCGAGAGGAGACGTTCT-CAAATCGGTCCAATGTTACAT 1563
||| || || | ||||||||||||||||||||| || |||||| |||||||||||||
Sbjct 1463 TAACCTCACCGGA-TGAATTGGCGAGAGGAGACGT-CTGCAAATCCATCCAATGTTACAT 1520
Query 1564 GCA-TGAGACCGGAGCTTCAGAGGA-AAGGGCACGTGATCACGTG--CATCAGATGATTA 1619
| | ||| | ||||| |||||||| || | | ||| | ||| || | |||||||| |
Sbjct 1521 G-AGTGAAAATGGAGCATCAGAGGATAAAG-CGCGT-A-CACATGTTCGGCAGATGATCA 1576
Query 1620 GCGACATGTGGGACGACATGAACTCCGAAACAAAAACGGCATGCA-AT-TCTTCG-T-CA 1675
|||| ||||||| || ||||| | ||| | ||| |||| || | |||||| | |
Sbjct 1577 ACGACTTGTGGGATGAAATGAATTACGAGA-AAAT--GGCA--CATAGCTCTTCGCTACT 1631
Query 1676 CGTTC-TAGAGGTTTTAAGGAAGCTGCAATGAATCT-GGCACGCATGTCGCAATGCATGT 1733
| || | || ||||| |||| | | || || || |||||||||||| ||||||||||
Sbjct 1632 CCATCAT-GA--TTTTATGGAAACAGTGATAAA-CTTGGCACGCATGTCTCAATGCATGT 1687
Query 1734 ATCAATATGGTGATGGTCATGGATGC-CCTGAAAAAGCCAAGACCATTGATCGTGTCCAA 1792
|||||||||||||||| ||||| | | |||||||||||||| | | || |||||||| |
Sbjct 1688 ATCAATATGGTGATGGCCATGGCT-CTCCTGAAAAAGCCAAAATCGTTAATCGTGTC-AT 1745
Query 1793 -TCCTTACTCGTTGA-TCCAATTCCATTAGAT 1822
||| || || || | ||| ||||| ||||||
Sbjct 1746 GTCCATAATC-TTCAATCCGATTCCTTTAGAT 1776
> Ahg932440 jgi|Araly1|932440|scaffold_400428.1
Length=1561
Score = 780 bits (422), Expect = 0.0
Identities = 1229/1602 (77%), Gaps = 122/1602 (8%)
Strand=Plus/Plus
Query 276 TGTTGAAGAAAAAAGTGA-AGAGCATGCTTGATGATGAGAAGAAGAGC-CGTCTCGAGCA 333
|||||||| ||||||||| | || |||||| ||||| ||||||||| | | | || ||
Sbjct 3 TGTTGAAGGAAAAAGTGAGAAAG-ATGCTTAATGATAAGAAGAAGA-CTTATGTTGACCA 60
Query 334 ATTAGAGCTCATCGATGATCTGCAAAAACTTGGGGTTTCGTATCATTTTG-AGATAGAAA 392
||| ||| |||| |||||||| || ||||| ||| |||| |||||||||| || ||||
Sbjct 61 ATTGGAGTTCATTGATGATCTACAGAAACTCGGGATTTCTTATCATTTTGAAG-CGGAAA 119
Query 393 TAAATGATAC-TTTGACAGATCTTCAT-CTTAAAATGGGAAGAAATTGCTGGAAATGTGA 450
| || | || ||| | | |||||| | | |||| | | || || | ||| ||
Sbjct 120 TCGAT-A-ACATTTTA-ACATCTTCTTAC-CAAAAAGAG-AG-AA---C---AAACGT-- 165
Query 451 CAAGGAAGA-AGATTTACATGCAACCTCACTCGAATTCCGACTTCTT-AGACAACATGGT 508
| || ||| || ||||||| ||| ||||||||||| ||||| || |||||||||||
Sbjct 166 C-CGGGAGAGTGACCTACATGCCACCGCACTCGAATTCAGACTT-TTCAGACAACATGG- 222
Query 509 TTTG-ATGTCTCAGAAAATATATTTGATGTGATCATCGACCAAATAGAAAGTAATACGTT 567
