BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25840.1
Length=3414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484347 jgi|Araly1|484347|fgenesh2_kg.5__339__AT3G25840.1 4713 0.0
Ahg485754 jgi|Araly1|485754|fgenesh2_kg.5__1746__AT3G53640.1 935 0.0
Ahg928493 jgi|Araly1|928493|scaffold_300950.1 124 3e-27
> Ahg484347 jgi|Araly1|484347|fgenesh2_kg.5__339__AT3G25840.1
Length=3152
Score = 4713 bits (2552), Expect = 0.0
Identities = 2897/3059 (95%), Gaps = 42/3059 (1%)
Strand=Plus/Plus
Query 84 ATTTCGA-TTACGACGATACTCTCTGATGGCGAACGATAAGCAGATCGAATCTCACCACC 142
||||||| || ||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATTTCGACTT-CGACGATCCTCTCTGATGGCGAACGATAAGCAAATCGAATCTCACCACC 59
Query 143 GCAAGCATCACCGTTCATCTTCGTCGTCCGATGACACTGAAAAAGCATCGAAACGACACA 202
|||||||||||||||||||||| |||||||| || || || ||| |||||||||| ||||
Sbjct 60 GCAAGCATCACCGTTCATCTTCCTCGTCCGACGAGACCGAGAAATCATCGAAACGGCACA 119
Query 203 AGCATCGTCATCACAAG---CATCATCACCACAGGCATCGCCATCACCGAGATAAGAAGC 259
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCACCGTCATCACAAGCATCATCATCACCACAGGCATCGCCATCACCGAGATAAGAAGC 179
Query 260 GCGAAAATGAAATTCCATCCGCCGGCGATGAGACAGAGAT-ATTGGATGTTACTCCGGCG 318
|||| |||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 180 GCGACGATGAAATTCCATCCGCCGGCGATGAGACAGCGATGATT-GATGTTACTCCGGCG 238
Query 319 GCTCCAATTGTTGTTAGTAACGGCTGTGAGGAGGAGGATGTGGAGGAAGGAGAGATTTTA 378
|||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 239 GCTCCAATTGGTGTTAGTAACGGCTGT---GAGGAGGATGTGGAGGAAGGGGAGATTTTA 295
Query 379 GAAGAAGATGGGATTGGTGATGTTTTGATGAAGACGGCAGATTCCGACGGCGAATCAGGC 438
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||| | ||||
Sbjct 296 GAAGAAGATGCGATTGGTGATGGTTTGATAAAGACGGCAGATTCCGACGGCGAGTTAGGC 355
Query 439 GAAATCAAATTTGAAGATAATAATCTGCCTCCACTTGGGGAAAAAGGGCGTCAAGGAGAA 498
||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 356 GAAAT-AAA-AT-CCGATAATAATCTGCCTCCATTTGGGGAAAAAGGGCGTCAAGGAGAA 412
Query 499 GAAAAGAGTTCTAATGGTGTTCTAACTCGTGAATCTGAAAGGGAGGATAAGAGGTGGGAT 558
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GAGGAGACTTCTAATGGTGTTCTAACTCGTGAATCTGAAAGGGAGGATAAGAGGTGGGAT 472
Query 559 AAAGAAGCTGGAGGTCCTTCAGAGAGAGTTAGTAA-ATTAAGTTATGATAATGGC-AGAA 616
||||| ||| ||||| |||||||||| |||||||| | ||||||||||||||||| || |
Sbjct 473 AAAGATGCTAGAGGTACTTCAGAGAGGGTTAGTAAGA-TAAGTTATGATAATGGCAAG-A 530
Query 617 GTTCGTTTTCTCCGTCAAACAGCAGGCAGTCTAACGAAGGCCGTGCCCGGAGTAGATCTA 676
||||||||||| ||||||| |||||||||||||| |||| |||||| |||||||||||||
Sbjct 531 GTTCGTTTTCTTCGTCAAATAGCAGGCAGTCTAATGAAGTCCGTGCTCGGAGTAGATCTA 590
Query 677 AGTCACATGATCGGGAGAGAGAAACTTCTAGGTCAAGGTTTGCGGAGGATGAGTTTTCGG 736
