BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25900.1
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484356 jgi|Araly1|484356|fgenesh2_kg.5__348__AT3G25900.1 1842 0.0
> Ahg484356 jgi|Araly1|484356|fgenesh2_kg.5__348__AT3G25900.1
Length=1275
Score = 1842 bits (997), Expect = 0.0
Identities = 1214/1312 (93%), Gaps = 41/1312 (3%)
Strand=Plus/Plus
Query 23 aaaaaaaaaCACAAAAGCGGCGTTGAtttttttAGATTTTCCGACAAGATTTCTCGTGAG 82
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AAAACAAAACACAAAAGCGGCGTTGATTTTTTTCGATTTTCCGACAAGATTTCTCGTGAG 60
Query 83 AAGATTTGTCTGAATCTTTCTTTCGAAGAGGTTTTGAGTTAA-TTTCAAAATGGTTTTGG 141
| | | | ||| | |||||||||||||||| ||||||||||| |||||
Sbjct 61 -A-A-------G-A------TTT-G-AGAGGTTTTGAGTTAATTTTCAAAATGGGTTTGG 102
Query 142 AGAAAAAATCTGCATTGTTGGAAGATTTGATAAAGAAATGCGGCGGTTGTGCGGTGGTCG 201
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 103 AGAAAAAATCTGCATTGTTGGAAGATTTAATAAAGAAATGCGGCGGTTGTGCGGTGGTCG 162
Query 202 ACGGTGGTTTCGCTACCCAGCTTGAGATTCACGGCGCCGCCATTAACGACCCTTTGTGGA 261
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 163 ACGGTGGTTTCGCTACCCAGCTTGAGATTCACGGCGCCGCTATTAATGACCCTTTGTGGA 222
Query 262 GTGCTGTTTCTCTCATCAAAAATCCTGAGCTCATCAAAAGGGTTCACATGGAATATTTGG 321
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 223 GTGCTGTTTCTCTCATCAAAAATCCTGAACTCATCAAAAGGGTTCACATGGAATATTTGG 282
Query 322 AAGCTGGTGCAGACATTGTGGTTACTTCATCTTATCAGGCTACGATCCCGGGGTTTCTTT 381
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 283 AAGCTGGTGCAGACATTGTGGTTACTTCATCTTATCAGGCTACTATCCCGGGGTTTCTTT 342
Query 382 CTAGAGGTTTATCAATAGAAGAGAGCGAGTCTTTGCTTCAAAAGAGTGTAGAATTAGCTG 441
| ||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 343 CGAGAGGTTTATCGATAGAAGAGAGCGAGTCTTTGCTACAAAAGAGTGTACAATTAGCTG 402
Query 442 TTGAAGCTCGTGATAGATTCTGGGAGAAAGTGAGCAAGGTTTCAGGACATAGCTATAACA 501
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 403 TTGAAGCTCGTGATAGATTCTGGGACAAAGTGAGCAAAGTTTCAGGACATAGCTATAACA 462
Query 502 GAGCTCTTGTAGCTGCATCTATTGGAAGCTATGGTGCTTATCTTGCTGATGGCTCTGAGT 561
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 463 GAGCTCTTGTAGCTGCATCTATTGGAAGTTATGGAGCTTATCTTGCTGATGGCTCTGAGT 522
Query 562 ACAGTGGTCACTATGGTGAGAATGTAAGTTTGGATAAACTAAAGGACTTTCACAGGAGAA 621
|||||||| ||||||||||| |||||||||||||||||||||| |||||||| |||||||
Sbjct 523 ACAGTGGTAACTATGGTGAGGATGTAAGTTTGGATAAACTAAAAGACTTTCATAGGAGAA 582
Query 622 GACTTCAAGTCTTAGTGGAAGCTGGTCCTGATCTTCTTGCTTTTGAAACCATACCGAATA 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 583 GACTTCAAGTCTTAGTGGAAGCTGGTCCTGATCTTCTTGCTTTTGAAACCATACCAAATA 642
Query 682 AACTCGAAGCTCAGGCTTGCGTTGAGCTTTTGGAGGAAGAGAAAGTGCAAATCCCAGCAT 741
||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 643 AACTCGAGGCTCAGGCGTGCGTTGAGCTTTTGGAAGAAGAGAAAGTGCAGATCCCAGCAT 702
Query 742 GGATCTGCTTCACATCTGTAGATGGTGAGAAAGCTCCATCAGGAGAGAGCTTTGAGGAAT 801
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GGATCTGTTTTACATCGGTAGATGGTGAGAAAGCTCCATCAGGAGAGAGCTTTGAGGAAT 762
Query 802 GTCTTGAACCTCTTAACAAAAGCAACAATATTTACGCAGTTGGTATTAACTGCGCACCTC 861
| || ||| ||||||||||||||||||||||||| || |||||||| |||||||| ||||
Sbjct 763 GCCTCGAAGCTCTTAACAAAAGCAACAATATTTATGCGGTTGGTATAAACTGCGCTCCTC 822
Query 862 CTCAATTCATCGAAAATCTGATTCGCAAATTCGCCAAGCTGACGAAGAAAGCAATCGTTG 921
|||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||
Sbjct 823 CTCAATTCATCGAAAATCTGATTCGCAAATTCGCCAAGTTGACCAAGAAGGCAATCGTTG 882
Query 922 TTTACCCGAATAGCGGAGAGGTTTGGGATGGAAAAGCTAAACAATGGCTGCCATCACAAT 981
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 883 TTTACCCGAATAGCGGAGAGGTTTGGGATGGAAAAGCGAAACAATGGCTGCCATCACAAT 942
Query 982 GCTTTGGTGATGATGAATTTGAGATGTTTGCAACGAAATGGCGTGACCTTGGAGCTAAAC 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GCTTTGGTGATGATGAATTTGAGATGTTTGCAACGAAATGGCGTGACCTTGGAGCTAAAC 1002
Query 1042 TCATCGGAGGATGTTGCAGGACTACACCTTCCACCATTAACGCTATCTCCAGAGATTTGA 1101
|||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1003 TCATAGGAGGATGTTGCAGGACTACACCTTCCACCATTAAAGCTATCTCCAAAGATTTGA 1062
Query 1102 AACGAAGATGATTTTTCTTCAGGGAGAAAAGACTGAAGATTCTTTTTCAACTTTTTAACT 1161
|| ||||||||||||||||| ||||||| | ||| ||||| ||||||
Sbjct 1063 AAAGAAGATGATTTTTCTTCTGGGAGAA-----T-----TTC------AACTTGTTAACT 1106
Query 1162 AGCTTGACCATTGTTAGGGCTA--TCTATCTGTTTTCTGTTGTTTTCTTGTTGTTCACGT 1219
|||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 1107 AGCTTGACCATTGTTAGGGCTACATTTATCTGTGTTCTGTTGTTTTCTTGTTGTTCACGT 1166
Query 1220 TTTCTTTGTGGTTTGATGATATGTATTCGTAAACTAGGCCTTGGGCGTTTTCAATGTAAT 1279
|| |||||| || |||| || |||| || |||||||||||||||| |||||||||||||
Sbjct 1167 TTCCTTTGTTGTCTGAT-AT--GTATCCGCAAACTAGGCCTTGGGCTTTTTCAATGTAAT 1223
Query 1280 GGCCCATAAAATATTTTCTTTATCAAAA-TTACCCGATTTGAATCTTTAATA 1330
|||||||||| | |||||||||| |||| ||||||||||| |||||||||||
Sbjct 1224 GGCCCATAAAGTGTTTTCTTTATAAAAAATTACCCGATTTAAATCTTTAATA 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5