|||| |||| |||||| || |||| || |||| || | ||| | || || | |||
Sbjct 223 TTTGAATGTTTCAGAAGATGTATTCGA--TGAT-TTC-ATGAAA-A-AATGTGGGAAGTT 276
Query 568 CAAG-ACCAACAATATAAACGGTATCATT-TCT-TTGTACGAAGCGTCGTATCTTTCCAC 624
| | | ||||| | ||| || || ||| || |||||||||||||||||||| ||
Sbjct 277 -TGGCAGTGATGATATATATGGTTTC-TTATCTCTT-TACGAAGCGTCGTATCTTTCGAC 333
Query 625 GAAA-TCGGATACTAAATTGCATAAAGT-CATCAGACCTTTTGCAACAGAACAAATAAGA 682
||| || ||||| ||| |||| ||| | ||||||||||||||||||| ||||| | |||
Sbjct 334 -AAAGTCAGATACAAAACTGCA-AAAATGCATCAGACCTTTTGCAACACAACAACTCAGA 391
Query 683 AAATTTGTTGATGATGAAGATACTAA-AAACATTG-AGGTACGAGAGA-A-GG-CG-TAT 736
| ||||||||| | ||| ||| || |||| ||| || | || | || | ||
Sbjct 392 GACTTTGTTGAT-A--CTCATAGTAATGAAGATTGTGGGT-CGTGTGACATGGTGGAGAT 447
Query 737 CAT-G-C----C-TTAGAAATGCCGTACCATTGGAGAATGAGAAGGCTAGACACGAGATG 789
| | | | ||||| ||||| ||| ||||| ||||||||||| ||||||| ||| |
Sbjct 448 GGTGGTCGAAACGTTAGATATGCCCTACTATTGGCGAATGAGAAGGTTAGACACCAGACG 507
Query 790 GTACATAGATGCATAT-GAGAAGAAACATGACATGAATC-TTGT-CTTGATCGAGTTTGC 846
|||||| |||| ||| || |||| |||| ||| ||| | ||| || | | || |||||
Sbjct 508 GTACATCGATGTGTATGGA-AAGAGACATAACAAGAA-CGCTGTCCTAG-TTGAATTTGC 564
Query 847 AAAAATTGATTTCAATATCGTACAAGCTGCTCATCAAGAAGATCTCAAATACGTTTCAAG 906
|| ||||||||||||||||||| ||| ||||||||| || |||||| |||| || ||
Sbjct 565 CAAGCTTGATTTCAATATCGTACAGGCTATTCATCAAGAGGAACTCAAACACGTATCCAG 624
Query 907 ATGGTGGAAGGATACATGTTTGA-CTAACCAACTTC-CCTTTGTAAGAGATAGAATAGTC 964
||||||| ||| ||| |||| | ||| |||| || ||||| |||||| || |||||
Sbjct 625 CTGGTGGAGGGAGACAGGTTT-AGGTAAGCAAC-TCTACTTTGCAAGAGACAGGATAGTG 682
Query 965 GAGAACTATTTTTGGACCG-TTGGATTAATATACGAACCACAATTTGGATATATCCGACG 1023
||||| |||||||||| || ||||| ||| | || || |||| ||||| | ||||
Sbjct 683 GAGAATTATTTTTGGA-CGATTGGACAAATCCAAGAGCCTCAATACGGATACGTTCGACA 741
Query 1024 GATCATGACTATAGTTAATGCCCTTGTTACAACCATTGACGACATCTACGATATCTATGG 1083
|| ||||||| | | ||||| ||| |||| || ||||| || |||||||||||||||||
Sbjct 742 AATAATGACTAAAATAAATGCACTTCTTACTACTATTGATGATATCTACGATATCTATGG 801
Query 1084 CACTCTTGAAGAACTAGAACTATTCACTTCCATGGTTGAAAATTGGGATGTAAATCGTCT 1143
|||||||||||| || ||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 802 CACTCTTGAAGAGCTTGAACTTTTCACTTCCGCGTTTGAAAATTGGGATGTAAATCGTCT 861