||||||||||||||||||||| | || |||||||||||||||||| ||
Sbjct 591 AGTCACATGATCGGGAGAGAG--------A----AA---TTGCGGAGGATGAGTTTTTGG 635
Query 737 ACAGAGGAAGACATCATGATTCTAGTAGGGATTATCATCATGACAGAGTTGACTCAGTTA 796
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 636 ACAGAGGGAGACATCGTGATTCTAGTAGGGATTATCATCATGACAGAGTTGACTCAGGTA 695
Query 797 GGACTGAGGAAAGATATCATCGACGTGGGCGATATGAGGAAAATGACAGGCAATATAGTC 856
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 696 GGGCTGAGGAAAGATATCATCGACGTGGGCGATATGAGGAAAATGACAGGCAATATAGCC 755
Query 857 GAGAAGTCTTGGAAAGAGATAGAAGTAAGGAGAGAGATATGGACAGGGAGGGAAGCATAA 916
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 GAGAAGTGTTGGAAAGAGATAGAAGTAAGGAGAGAGATATGGACAGGGAGGGAAGCATAA 815
Query 917 GAGATAGGGATTCGGAAGGAAGTAAGCggagagataaagatagtgatcggaggagggaaa 976
||||||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 816 GAGATAGGGATTCAGAAGCAAGTAAACGGAGAGAGAAAGATAGTGATCGGAGGAGGGAAA 875
Query 977 gagaacgagagaagagaagggagatagagtctgaccgtgaaagacgaaaagagaaggaac 1036
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 876 GAGAACGAGAGAAGAGAAGGGACATAGAGGCTGACCGTGAAAGACGAAAAGAGAAGGAAC 935
Query 1037 gagagCGCAGCATTGATAGGGATAGGAGAAAGGAGAGGGAAGGAGATTATTTACGGGAta 1096
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 936 GAGAGCGCAGCACTGATAGGGATAGGAGAAAGGAAAGGGAAGGAGATTATTTACGGGATA 995
Query 1097 gagccaatgagagaggtaggagtagagatagaaccaggtataacagcagagagaggaaga 1156
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GAGATAATGAAAGAGGTAGGAGTAGAGATAGAACCAGGTATAACAGCAGAGAGAGGAAGA 1055
Query 1157 gagaaaaggaaagggagggtgaaaaagattgggagagaggaagagaaacccagaaagata 1216
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1056 GAGAAAAGGAAAGGGAGGGTGAAAAAGATTGGGAGCGAGGAAGAGAAACCCAGAATGATA 1115
Query 1217 gggagaaGTACATAAGTAGTGATGTGGACTACGGTGAGATGAGGCACAAACAGTCTAGAA 1276
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1116 GGGAGAAGTACAGAAGTAGTGATGTGGACTACGGTGAGATGAGGCACAAACAGTCCAGAC 1175
Query 1277 ACACAAGATATGATGCGGTAGATGACCTAGAAATGAGAAAGCCAAATTCTTTGAAGGCCC 1336
| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| |
Sbjct 1176 ATTCAAGAGATGATGCGGTAGATGACGTAGAAATGAGAAAGCCAAATTCTTCGAAGGCAC 1235
Query 1337 ATAATTCTAAGGGTGATAAGTTAGAAGAAACGTGGGCCAATGATGAAAGGTCCCGAAATG 1396
|||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1236 ATAATTCTAAGGGTGATAAGACAGAAGAAAAGTGGGGCAATGATGAAAGGTCCCGAAATG 1295
Query 1397 AGGATGGTCAAGATGATAATGACGAAGGACTTACATGGAAATCTCCTGAGGAAGAAGAAG 1456
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 AGGATGGCCAAGATGATAATGACGAAGGACTTACATGGAAATCTCCTGAGGAAGAAGAAG 1355
Query 1457 AAGAATTACTAAATAGAATCAAGGAAGAGAGCAGGAAGCGAATGGAAGCCATACTGGAGA 1516
