BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25860.1
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936275 jgi|Araly1|936275|scaffold_500466.1 2327 0.0
> Ahg936275 jgi|Araly1|936275|scaffold_500466.1
Length=1490
Score = 2327 bits (1260), Expect = 0.0
Identities = 1417/1492 (95%), Gaps = 14/1492 (1%)
Strand=Plus/Plus
Query 53 tctctctctG--TGATTCAACAATGGCGGTTTCTTCTTCTTCGTTTCTATCGACAGCTTC 110
|||||||||| | | |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1 TCTCTCTCTGATTCA-TCAACAATGGCGGTTTCTTCATCTTCGTTTCTATCGACAACTTC 59
Query 111 ACTAACCAATTCCAAATCCAACATTTCATTCGCTTCCTCAGTATCCCCATCCCTCCGCAG 170
||| ||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 60 ACTCACCAATTCCAAATCCAACATTTCCTTCGCTTCCTCAATATCCCCTTCCCTCCGCAG 119
Query 171 CGTCGTTTTCCGCTCCACGACTCCGGCGACTTCTCACCGTCGTTCAATGACGGTCCGATC 230
|||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGTCGTTTTCCGTTCCTCGATTCCGGCGACTTCTCACCGTCGTTCAATGACGGTCCGATC 179
Query 231 TAAGATTCGTGAAATTTTCATGCCGGCGTTATCATCAACCATGACGGAAGGCAAAATCGT 290
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 AAAGATTCGTGAAATTTTCATGCCGGCGTTATCATCAACCATGACGGAAGGTAAAATCGT 239
Query 291 GTCATGGATCAAAACAGAAGGCGAGAAACTCGCCAAGGGAGAGAGTGTTGTGGTTGTTGA 350
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 GTCCTGGATCAAAACGGAAGGCGAGAAACTCGCGAAGGGAGAGAGTGTTGTGGTTGTTGA 299
Query 351 ATCTGATAAAGCCGATATGGATGTAGAAACGTTTTACGATGGTTATCTTGCTGCGATTGT 410
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 300 ATCTGATAAAGCAGATATGGATGTTGAAACGTTTTACGATGGTTATCTTGCTGCAATTGT 359
Query 411 CGTCGGAGAAGGTGAAACAGCTCCGGTTGGTGCTGCGATTGGATTGTTAGCTGAGACTGA 470
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGTAGGAGAAGGTGAAACAGCTCCGGTTGGTGCTGCGATTGGATTGTTAGCTGAGACTGA 419
Query 471 AGCTGAGATCGAAGAAGCTAAGAGTAAAGCCGCTTCGAAATCTTCTTCTTCTGTGGCTGA 530
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 420 AGCTGAGATCGAAGAAGCTAAGACTAAAGCCGCTTCGAAATCTTCTTCTTCTGTGGTTGA 479
Query 531 GGCTGTCGTTCCATCTCCTCCTCCGGTTACTTCTTCTCCTGCTCCGGCGATTGCTCAACC 590
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 480 GGCTGTTGTTCCATCTCCTCCTCCGGTTACTTCATCTCCTGCTCCGGCGATTGCTCAAAC 539
Query 591 GGCTCCGGTGACGGCAGTATCAGATGGTCCGAGGAAGACTGTTGCGACGCCGTATGCTAA 650
||||||||||||||| ||| ||||||||||||||||||| || |||||||| ||||||||
Sbjct 540 GGCTCCGGTGACGGCTGTAGCAGATGGTCCGAGGAAGACCGTAGCGACGCCTTATGCTAA 599
Query 651 GAAGCTTGCTAAACAACACAAGGTTGATATTGAATCCGTTGCTGGAACTGGACCATTCGG 710
||||||||||||||| || ||||||||||||| |||| |||||||||||||||| || ||
Sbjct 600 GAAGCTTGCTAAACAGCATAAGGTTGATATTGGATCCATTGCTGGAACTGGACCGTTTGG 659
Query 711 TAGGATTACGGCTTCTGATGTGGAGACGGCGGCTGGAATTGCTCCGTCCAAATCCTCCAT 770
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 660 TAGGATTACGGCTTCTGACGTGGAAACGGCGGCTGGAATTGCTCCGTCTAAATCCTCCGT 719
