BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25890.1
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936279 jgi|Araly1|936279|scaffold_500470.1 1528 0.0
Ahg936280 jgi|Araly1|936280|scaffold_500471.1 289 6e-77
> Ahg936279 jgi|Araly1|936279|scaffold_500470.1
Length=1060
Score = 1528 bits (827), Expect = 0.0
Identities = 994/1068 (93%), Gaps = 37/1068 (3%)
Strand=Plus/Plus
Query 358 CACACCAAGTGTTCGATAAAATGGCTGAACGAAAGAAACGCTCTTCTATTCAAACCAATA 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 CACACCAAGTGTTCGATAAAATGGCTGAACGAAAGAAACGCTCTTCTGTTCAAACCAATA 60
Query 418 AACCCAACAAAAAACCCATGAAGAAGAAACCTTTTCAGCTAAATCACCTCCCAGGTTTAT 477
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AACCCCACAAAAAACCCATGAAGAAGAAAACTTTTCAGCTAAATCACCTCCCAGGTTTAT 120
Query 478 CTGAAGATTTGAAGACTATGAGAAAACTCCGTTTCGTTGTGAATGATCCTTACGCTACTG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTGAAGATTTGAAGACTATGAGAAAACTCCGTTTCGTTGTGAATGATCCTTACGCTACTG 180
Query 538 ACTACTCATCAAGCGAAGAAGAAGAAAGGAGT-CAGAGAAGGAAACGTTATGTCTGTGAG 596
|||| ||||||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct 181 ACTATTCATCAAGCGAAGAAGATGAAAGG-GTTCAGAGAAGGAAACGTTATGTCTGTGAG 239
Query 597 ATCGATCTTCCTTTCGCTCAAGCTGCTACTCAAGCAGAATCTGAAAGCTCA-TATTGTCA 655
|| |||||||||||||||||||| |||||||||||||||||||||| |||| | ||||||
Sbjct 240 ATTGATCTTCCTTTCGCTCAAGCCGCTACTCAAGCAGAATCTGAAACCTCAGT-TTGTCA 298
Query 656 GGAGAGTAACAATAATGGTGTAAGCAAGA-CTAAAATCTCAGCTTGTAGCAAAAAGGTTT 714
|||||||| |||||||||| |||||| | | |||||||||||||||||||||||| |||
Sbjct 299 GGAGAGTAGTAATAATGGTGGAAGCAA-ATCCAAAATCTCAGCTTGTAGCAAAAAGATTT 357
Query 715 T-ACGCAGCAAAGCATCTCCGGTCGTTGGACGTTCTTCTACTACTGTCTCGAAGCCTGTT 773
| | ||||||||| || |||||||||||||||||||||| | |||||||||||||||
Sbjct 358 TGA-GCAGCAAAGTGTCGCCGGTCGTTGGACGTTCTTCTAGT---GTCTCGAAGCCTGTT 413
Query 774 GGTGTTAGGCAGAGGAAATGGGGTAAATGGGCTGCTGAGATTAGACATCCAATCACCAAA 833
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 414 GGTGTTAGGCAGAGGAAATGGGGTAAATGGGCTGCTGAGATTAGACATCCAATCACTAAA 473
Query 834 G-TAAGAACTTGGTTGGGTACTTACGAGACGCTTGAACAAGCAGCTGATGCTTATGCTAC 892
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 474 ACTA-GAACTTGGTTGGGTACTTACGAGACGCTTGAACAAGCAGCTAATGCTTATGCTGC 532
Query 893 CAAGAAGCTTGAGTTTGATGCTCTGGCTGCAGCCACTTCTGCTGCTTCCTCTGTTTTGTC 952
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 533 TAAGAAGCTTGAGTTTGATGCTTTGGCTGCAGCCACTTCTGCCGCTTCCTCTGTTTTGTC 592
Query 953 A-A---A--TGAGTCTGGTTCTATGATCTCAGC--C----TC-A--G--G--G-T----C 988
| | | |||||||||||||||||||||||| | || | | | | | |
Sbjct 593 AGATTCAAATGAGTCTGGTTCTATGATCTCAGCTTCAGGGTCTAATGTTGAAGCTGTGTC 652
Query 989 AAGCATTGATCTTGACAAGAAGCTAGTTGATTCGACTCTTGATCAACAAGCTGGTGAATC 1048
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 653 AAGCATTGATCTTGACAAGAAGCTAGTTGATTCGACCCTTGATCCGCAAGCTGGTGAATC 712
Query 1049 GAAGAAAGCGAGTTTTGATTTCGACTTTGCAGATCTACAGATTCCTGAAATGGGTTGCTT 1108
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 713 GAAGAAAGCGAGTTTTGATTTCGACTTTGCAGATCTACAGATTCCTGAATTGGGTTGCTT 772
Query 1109 CATTGATGACTCATTCATCCCAAATGCTTGTGAGCTTGATTTTCTCTTAACAGAAGAGAA 1168
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CATTGATGAGTCTTTAATCCCAAATGCTTGTGAGCTTGATTTTCTCTTAACAGAAGAGAA 832
Query 1169 CAACAACCAAATGTTGGATGATTACTGTGGCATAGATGATCTGGACATCATTGGTCTTGA 1228
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 833 CAACAACCAAATGTTGGATGATTACTGCGGCATAGATGATCTGGACATCATTGGTCTTGA 892
Query 1229 ATGTGACGGTCCAAGCGAACTTCCAGACTATGATTTCTCAGATGTGGAGATCGATCTTGG 1288
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 893 ATGTGACGGTCCAAGCGAACTTCCAGACTATGATTTCTCAGACGTGGAGATCAATCTTGG 952
Query 1289 TCTCATTGGAACCACCATTGACAAGTATGCTTTCGTTGATCATATCGCAACAACTACTCC 1348
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 953 TCTCATTGGAACCACCATTGACAAGTATGCATTCGTTGATCATATCGCAACAACTTCTAC 1012
Query 1349 CACTCCTCTTAATATCGCGTGCCCATAAGTTTTGCAGCTAGGTGTTAT 1396
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CACTCCTCTTAATATCGCGTGCCCATAAGTTTTGCAGCTAGGTGTTAT 1060
> Ahg936280 jgi|Araly1|936280|scaffold_500471.1
Length=192
Score = 289 bits (156), Expect = 6e-77
Identities = 181/193 (94%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 1477 ATCTCAAGGGAAGCAAAAACCCTAAAGATAGAAGCAGATGCAGTTTTGTGTGTTGGTGTT 1536
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 ATCTCAGGGGAAGCAATAACCCTAAAGATAGAAGCAGATGCAGTTTTGTGTGTTGGTGTT 133
Query 1537 ACTAAAGAAAGTTTTGTTGACATAATGGTTTTGATGTTGTGGAGAAGATAGAGAGGTGTG 1596
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 132 ACTAAAGAAAGTTTTGTTGACATAATGGTTTTGATGTTGTAAAGAAGATAGAGAGGTGAG 73
Query 1597 ATCGAAATTGTAAATCTCAGGTGGttttttttGAAGGCAATTGTTTCTCATTTAGG-Gtt 1655
||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 72 ATCGAAATTGTAATTCTCAGGTGGGGTTTTTTGAAGGCAATTGTTTCTCATTTAGGTGTT 13
Query 1656 tttttCTATATGA 1668
| || ||| ||||
Sbjct 12 TATT-CTAAATGA 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66848379975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5