Query 1144 TGGTGAGCTTCCCGAGTATATGAGGTTGTGTTTTCTTATTTTATACAATGAAATCAATGG 1203
|| ||| || ||||||||||||||||||||||||||| || ||||||||||| ||||| |
Sbjct 862 TGATGAACTCCCCGAGTATATGAGGTTGTGTTTTCTTGTTGTATACAATGAAGTCAATAG 921
Query 1204 CATTGGATGTGATATACTCA-AATATAAAAAGATTGACGTCATTCC-TTACCTCAAGAAA 1261
||||||||||||||| || | || ||||||| || |||| || || || |||||| |||
Sbjct 922 CATTGGATGTGATATTCTAAGAA-ATAAAAATATCAACGTGATCCCATT-CCTCAAAAAA 979
Query 1262 TCGTGGGCAGATTTATGTAGAA-CATATCTAGTGGAAGCAAAGTGGTACAAAAGAGGATA 1320
|| ||| ||||| |||| | || ||||| |||| |||||||||||||||||||| || |
Sbjct 980 TCTTGGACAGATGTATGCA-AAGCATATTTAGTAGAAGCAAAGTGGTACAAAAGTGGGCA 1038
Query 1321 CAAACCAAGCTTGGAAGAATATATGCAAAATGCTTGGATTTCAATTTCTGCCCCAACAAT 1380
|||||||| ||||| || || ||||||||||||||||||||||| || |||||||| ||
Sbjct 1039 CAAACCAAATTTGGAGGAGTACATGCAAAATGCTTGGATTTCAATCTCGGCCCCAACGAT 1098
Query 1381 ATT-GATCCACTTTTACTGCGTTTTCTCTGACCAAATCTC-AGTTCAAAA-CTTAGAGAC 1437
||| | || |||| |||||||| ||||||| ||| |||| | || || ||| |||||
Sbjct 1099 ATTTGTTC-ACTTCTACTGCGTATTCTCTGCCCAGCTCTCTA-TT-AAGGTCTTGGAGAC 1155
Query 1438 TTTGTCTC-AACACCGACAACACATCGTCCGATGCTCAGCCACCGTTCTTC-GTTTAGCT 1495
|||||| | |||||| |||| || |||||||| |||| ||| | || ||| || ||||
Sbjct 1156 TTTGTC-CGAACACCAACAAAACGTCGTCCGAAGCTCTGCCTCAGTG-TTCCGTCTAGCC 1213
Query 1496 AACGACCTTGGAACTTCGCCA-ACTGAATTGGCGAGAGGAGACGTTCT-CAAATCGGTCC 1553
|||||||||| ||| || || | |||||| |||||||||||||| || |||||| |||
Sbjct 1214 AACGACCTTGTAACCTCACCGGA-TGAATTAGCGAGAGGAGACGT-CTGCAAATCCATCC 1271
Query 1554 AATGTTACATGCA-TGAGACCGGAGCTTCAGAGGA-AAGGGCACGTGATCACGTG--CAT 1609
||||||||||| | ||| | ||||| |||||||| || | ||||| |||| || |
Sbjct 1272 AATGTTACATG-AGTGAAAATGGAGCATCAGAGGATAAAG-CACGT--TCACATGTTCGG 1327
Query 1610 CAGATGATTAGCGACATGTGGGACGACATGAACTCCGAAACAAAAACGGCATGCA-AT-T 1667
|||||||| | |||| ||||||| || ||||| | ||| | ||| |||| || | |
Sbjct 1328 CAGATGATCAACGACTTGTGGGATGAAATGAATTACGAGA-AAAT--GGCA--CATAGCT 1382
Query 1668 CTTCG-T-CACGTTC-TAGAGGTTTTAAGGAAGCTGCAATGAATCT-GGCACGCATGTCG 1723
||||| | | | || | || ||||| |||| | | || || || ||||||||||||
Sbjct 1383 CTTCGCTACTCCATCAT-GA--TTTTATGGAAACAGTGATAAA-CTTGGCACGCATGTCT 1438
