BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G25905.1

Length=604
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484357 jgi|Araly1|484357|fgenesh2_kg.5__349__AT3G25905.1          824    0.0  


> Ahg484357 jgi|Araly1|484357|fgenesh2_kg.5__349__AT3G25905.1
Length=583

 Score =  824 bits (446),  Expect = 0.0
 Identities = 551/598 (92%), Gaps = 21/598 (4%)
 Strand=Plus/Plus

Query  12   ctctctctctcAACTTCAGAAATAGTCATAGAAGATAGATCTAACCCAGAGAAGACAAGA  71
            ||||||||||||||||||||||||||||||| || ||||||||||||     ||   |||
Sbjct  1    CTCTCTCTCTCAACTTCAGAAATAGTCATAGGAGGTAGATCTAACCC-----AG---AGA  52

Query  72   CAGAAAGAAGAGATATAAAATCGATGATTAGGGTTTAATCAAGAAGACGACTTTAT-GTT  130
             ||  |||||| ||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct  53   -AG--AGAAGACATACAGAATCGATGATTAGGGTTTAATCAAGAAGACGACTTTATGGTT  109

Query  131  AGGGTTTAGGTTTGGGATATGACTCATGCTCGAGAATGGAGAAGCTCTTTGACTACTACA  190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  110  AGGGTTTAGGTTTGGGATATGACTCATGCTCGAGAATGGAGAAGCTCTTTGACTACTACT  169

Query  191  CTTCTAATGGTGATCTTGCTTTCTTATATGCTCCATCTCTTCTGTGTATATTCACGGGTA  250
            ||||||||||||||||||||||||  | | ||||||||||||||||||||||||||||||
Sbjct  170  CTTCTAATGGTGATCTTGCTTTCTCCTCTACTCCATCTCTTCTGTGTATATTCACGGGTA  229

Query  251  GGGGCAATTCGGATATTTCCAGAAACTCCGGCTTCGGGTAAGAGACAAGAAGAAGATCTA  310
            |||||||||||| ||||||||| |||||||||| ||| |||||||||||||||   ||||
Sbjct  230  GGGGCAATTCGGGTATTTCCAGTAACTCCGGCTCCGGCTAAGAGACAAGAAGA---TCTA  286

Query  311  ATGAAGAAGTACTTCGGCGCCGGGAAATTTCCACCGGTGGATTCTTTTGTCGGTAAAGGG  370
             |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  287  GTGAAGAAGTACTTCGGCGCCGGGAAATTTCCACCGGTGGATTCTTTTGTCGGAAAAGGG  346

Query  371  ATCAGTGAGAGTAAAAGAATAGTACCAAGTTGTCCGGATCCTTTGCATAACTAGTAGAAG  430
            |||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct  347  ATCAGTGAGAGTAAGAGAATAGTACCAAGTTGTCCAGATCCTCTGCATAACTAGTAGAAG  406

Query  431  CAGTTTCTTGATGTGttttttttt--tttGG-TTTATATTTTTCTTCT-T-GTTTATGTT  485
            |||||||||||||| |||||||||  |||   |||||||||| ||||| | |||||||||
Sbjct  407  CAGTTTCTTGATGTTTTTTTTTTTCATTTTTATTTATATTTT-CTTCTCTTGTTTATGTT  465

Query  486  AATGATCAACCAACTAGTGTATTTTACCCAAAATACCTACGTTTTTCTCGTTAATATAAG  545
            ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  466  AATGATCAATCAACTAGTGTATTTTACCCAAAATACCTACGTTTTTCTCGATAATATAAG  525

Query  546  GGAAAAACGAGGGTATTTTGGAGATTTTAATCACTGATCTATAACCATTTCATATATA  603
            |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct  526  GGAAAAACGAGGGTATTTTGGATATTTTAATCACTGATCTATAACCTTTTCATATATA  583



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22073168943


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5