BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25910.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936283 jgi|Araly1|936283|scaffold_500474.1 1493 0.0
> Ahg936283 jgi|Araly1|936283|scaffold_500474.1
Length=1174
Score = 1493 bits (808), Expect = 0.0
Identities = 1041/1150 (91%), Gaps = 30/1150 (3%)
Strand=Plus/Plus
Query 202 TTGTTACTAGTTCCAAAACATGCCGAAAGAGAGGAAAGAACGGTCCGTATCTCTTGATAA 261
||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2 TTGTTGTTAGTTCTAGAACATGCCGAAAGAGAGGAAAGAACGGTCGGTATCTCTTGATAA 61
Query 262 GTATAAACGATCGCCACTGTGTTGTGAGGCAAGCCT-TGCTTTGAAGCCGAGTGAGAAAC 320
||||| |||||||||||||||| ||||| |||| || |||||||||||||||||||||||
Sbjct 62 GTATAGACGATCGCCACTGTGTAGTGAGTCAAG-CTGTGCTTTGAAGCCGAGTGAGAAAC 120
Query 321 AAGTTAAGGAATGGGAAGAGGCTCGTTGTCCTGTTTGTATGGAACATCCTCACAATGGGA 380
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 AAGTTAAGGAATGGGAAGAGGCTCGTTGTCCCGTTTGTATGGAACATCCTCACAATGGGA 180
Query 381 TTCTTCTCATTTGTTCTTCTTATGAAAATGGTTGTCGACCTTACATGTGCGACACTAGCC 440
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 TTCTTCTCATTTGTTCTTCTTATGAAAACGGTTGTCGACCTTACATGTGCGACACTAGCC 240
Query 441 ATCGGCATTCTAACTGTTTCGATCAGTTCCGCAAAGCTTCTAAAGAGAAACCTTCTTTGT 500
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 ATCGGCATTCTAACTGTTTCGATCAGTTCCGCAAAGCTTCTAAAGAGAAACCGTCTTTGT 300
Query 501 CTTTACTTCGTGAGGAAGAGGAAAGTAATGAACCAACTGAGATGGAAGATGTGGATTCAG 560
||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 301 CTTTACTTCATGAGGAAGAGGAAAGTAATGAACCAACTGAGATGGAAGATGTAGCTTCTG 360
Query 561 ACTCAACTGCTGTAAATCTATTAGGAGAAGCTGCATCTGAGATAACAGTTGTG-GATTTA 619
|||||||||||||||||||| ||||||||||||||||||| |||||| |||| | ||||
Sbjct 361 ACTCAACTGCTGTAAATCTAAGAGGAGAAGCTGCATCTGAGTTAACAGATGTGAG-TTTA 419
Query 620 AGTGATGGTgagagaggagaagaagaagtagaagaaga-agaagaagaagtagtagtaga 678
|| || |||||||||||||||||||||| ||||| || ||| || |||| || |||||
Sbjct 420 AGAGAAGGTGAGAGAGGAGAAGAAGAAGAAGAAGGTGAGAGAGGA-GAAGAAGAAGTAGT 478
Query 679 agaagaagaagaaggaattgtaacaacagaagaagatcaagaaaaaaacaaaccacaaaa 738
||||||||||| | ||||||| ||||||| ||||| ||||||||||||||||| | ||
Sbjct 479 AGAAGAAGAAG--G-AATTGTAGCAACAGAGGAAGACCAAGAAAAAAACAAACCGCCGAA 535
Query 739 gCTTACTTGTCCGTTATGTCGTGGACATATAAAAGAATGGGTAGTTGTTAAAGCAGCTCG 798
||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 536 GCTTACTTGCCCGTTATGCCGTGGACATATAAAAGAATGGGTAGTTGTTGAAGCAGCTCG 595
Query 799 ATGTTTCATGAACTCAAAACATAGAAGCTGTTCTTGTGAGACTTGTGATTTCAGTGGAAG 858
|| |||||||||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 596 ATATTTCATGAACTCAAAACATAGAAGCTGTTCGTCCGAGACTTGTGATTTCAGCGGAAC 655
Query 859 CTATTCCGATCTGAGAAAGCACGCAAGGCTTCTACATCCAGGAGTTAGGCCATCAGAAGC 918
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 656 CTATTCCGATTTGAGAAAGCACGCAAGGCTTCTGCATCCAGGAGTTAGGCCATCAGAAGC 715
Query 919 AGATCCAGAGAGACAGAGAAGCTGGAGGAGGCTAGAAAGGCAGAGCGATTTAGGGGATTT 978
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 716 AGATCCAGAGAGACAGAGAAGCTGGAGGAGGCTAGAAAGGCAGAGAGATTTAGGGGATTT 775
Query 979 ACTTAGCACACTCCAAT-CTTCTTTTGGAGGAGATGAAATAAGTAACGATGATGGGTTTC 1037
| ||||||||||| ||| |||||||||||||||| |||| ||||||||| ||||| |||
Sbjct 776 AATTAGCACACTC-AATTCTTCTTTTGGAGGAGAAGAAAGAAGTAACGACAATGGGATTC 834
Query 1038 TATTTGCTGATACTCGCTTGCTTACAGTG-TACTTTCTCATCCGCGTGTTTAGACCAGAA 1096
|||||| || || |||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 835 TATTTGATGGTA---GCTTGCTTACAGTGAT-CTTTCTCATCCGCGTGTTTAGACCTGAG 890
Query 1097 TCGAGTGGCTCAAGGAGTAGTAG------CTGGTCTGGTACATCTAGAGCTAGGACACAT 1150
||||||||||||||||||||||| |||||||||| |||||||||||||| ||||
Sbjct 891 TCGAGTGGCTCAAGGAGTAGTAGTAGTAGCTGGTCTGGTGCATCTAGAGCTAGGTCACAG 950
Query 1151 ACAAGTGGGAGAAGAAGATCTTCA-AGACCTGCAAGTCTTTGGGGAGAGAGCTATGAAGG 1209
| | ||||||||||||| | || ||| || || | |||||||||||||||||||||||
Sbjct 951 ATAGGTGGGAGAAGAAGGCCA-CATAGATCTCCAGGGCTTTGGGGAGAGAGCTATGAAGG 1009
Query 1210 TAATACAGGAACATCACCTAGAGATGAGGAGAATAAT---CAATCTTCTGATGAACAAGT 1266
|||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 1010 TAATACAGGAACATCATCTAGAGATGAGGAGAATAATATTCAGTCTTCTGATGAACAAGA 1069
Query 1267 GTCTGGAACTCGGAGACG---TCGTTCTAGAAGAAGAACTGTCATTGATGATGATGATGA 1323
||||| |||||||||||| ||||||||| |||||| || ||||||||||||| |||||
Sbjct 1070 GTCTGTAACTCGGAGACGACGTCGTTCTAGGAGAAGAGCTATCATTGATGATGACGATGA 1129
Query 1324 AGAAGAAGAA 1333
|| || |||
Sbjct 1130 TGATGATGAA 1139
Score = 63.9 bits (34), Expect = 3e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1310 GATGATGATGATGAAGAAGAAGAACCGTGATGCT 1343
||||||||||||||||||||||||||||||||||
Sbjct 1125 GATGATGATGATGAAGAAGAAGAACCGTGATGCT 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5