Query 1724 CAATGCATGTATCAATATGGTGATGGTCATGGATG-CCCTGAAAAAGCCAAGACCATTGA 1782
|||||||||||||||||||||||||| ||||| | ||| ||||||| || | | ||||
Sbjct 1439 CAATGCATGTATCAATATGGTGATGGCCATGGCTCTCCCA-AAAAAGCTAAAATCGTTGA 1497
Query 1783 TCGTGTCCA-ATCCTTACTCGTTGA-TCCAATTCCATTAGAT 1822
||||||| | |||| || | || | ||| ||||| ||||||
Sbjct 1498 TCGTGTC-ATATCCATAATA-TTCAATCCGATTCCTTTAGAT 1537
> Ahg936269 jgi|Araly1|936269|scaffold_500460.1
Length=410
Score = 279 bits (151), Expect = 4e-74
Identities = 275/332 (83%), Gaps = 19/332 (6%)
Strand=Plus/Plus
Query 1295 GAAGCAAAGTGGTACAAAAGAGGATACAAACCAAGCTTGGAAGAATATATGCAAAATGCT 1354
|||| || ||||||||||||||||||||| |||| ||| |||||||| ||||||||||||
Sbjct 82 GAAGTAAGGTGGTACAAAAGAGGATACAAGCCAAACTT-GAAGAATACATGCAAAATGCT 140
Query 1355 TGGATTTCAATTTCTGCCCCAACAATATTGATCCACTTTTACTGCGTTTTCTCTGACCAA 1414
|||||||||||||||||||| ||||| || || ||| || |||| | |||||||||| ||
Sbjct 141 TGGATTTCAATTTCTGCCCCGACAATGTTAATTCACATTCACTGTGCTTTCTCTGACGAA 200
Query 1415 ATCTCAGTTCAAAACTTAGAGA-CTTTGTCTCAACACCGACAACAC--A-TC--GTCCGA 1468
|||||| ||||| ||| | | | || || |||||||| ||||| | || ||||||
Sbjct 201 ATCTCAATTCAAGTCTTGGGGGTCATTATCCCAACACCGGCAACAAGTAGTCCTGTCCGA 260
Query 1469 TGCTCAGCCACCGTTCTTCGTTTAGCTAACGACCTTGGAACTTCGCCA-ACTGAATTGGC 1527
||||| |||||| | || | | ||| ||||||||||||||| | | |||||||||
Sbjct 261 TGCTCTGCCACCATCCTCCAT----CTA--GACCTTGGAACTTCGACGGA-TGAATTGGC 313
Query 1528 GAGAGGAGACGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGCTTCAGAGGA 1587
||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 314 GAGAGGAGATGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGCATCCCAGGA 373
Query 1588 A-AGGGCACGTGA-TCACGTGCATCAGATGAT 1617
| ||| ||||||| | | ||||| ||||||||
Sbjct 374 AGAGG-CACGTGAGT-AGGTGCAGCAGATGAT 403
> Ahg322722 jgi|Araly1|322722|fgenesh1_pm.C_scaffold_5000266
Length=270
Score = 226 bits (122), Expect = 5e-58
Identities = 221/267 (83%), Gaps = 13/267 (5%)
Strand=Plus/Plus
Query 1562 ATGCATGAGACCGGAGCTTCAGAGGAAAG-GGCACGTG-ATCACGTGCATCAGATGATTA 1619
|||||||||||||||| ||| |||| ||| |||||| | | || ||||| |||||||| |
Sbjct 1 ATGCATGAGACCGGAGTTTCGGAGG-AAGAGGCACGCGCA-CATGTGCAGCAGATGATAA 58
Query 1620 G-CGACA-TGTGGGACGACATGAACTCCGAA--AC-AAAAACGGCATGCAATTCTTCGTC 1674
