BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G25850.1

Length=777
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484349 jgi|Araly1|484349|fgenesh2_kg.5__341__AT3G25850.1          470    8e-132


> Ahg484349 jgi|Araly1|484349|fgenesh2_kg.5__341__AT3G25850.1
Length=621

 Score =  470 bits (254),  Expect = 8e-132
 Identities = 279/291 (96%), Gaps = 2/291 (1%)
 Strand=Plus/Plus

Query  115  TGCTATTTTTGGGGGCATAAGGAATGCATCAAGCGCTCACTTCTGCATCCATCTCCATGC  174
            ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  75   TGCTACTTTTGGGGTCATAAGGAATGCATCAAGCGCTCACTTCTGCATCCATCTCCTTGC  134

Query  175  AAACATTCTCTCAAAATCTACACACTCGAGGCATTGGGCTATGCAGGTGACCATTGTCAT  234
            |||||||||||||| |||||||||  ||||||||||||||||| ||||||||||||||||
Sbjct  135  AAACATTCTCTCAAGATCTACACA--CGAGGCATTGGGCTATGGAGGTGACCATTGTCAT  192

Query  235  TTTTGTAGAGATTATCTTCTTGATGAtttttttCATTGTTTGATATGCAACATCAACATG  294
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct  193  TTTTGTAGAGATTATCTTCTTGATGATTTTTTTCATTGTTTGATATACAACATCAATATG  252

Query  295  GATCTCAAATGTCTTAAAGATCCACCACCATCAAGTATTTATCACCCAAAAAACCATATG  354
            ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  253  GATCTAAAATGTCTTAAAGATCCACCACCATCAAGTATTTATTACCCAAAAAACCATATG  312

Query  355  CATATGCTTACTCTTTTGCCGAGAGTGGTCACATTTACTTGTAATGCATGT  405
            |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  313  CATATGCTTACTCTTTTGGCGAGAGTGGTCACATTTACTTGTAATGCATGT  363


 Score =  206 bits (111),  Expect = 3e-52
 Identities = 180/210 (86%), Gaps = 17/210 (8%)
 Strand=Plus/Plus

Query  581  GTTGCTCCCATGGAGCTTTTACATGCTTGCGTTGTCCTAGTCTTGCATTTCATTTAAAAT  640
            ||||||||||||||||||||||||||   |||||||| ||| |||| |||||||||||||
Sbjct  416  GTTGCTCCCATGGAGCTTTTACATGCCCACGTTGTCCAAGTATTGCCTTTCATTTAAAAT  475

Query  641  GTGCGATGAAAGATGACGTGTGGGATGGAAAAGAATTCGAAGCTGAACCCAAAGAAGAGC  700
            ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||
Sbjct  476  GTGCGATGAAAGATGGCGTGTGGGATGGAAAAGAATTCGAAGCTGAACCGGAAGAAGAGC  535

Query  701  TTGAAGATGAA-C-----------TCGAAGATGATTCCGAA-AAGGAAATTGAAGATGAT  747
            ||||||||||| |           ||||||||||||||||| ||| |||| |||| ||||
Sbjct  536  TTGAAGATGAAACCGACGAAGAACTCGAAGATGATTCCGAAGAAG-AAATCGAAGGTGAT  594

Query  748  AGTTCTGAAGAAGAAATCGAAGAACCATAA  777
            |   | ||||||||||||||||||| ||||
Sbjct  595  AC--C-GAAGAAGAAATCGAAGAACAATAA  621



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28668433584


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5