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1356 AAGAAGTACTAAATAGAATCAAGGAGGAGAGCAGGAAGCGAATGGAAGCCATACTGGAGA 1415
Query 1517 AACATAAGAGGAAGCCCGAGCAGCAAAATGAACTTTTAACTCAGGATAATGGGAAAGATA 1576
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 AACATAAGAAGAAGCCCGAGCAGCAAAATGAACTTTTAACTCAGGATAATGGGAAAGATG 1475
Query 1577 TTGTTCCAGAAACTGGTGCTCCAGTGTCGACTTCTCCTGCAGTTGTCATAGCAGCTAATG 1636
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 TTGTTCAAGAAACTGGTGCTCCAGTGTCGACTTCTCCTGCAGTTGTCATAGCAGCTAATG 1535
Query 1637 TAGGCCAGGCCAAAACTAACTTGGACTTTGATACTGTCGCTGCCAAGGCACCATTAATAG 1696
| || ||||| ||||||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 1536 TTGGTCAGGCTAAAACTAACTTGGACTTTGATACTGACGTTGCCAAGGCATCATTAATAG 1595
Query 1697 CCGGTGGGCCACCTACTATGTC-TGGAATTTCAGACTCAGAGAAGAATCAAGCTCAAGCG 1755
|||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||
Sbjct 1596 TCGGTGGGCCACCTACTAT-ACTTCCAATTTCAGACTCAGAGAAGAATCAAGCTCCAGCG 1654
Query 1756 GGGCTTGGTGAAGGTAGCCCGAAGAGTGAAAGGTCAGCTGACATGTTTCATGATGATATC 1815
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1655 GGGCTTGGTGAAGGTAGCCCGAAGAGTGAAAGATCAGCTGACATGTTTCATGATGATATC 1714
Query 1816 TTTGGAGAGTCCCCGGCTGGTATCCGAAAAGTGGGAGGGAAAGGTGATGGTGTTCCCATG 1875
|||||||||||||| |||||| | || |||||||||||||||||||||||||||||||||
Sbjct 1715 TTTGGAGAGTCCCCAGCTGGTGTTCGGAAAGTGGGAGGGAAAGGTGATGGTGTTCCCATG 1774
Query 1876 GTGAGGAGCGGGCTTCATGATAATTGGGATGATGCAGAGGGTTATTATAGCTATCAGTTT 1935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 GTGAGGAGCGGGCTTCATGATAATTGGGATGATGCAGAGGGTTATTATAGCTATCAGTTT 1834
Query 1936 GGCGAGTTACTTGATGGTAGATATGAAGTCATTGCTACTCATGGAAAAGGTGTCTTCTCT 1995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 GGCGAGTTACTTGATGGTAGATATGAAGTCATTGCTACTCATGGAAAAGGTGTCTTCTCT 1894
Query 1996 ACTGTGGTTCGTGCTAAAGACTTGAAAGCTGGACCAGCTGAACCTGAAGAGGTGGCAATA 2055
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1895 ACTGTGGTTCGTGCGAAAGACTTGAAAGCTGGACCAGCTGAACCTGAAGAGGTGGCTATA 1954
Query 2056 AAAATTATCCGTAACAATGAGACGATGCATAAAGCTGGAAAGATTGAGGTTCAAATATTG 2115
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1955 AAAATTATCCGTAACAATGAGACGATGCATAAAGCTGGCAAGATTGAGGTTCAAATATTG 2014
Query 2116 AAGAAGCTGGCAGGCGCTGACCGAGAAGACAGGCGCCACTGTGTTCGATTTCTTTCAAGC 2175
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 2015 AAGAAGCTGGCTGGCGCTGACCGAGAGGACAGGCGCCACTGTGTTCGTTTTCTTTCAAGC 2074
Query 2176 TTTAAGTACCGTAATCACCTTTGCTTGGTGTTTGAGTCGCTCCATTTGAATCTTCGTGAG 2235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2075 TTTAAGTACCGTAATCACCTTTGCTTGGTGTTTGAGTCGCTCCATTTGAATCTTCGTGAG 2134