| | || | |||||||| ||||||| ||| || || ||||| ||| |||||| |
Sbjct 59 GTC-TCACT-TGGGACGAGATGAACTATGAAGCACGAACGGCGGCACGCAGTTCTTCCTT 116
Query 1675 ACGTTCTAGAGGTTTTAAGGAAGCTGCAATGAATC-TGGCACGCATGTCGCAATGCATGT 1733
|| |||| || ||||| |||| |||||||||| | ||||||||||||||||||||||||
Sbjct 117 ACTTTCTCGACGTTTTGTGGAAACTGCAATGAA-CTTGGCACGCATGTCGCAATGCATGT 175
Query 1734 ATCAATATGGTGATGGTCATGGATGCCCTGAAAAAGCCAAGACCATTGATCGTGTCCAAT 1793
||||| |||| ||||||||||| || ||||| |||||||||| | ||||||||||||||
Sbjct 176 ATCAACATGGCGATGGTCATGGCTGTCCTGACAAAGCCAAGATCGTTGATCGTGTCCAAA 235
Query 1794 CCTTACTCGTTGATCCAATTCCATTAG 1820
|||| |||||||||||||| |||||||
Sbjct 236 CCTTGCTCGTTGATCCAATCCCATTAG 262
> Ahg936263 jgi|Araly1|936263|scaffold_500454.1
Length=331
Score = 180 bits (97), Expect = 4e-44
Identities = 148/170 (87%), Gaps = 14/170 (8%)
Strand=Plus/Plus
Query 270 GAGATGTGTTGAAGAAAAAAGTGAAGA-GCATGCTTGATGATG-AGAAGAAGAGCCGTCT 327
||||||||||||||||||||||||||| | |||||||||| || | ||||||||||||||
Sbjct 166 GAGATGTGTTGAAGAAAAAAGTGAAGATG-ATGCTTGATGTTGTA-AAGAAGAGCCGTCT 223
Query 328 CGAGCAATTAGAGCTCATCGATGATCTGCAAAAACTTGGGGTTTCGTATCATTTTGAGAT 387
|||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |
Sbjct 224 CGAGCAATTAGAGCTCATGGATGATCTGCAAAAACTTT---TTTCATATCATTTTGAGCT 280
Query 388 AGAAATAAATGATACTTTGACAGATCTTCATCTTAAAA-TGGGAAGAAAT 436
| ||||||||||| |||| || |||||||||||| ||| |||||||
Sbjct 281 ACAAATAAATGAT-----GACATATTTTCATCTTAAAAATGG-AAGAAAT 324
Score = 163 bits (88), Expect = 4e-39
Identities = 125/143 (87%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 62 GCTCTTATTTACCAAAATACCCTCACCCACCATTTTCGTCTTCGACGTCCTCACCGTTTC 121
||| || ||||||||||||| || ||||| |||||| | ||||||||||||||||||||
Sbjct 24 GCTATTTTTTACCAAAATACTCTTACCCAGTATTTTCATATTCGACGTCCTCACCGTTTC 83
Query 122 GTATGCAAGTCCATGACCAAAACGACGCCGGATACTACT-CTTGTTGAACTCAGTCGACG 180
|||||||||||||||||||||||||||||||| ||| | || | ||| ||| |||||||
Sbjct 84 TTATGCAAGTCCATGACCAAAACGACGCCGGATGCTAGTTCT-GCTGACCTCCGTCGACG 142
Query 181 CTCCGGAAACTATCAACCTTCAC 203
|||| | ||||||||||||||||
Sbjct 143 CTCCAGCAACTATCAACCTTCAC 165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73057089910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5