BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25905.1 Length=604 Score E Sequences producing significant alignments: (Bits) Value Ahg484357 jgi|Araly1|484357|fgenesh2_kg.5__349__AT3G25905.1 824 0.0 > Ahg484357 jgi|Araly1|484357|fgenesh2_kg.5__349__AT3G25905.1 Length=583 Score = 824 bits (446), Expect = 0.0 Identities = 551/598 (92%), Gaps = 21/598 (4%) Strand=Plus/Plus Query 12 ctctctctctcAACTTCAGAAATAGTCATAGAAGATAGATCTAACCCAGAGAAGACAAGA 71 ||||||||||||||||||||||||||||||| || |||||||||||| || ||| Sbjct 1 CTCTCTCTCTCAACTTCAGAAATAGTCATAGGAGGTAGATCTAACCC-----AG---AGA 52 Query 72 CAGAAAGAAGAGATATAAAATCGATGATTAGGGTTTAATCAAGAAGACGACTTTAT-GTT 130 || |||||| ||| | |||||||||||||||||||||||||||||||||||||| ||| Sbjct 53 -AG--AGAAGACATACAGAATCGATGATTAGGGTTTAATCAAGAAGACGACTTTATGGTT 109 Query 131 AGGGTTTAGGTTTGGGATATGACTCATGCTCGAGAATGGAGAAGCTCTTTGACTACTACA 190 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 110 AGGGTTTAGGTTTGGGATATGACTCATGCTCGAGAATGGAGAAGCTCTTTGACTACTACT 169 Query 191 CTTCTAATGGTGATCTTGCTTTCTTATATGCTCCATCTCTTCTGTGTATATTCACGGGTA 250 |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| Sbjct 170 CTTCTAATGGTGATCTTGCTTTCTCCTCTACTCCATCTCTTCTGTGTATATTCACGGGTA 229 Query 251 GGGGCAATTCGGATATTTCCAGAAACTCCGGCTTCGGGTAAGAGACAAGAAGAAGATCTA 310 |||||||||||| ||||||||| |||||||||| ||| ||||||||||||||| |||| Sbjct 230 GGGGCAATTCGGGTATTTCCAGTAACTCCGGCTCCGGCTAAGAGACAAGAAGA---TCTA 286 Query 311 ATGAAGAAGTACTTCGGCGCCGGGAAATTTCCACCGGTGGATTCTTTTGTCGGTAAAGGG 370 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 287 GTGAAGAAGTACTTCGGCGCCGGGAAATTTCCACCGGTGGATTCTTTTGTCGGAAAAGGG 346 Query 371 ATCAGTGAGAGTAAAAGAATAGTACCAAGTTGTCCGGATCCTTTGCATAACTAGTAGAAG 430 |||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 347 ATCAGTGAGAGTAAGAGAATAGTACCAAGTTGTCCAGATCCTCTGCATAACTAGTAGAAG 406 Query 431 CAGTTTCTTGATGTGttttttttt--tttGG-TTTATATTTTTCTTCT-T-GTTTATGTT 485 |||||||||||||| ||||||||| ||| |||||||||| ||||| | ||||||||| Sbjct 407 CAGTTTCTTGATGTTTTTTTTTTTCATTTTTATTTATATTTT-CTTCTCTTGTTTATGTT 465 Query 486 AATGATCAACCAACTAGTGTATTTTACCCAAAATACCTACGTTTTTCTCGTTAATATAAG 545 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 466 AATGATCAATCAACTAGTGTATTTTACCCAAAATACCTACGTTTTTCTCGATAATATAAG 525 Query 546 GGAAAAACGAGGGTATTTTGGAGATTTTAATCACTGATCTATAACCATTTCATATATA 603 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 526 GGAAAAACGAGGGTATTTTGGATATTTTAATCACTGATCTATAACCTTTTCATATATA 583 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22073168943 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5