Query 2236 GTCTTGAAGAAGTTTGGTCGCAACATTGGTCTCCAACTCTCTGCTGTTAGGGCTTATTCA 2295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2135 GTCTTGAAGAAGTTTGGTCGCAACATTGGTCTCCAACTCTCTGCTGTTAGGGCTTATTCA 2194
Query 2296 AAGCAGCTATTCATTGCTCTTAAACATCTGAAGAATTGTGGGGTACTTCACTGCGATATA 2355
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2195 AAGCAGCTATTCATTGCCCTTAAACATCTGAAGAATTGTGGGGTTCTTCACTGCGATATA 2254
Query 2356 AAACCTGACAACATGCTGGTCAATGAGGGGAAAAATGTCTTAAAGCTTTGTGATTTTGGT 2415
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct 2255 AAACCTGACAACATGCTGGTCAACGAGGGGAAAAATGTGTTAAAGCTTTGTGACTTCGGT 2314
Query 2416 AATGCAATGTTTGCAGGCAAAAACGAAGTTACACCGTATCTTGTTAGTCGCTTTTACAGA 2475
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2315 AATGCAATGTTTGCTGGCAAAAACGAAGTTACACCGTATCTTGTTAGTCGCTTTTACAGA 2374
Query 2476 TCCCCTGAAATTA-T---T--CTGGGGCTCACCTATGACCATCCGTTGGATATATGGTCT 2529
||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||
Sbjct 2375 TCCCCTGAAATTAGTAAGTATCTGGGTCTCACCTATGACCATCCGTTGGATATATGGTCT 2434
Query 2530 GTTGGCTGCTGTCTGTATGAGCTTTATAGTGGAAAAGTTCTTTTCCCTGGCGCCACAAAC 2589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2435 GTTGGCTGCTGTCTGTATGAGCTTTATAGTGGAAAAGTTCTTTTCCCTGGCGCCACAAAC 2494
Query 2590 AATGATATGTTACGCCTTCATATGGAACTGAAAGGTCCCTTCCCTAAAAAGATGCTTCGC 2649
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2495 AATGATATGTTACGACTTCATATGGAACTGAAAGGTCCCTTCCCTAAAAAGATGCTTCGC 2554
Query 2650 AAGGGAGCATTTATTGATCAGCACTTTGATCATGACTTGAACTTTTATGCTACAGAGGAA 2709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2555 AAGGGAGCATTTATTGATCAGCACTTTGATCATGACTTGAACTTTTATGCTACAGAGGAA 2614
Query 2710 GACACCGTTAGTGGAAAGCTGATAAAAAGAATGATCGTAAACGTGAAGCCGAAAGATTTT 2769
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 2615 GACACCGTTAGTGGAAAGCTGATTAAAAGAATGATCGTAAACGTAAAGCCAAAAGATTTT 2674
Query 2770 GGTTCCATCATTAAAGGTTACCCTGGTGAGGATCCCAAGATCTTAGCTCATTTCAGGGAT 2829
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2675 GGTTCAATCATTAAAGGTTACCCTGGTGAGGATCCCAAGATGTTAGCACATTTCAGGGAT 2734
Query 2830 CTCTTGGACAAAATGTTCATCCTTGATCCCGAGAGGAGACTGACTGTGTCACAGGCATTA 2889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2735 CTCTTGGACAAAATGTTCATCCTTGATCCCGAGAGGAGACTGACTGTGTCACAGGCATTA 2794
Query 2890 GCTCACCCATTCATCACTGGCAAGTGAAACCACATTGCCATTTTCCCTCTCTGTTGTATC 2949
|||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 2795 GCTCACCCATTCATCACTGGCAAGTGAAACCACATTGCCACTTTC--TCTCTGTTATATC 2852
Query 2950 AGGAAATGCTGTTGTCCTAGATATCTGTACATTAAATATCTTAATTACCATTGAAGGATC 3009
|||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||
Sbjct 2853 AGGAAATGCTGTTGTCCTAGATATCTGTACATTACACATCTTAATTACAATTTAAGGATC 2912
Query 3010 TAATCTTTGAATTTTCTCTACCTTCCCTCTGCTGCCTGAGAGAGCTTTGGTTACAATGTC 3069