Query 771 CGCACCACCGCCTCCTCCTCC-ACCTCCGGTGACGGCTAAAG---C-A--ACCACCACTA 823
|||||||||||||||||||| | |||||||| ||||||||| | | ||||||||||
Sbjct 720 GGCACCACCGCCTCCTCCTCCTA-CTCCGGTGGCGGCTAAAGCTACTACCACCACCACTA 778
Query 824 ATTTGCCTCCTCTGTTACCTGATTCAAGCATTGTTCCTTTCACAGCAATGCAATCTGCAG 883
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATTTGCCTCCTCTATTACCTGATTCAAGCATTGTTCCTTTCACAGCAATGCAATCTGCAG 838
Query 884 TATCTAAGAACATGATTGAGAGTCTCTCTGTTCCTACATTCCGTGTTGGTTATCCTGTGA 943
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TATCAAAGAACATGATTGAGAGTCTCTCTGTTCCTACATTCCGTGTTGGTTATCCTGTGA 898
Query 944 ACACTGACGCTCTTGATGCACTTTACGAGAAGGTGAAGCCAAAGGGTGTAACAATGACAG 1003
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 ACACTGATGCTCTTGATGCACTCTACGAGAAGGTGAAGCCAAAGGGTGTAACAATGACAG 958
Query 1004 CTTTATTAGCTAAAGCTGCAGGGATGGCCTTGGCTCAGCATCCTGTGGTGAACGCTAGCT 1063
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 959 CTTTATTGGCTAAAGCTGCAGGGATGGCTTTGGCTCAGCATCCTGTGGTGAACGCTAGCT 1018
Query 1064 GCAAAGACGGGAAGAGTTTTAGTTACAATAG-TAGCATTAACATTGCAGTGGCGGTTGCT 1122
||||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 1019 GCAAAGATGGGAAGAGTTTTAGTTACAAT-GCTAACATTAACATTGCAGTGGCGGTTGCT 1077
Query 1123 ATCAATGGTGGCCTGATTACGCCTGTTCTACAAGATGCAGATAAGTTGGATTTGTACTTG 1182
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATTAATGGCGGCTTGATTACGCCTGTTCTACAAGATGCAGATAAGTTGGATTTGTACTTG 1137
Query 1183 TTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAGCTAGAAGCAAGCAACTTCAACCCCAT 1242
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1138 TTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAGCCAGAAGCAAGCAACTTCAACCCCAT 1197
Query 1243 GAATACAACTCTGGAACTTTTACTTTATCGAATCTCGGTATGTTTGGAGTGGATAGATTT 1302
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 1198 GAATACAACTCTGGAACTTTCACTTTATCGAATCTTGGTATGTTTGGGGTGGATAGATTT 1257
Query 1303 GACGCTATTCTTCCGCCAGGACAGGGTGCTATTATGGCTGTTGGAGCGTCAAAGCCAACT 1362
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GATGCTATTCTTCCGCCAGGACAGGGTGCTATTATGGCTGTTGGAGCGTCAAAGCCAACT 1317
Query 1363 GTAGTTGCTGATAAGGATGGATTCTTCAGTGTAAAAAACACAATGCTGGTGAATGTGACT 1422
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1318 GTAGTTGCTGATAAGGATGGATTCTTCAGTGTAAAAAACACAATGCTAGTGAATGTGACT 1377
Query 1423 GCAGATCATCGCATTGTGTATGGAGCTGACTTGGCTGCTTTTCTCCAAACCTTTGCAAAG 1482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1378 GCAGATCATCGCATTGTGTATGGAGCTGACTTGGCTGCTTTTCTTCAAACCTTTGCAAAG 1437
Query 1483 ATCATTGAGAATCCAGATAGTTTGACCTTATAAGAC-GCCAAGCGAAGACGA 1533
||||| |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1438 ATCATCGAGAATCCAGATAGTTTGACCTTATAAGACAGCCAAGCGAACACGA 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64410604295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5