BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G25855.1

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg896439 jgi|Araly1|896439|Al_scaffold_0005_405                     483    8e-136


> Ahg896439 jgi|Araly1|896439|Al_scaffold_0005_405
Length=345

 Score =  483 bits (261),  Expect = 8e-136
 Identities = 320/347 (92%), Gaps = 10/347 (3%)
 Strand=Plus/Plus

Query  29   ATGTCGGAAAAGAAGCAATGTTGTGTTGTGATGAGGATTAACTTGGATTGCAATGCTTGT  88
            ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    ATGTCGGAAAAGAAGCAATATTGTGTTGTGATGCGGATTAACTTGGATTGCAATGCTTGT  60

Query  89   TGTAGAAAAGCTAGGAGGATTATCATCAATATGAAAGAAGTTGATACACACATGATCAAC  148
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   TGTAGAAAAGCAAGGAGGATTATCATCAATATGAAAGAAGTTGACACACACATGATCAAC  120

Query  149  AAAAAGGAACGTCAAGTAATCCTTTGCGGACGGTTTCGACCATCCGATGTTGCATTAAAA  208
            ||||| |||||||||||||||||||||||||||||| ||||||| || |||||| |||||
Sbjct  121  AAAAAAGAACGTCAAGTAATCCTTTGCGGACGGTTTAGACCATCGGACGTTGCAGTAAAA  180

Query  209  CTGCAAAGGAAGATGAAACGGAGGGTTGAGATTCTCGAAGTTGAAGATCTCACCAATGGC  268
            ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  181  CTGCAAAAGAAGATGAAACGGAGGGTTGAGATTCTCGAAGTTGAAGATCTCGCCAATGGC  240

Query  269  CATGGAGGAGAAGAAGGA-AGC-----GAGC-ACGAGCTACCGTATGAACAGCCACATGA  321
            |||||||||||||||||| ||      |||| | |||| ||| |||||||||||| ||||
Sbjct  241  CATGGAGGAGAAGAAGGACAGGAATATGAGCCA-GAGCCACCATATGAACAGCCATATGA  299

Query  322  ATATTCT-AATCAACCTGATCAGATGACCACACCATTGTTGTGTTAG  367
            ||||||| || ||| ||||||| ||||||||||||||||||||||||
Sbjct  300  ATATTCTCAA-CAATCTGATCACATGACCACACCATTGTTGTGTTAG  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20222462170


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5