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 2913 TAATCTTTGAATTTTCTCTACCTTCCTTCTGCTGCCTGAGAGAGCTTTGATTACAATGTC 2972
Query 3070 GACATGGGTGGAGTTCTCATTACCGACGATTCTCAGGGGACTTTACTGGTTCTCTATTG 3128
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2973 GACATGGGTGGAGTTCTCATTACCGACGATTCTCAGGGGACTTTACTGGTTCTCTATTG 3031
> Ahg485754 jgi|Araly1|485754|fgenesh2_kg.5__1746__AT3G53640.1
Length=1917
Score = 935 bits (506), Expect = 0.0
Identities = 946/1151 (82%), Gaps = 59/1151 (5%)
Strand=Plus/Plus
Query 1794 TGACATGTTTCA-TGATGATATCTTTGGAGAGTC-CC--CGGCTGGTATC-CGAAAAGTG 1848
||||||| |||| ||||||||||||||| ||||| || | ||||||| | || |||
Sbjct 798 TGACATG-TTCAGTGATGATATCTTTGGGGAGTCTCCAGCTGCTGGTA-CTCGGAAA--- 852
Query 1849 GGAGGGAAAGGTGATGGTGTTCCCATGGTGAGGAGCGGGCTTCATGATAATTGGGATGAT 1908
||| || || | |||||| | || ||||| || || ||||||||||||||||||
Sbjct 853 GGA---AATGG-CCT--TGTTCCTTTTGTAAGGAGTGGACTCCATGATAATTGGGATGAT 906
Query 1909 GCAGAGGGTTATTATAGCTATCAGTTTGGCGAGTTACTTGATGGTAGATATGAAGTCATT 1968
||||| || || || || ||||||||||| || ||||||||| ||| |||||| ||||
Sbjct 907 GCAGAAGGATACTACAGTTATCAGTTTGGTGAACTACTTGATGATAGGTATGAAATCATG 966
Query 1969 GCTACTCATGGAAAAGGTGTCTTCTCTACTGTGGTTCGTGCTAAAGACTTGAAAGCTGGA 2028
||||||||||||||||||||||||||||| ||||| || || |||||| ||| ||| |
Sbjct 967 GCTACTCATGGAAAAGGTGTCTTCTCTACCGTGGTGCGGGCAAAAGACACAAAACCTGAA 1026
Query 2029 CCAGCTGAACCTGAAGAGGTGGCAATAAAAATTATCCGTAACAATGAGACGATGCATAAA 2088
| |||||||||||| || ||||| |||||| |||| || ||||||||||| ||||||||
Sbjct 1027 CTAGCTGAACCTGAGGAAGTGGCTATAAAATTTATTCGGAACAATGAGACAATGCATAAG 1086
Query 2089 GCTGGAAAGATTGAGGTTCAAATATTGAAGAAGCTGGCAGGCGCTGA-CC-GAGAAGACA 2146
||||| || |||| ||| |||||||||||||| || ||| |||| || ||||| | |
Sbjct 1087 GCTGGCCAGGCTGAGATTCGGATATTGAAGAAGCTAGCTGGCTCTGACCCAGAGAATA-A 1145
Query 2147 GGCGCCACTGTGTTCGAT-TTCTTTCAAGC-TTTAAGTACCGTAATCACCTTTGCTTGGT 2204
||||||||| || || | ||||||||| | ||||| || | || ||||||||||||||
Sbjct 1146 -GCGCCACTGCGTCCG-TCTTCTTTCAA-CTTTTAAATATAGGAACCACCTTTGCTTGGT 1202
Query 2205 GTTTGAGTCGCTCCATTTGAATCTTCGTGAGGTCT-TGAAGAAGTTTGGTCG-CAACATT 2262
||||||||| || ||| ||||||| ||||| || | |||||||| ||||| | |||||||
Sbjct 1203 GTTTGAGTCTCTTCATCTGAATCTCCGTGAAGT-TGTGAAGAAGATTGGT-GTCAACATT 1260
Query 2263 GGTCTCCAACTCTCTGCTGTTAGGGCT-TATTCAAAGCAGCTATTCAT-TGCTCTTAAAC 2320
||||| |||| |||| |||||| | | ||| | ||||| ||||||| | | |||||||
Sbjct 1261 GGTCTAAAACTATCTGATGTTAGAG-TGTATGCTGAGCAGTTATTCATAT-CCCTTAAAC 1318
Query 2321 ATCTGAAGAATTGTGGGGTACTTCACTGCGATATAAAACCTGACAACATGCTGGTCAATG 2380
|||| |||||||||||||| ||||||||||||||||| ||||||||||| || || ||||
Sbjct 1319 ATCTCAAGAATTGTGGGGTTCTTCACTGCGATATAAAGCCTGACAACATACTAGTGAATG 1378
