BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25882.1
Length=534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936277 jgi|Araly1|936277|scaffold_500468.1 497 3e-140
> Ahg936277 jgi|Araly1|936277|scaffold_500468.1
Length=394
Score = 497 bits (269), Expect = 3e-140
Identities = 299/314 (95%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 117 ACGGTAACAGAGGGAAACCGTCGACGGAAGTTGTTCGGACGGTAACGGAGGAAGAGGTGG 176
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGGAAACAGAGAGAAACCGTCGACGGAAGTTGTTCGGACGGTAACGGAGGAAGAGGTGG 120
Query 177 ATGAGTTTTTCAAGATATTACGGAGAGTACACGTGGCGACACGAACGGTTGCGAAAGTTA 236
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 121 ATGAGTTTTTCAAGATATTACGGAGAGTACACGTGGCGACACGAACGGTAGCGAAAGCTA 180
Query 237 ACGGCGGTGTTGCTGAGGGAGAGTTACCGTCTAAGAAGAGGAAACGGAGTCAGAATCTTG 296
|||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 ACGGCGGTGTTGTTGAACGAGAGTTACCGTCAAAGAAGAGGAAACGGAGTCAGAATCTTG 240
Query 297 GGTTGAGAAACTCGTTGGATTGTAACGGCGTTCGAGACGGAGAATTCGATGAGATTAATC 356
|||||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 241 GGTTGAGAAATTCGTTGGATAGTAACGGCGTTCGAGACGGAGAACTCGATGGGATTAATC 300
Query 357 GGGTCGGGTTACAGGGTTTGGGTTTGGATCTGAACTGTAAACCGGAACCAGACAGCGTTA 416
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 301 GGGTCGGGTTACAGGGTTTGGGTTTGGATCTGAATTGTAAACCGGAACCAGACGGCGTTA 360
Query 417 GTTTATCGTTGTAG 430
|||| |||||||||
Sbjct 361 GTTTGTCGTTGTAG 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19459350390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5