BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25870.1
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936276 jgi|Araly1|936276|scaffold_500467.1 612 2e-174
> Ahg936276 jgi|Araly1|936276|scaffold_500467.1
Length=562
Score = 612 bits (331), Expect = 2e-174
Identities = 479/548 (87%), Gaps = 20/548 (4%)
Strand=Plus/Plus
Query 98 GGTTCAGCTATGGAGGATTTATTGGAGGAGAGGCTAACTCGGACTGACTCTGTCGGGAAT 157
|||| |||||||| ||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 12 GGTTAAGCTATGGTGGATTTATTGGAGGAGAGGCTAACTGGGACTGACTCGGTCGGGAAG 71
Query 158 AAACGAGTCAGAGACGGGTTAGACCTCGACTCGCCGGACGTGAAGCGGTTAAGAGATGAT 217
|||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||
Sbjct 72 AAACGAGTCAGAGACGAGTTAGGTTTCGACTCGCCGGACGTGAAGCGGTTGAGAGATGAT 131
Query 218 TTGTTCGATGACTCGGGGCTTGACCCAGTGAGTCAAGATCTTGACTCGGTGATGAAGAGT 277
||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 132 TTGCTCGATGACTCGGGGTTTGACCCAGTGATTCAAGATCTTGACTCGGTGATGAAGAGT 191
Query 278 TTCGAGAATGAGTTATCGA-CAACGACGGCGGC-G-CTAAGCTC-CGGTGAAACTCAGCC 333
|||||| |||||||||||| || |||||||| | || | | |||||||||||||||
Sbjct 192 TTCGAGGATGAGTTATCGAACA-CGACGGCGAAAGGCTCCGGTGACGGTGAAACTCAGCC 250
Query 334 GGATCTTGGATACCTTTTCGAAGCTTCTGATGACGAGCTGGGTTTGCCACCGCCGCTTAC 393
||||||||| || ||||||||||||||||| |||||||| ||||| || || |||| |
Sbjct 251 GGATCTTGGGTATCTTTTCGAAGCTTCTGACGACGAGCTTGGTTTACCTCCACCGCCGCC 310
Query 394 GCCACCGCA-AACGCTTCTTCCTCCGTCGTGTGAGGAAACGG---------TGACGGAAT 443
| ||||| || | ||| |||||||||||||||||||| |||||||||
Sbjct 311 TCTACCGCTGAA---TA-TTCATCCGTCGTGTGAGGAAACGGAGGAGACGGTGACGGAAT 366
Query 444 TGGTACGAGCCTCGTCGGATTCATCAGAGGTTGGAGAGTTATGTGGGTTTGAGGATCATG 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TGGTACGAGCCTCGTCGGATTCATCAGAGGTTGGAGAGTTATGTGGGTTTGAGGATCATG 426
Query 504 TTACGGAGTTCGGACCTTGCGATCTTGGTGATGATGGGCTTTTCGAATATTTCGATGGGT 563
||||||| |||||| |||||||||| ||||||||||| ||||| || |||| ||||| ||
Sbjct 427 TTACGGATTTCGGATCTTGCGATCTGGGTGATGATGGACTTTTTGATTATTCCGATGTGT 486
Query 564 GTTTAGATTCCGGCGATTTGTTTTCATGGCGGCCGGAGTTTTTACCGGCGGAGTAA-CAA 622
|||||||||| || |||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 487 GTTTAGATTCTGGTGATTTGTTTTCATGACGGCCGGAGTATTTACCGGCGGAGTAAACAA 546
Query 623 CATACCGG 630
|| ||||
Sbjct 547 TATTCCGG 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35949910731
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5