Query 2381 AGGGGA-AAA-ATGTCTTAAAGCTTTGTGATTTTGGTAATGCAATGTTTGCAGGCAAAAA 2438
|||||| ||| ||| |||||||||||||| ||||||| |||||||||||| || ||||
Sbjct 1379 AGGGGAGAAACATG--TTAAAGCTTTGTGACTTTGGTAGTGCAATGTTTGCTGGTGAAAA 1436
Query 2439 CGAAGTTACACCGTATCTTGTTAGTCGCTTTTACAGATCCCCTGAAATTATTCTGGGGCT 2498
| |||||||||| ||||||||||||||||| |||||| | || ||||| ||||| || ||
Sbjct 1437 CCAAGTTACACCATATCTTGTTAGTCGCTTCTACAGAGCTCCAGAAATCATTCTTGGACT 1496
Query 2499 CA-CCTATGACCATCCGTTGGATATATGGTCTGTTGGCTGCTGTCTGTATGAGCTTTATA 2557
| |||| ||||||||||| ||||| |||||||| || || || ||||||||||||||||
Sbjct 1497 -ATCCTACGACCATCCGTTAGATATCTGGTCTGTGGGTTGTTGCCTGTATGAGCTTTATA 1555
Query 2558 G-TGGAAAAGTTCTTTTCCCTGGCGCCACAAACAATGATATGTTACGCCTTCATATGGAA 2616
| |||||| || | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1556 GCGGGAAAA-TTATGTTCCCTGGCTCCACAAACAATGATATGTTACGCCTTCATATGGAA 1614
Query 2617 CTGAAAGGTCCCTTCCCTAAAAAGATGCTTCGCAAGGGAGCATTTATTGATCAGCACTTT 2676
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1615 CTGAAAGGTCCCTTCCCTAAAAAGATGCTTCGCAAAGGAGCATTTATCGATCAGCACTTC 1674
Query 2677 GATCATGACTTGAA-CTTTTATGCTACAGAGGAAGACACCGTTAGTGGAAAG-CTGATAA 2734
||| | ||||| | ||| |||||||||||||| || | |||| ||||||| | ||||
Sbjct 1675 GATAAGGACTT-ATGCTTCTATGCTACAGAGGAGGATAGTGTTACTGGAAAGACC-ATAA 1732
Query 2735 AAAGAATGATCGTAAACGTGAAGCCGAAAGATTTTGGTTCCA-TCATTAAA-G--GTTAC 2790
||||| || |||||| | ||||| |||||||| ||||| | | |||| | | ||||
Sbjct 1733 GGAGAATAATGGTAAACATAAAGCCAAAAGATTTAGGTTC-AGTAATTAGACGACGTTAT 1791
Query 2791 CCTGG-TGAGGATCCCAA-GATCTTAGCTCATTTCAGGGATCT-CTTGGACAAAATGTTC 2847
|| ||| |||||||| | | || | |||||||||| |||| || ||||||||| |||
Sbjct 1792 GA-GGATGAAGATCCCAAAG-TGTTGGTTCATTTCAGGAATCTTCT-GGACAAAATTTTC 1848
Query 2848 ATC-CTTGATCC-CGAGAGGAGACTGACTGTGTCACAGGCATTAGCTCACCCATTCATCA 2905
| | |||||||| | | || ||||| || |||||||||||||||||||||||||||||||
Sbjct 1849 A-CACTTGATCCTCAAAAG-AGACTTACAGTGTCACAGGCATTAGCTCACCCATTCATCA 1906
Query 2906 CTGGCAAGTGA 2916
| ||||| |||
Sbjct 1907 CGGGCAAATGA 1917
> Ahg928493 jgi|Araly1|928493|scaffold_300950.1
Length=342
Score = 124 bits (67), Expect = 3e-27
Identities = 96/109 (88%), Gaps = 5/109 (5%)
Strand=Plus/Plus
Query 2576 CTGGCGCCACAAACAATGATATGTTAC-GCCTTCATATGGAACTGAAAGGTCCCTTC-CC 2633
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 168 CTGGCTCCACAAACAATGATATGTT-CTGCCTTCATATGGAACTGAAAGGTCCCTTCTCC 226
Query 2634 TAAAAAGATGCTTCGCAAGGGAGCATTTATTGATCAGCACTTTGATCAT 2682
|| ||||||||| ||||||||| | |||| |||||| |||| || |||
Sbjct 227 -AAGAAGATGCTTTGCAAGGGAGTAGTTATCGATCAGGACTT-GAGCAT 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128900999751
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5