BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25920.1
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484358 jgi|Araly1|484358|fgenesh2_kg.5__350__AT3G25920.1 1389 0.0
> Ahg484358 jgi|Araly1|484358|fgenesh2_kg.5__350__AT3G25920.1
Length=972
Score = 1389 bits (752), Expect = 0.0
Identities = 855/904 (95%), Gaps = 9/904 (1%)
Strand=Plus/Plus
Query 35 CCTTATCCTTGAAGCTTTGTTTCATCTGTTGTTCCCTGTGACCATGGCTACTCCACTCTC 94
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 19 CCTTATCCTTGAAGCTTT-TTTCATCTGTTGTTCCCTGTGACCATGGCTGCTCCACTGTC 77
Query 95 AATCTCATCAAATCCTCTCACCTCCCGCCATTGTTACCGTCTCCACTTAT-CTTCTACTT 153
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 78 AATCTCATCAAATCCTCTCACCTCCCGCCATTGTTACCGTCTCCACTT-TCCTTCTACTT 136
Query 154 CATTCAAGGGAAATGTAAGTGTTTTGGGGGCAAACCCAAGTCAGATTCTATCTCTGAAAC 213
| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 137 CGTTCAAGGGAAATGTAAGCGTTTTGGGAGCAAACCCAAGTCAGATTCTGTCTCTGAAAC 196
Query 214 TCAACCAAACCCTTAAAACGAGAAACCAACAGCAATTTGCGAGACCCCTTGTTGTGGTTA 273
||||||||| |||||||||||||| ||||| |||| || |||||| ||||||||||| |
Sbjct 197 TCAACCAAAAGCTTAAAACGAGAAATCAACAACAATCTGTGAGACCACTTGTTGTGGTCA 256
Query 274 GCCAAACGGCGGCTACGTCGTCGGCAGTTGTAGCTCCGGAGAGATTCCGTTTGGATAATC 333
||||| | |||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 257 GCCAAGCAGCGG---CGACGTCGGAAGTTGTAGCTCCGGAGAGATTCCGTTTGGATAATC 313
Query 334 TTGGACCACAGCCAGGTTCGAGGAAGAAGCAGAAGAGAAAAGGTAGAGGTATCTCTGCAG 393
|||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||
Sbjct 314 TTGGACCACAACCAGGTTCGAGAAAGAGGCAGAAGAGAAAAGGTAGAGGTATATCTGCAG 373
Query 394 GACAAGGAGCAAGTTGTGGTTTTGGTATGAGAGGTCAGAAATCAAGATCGGGTCCTGGGA 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 GACAAGGAGCAAGTTGTGGTTTTGGTATGAGAGGTCAGAAATCAAGATCGGGTCCTGGGA 433
Query 454 TTATGAGAGGCTTTGAAGGTGGTCAAACTGCTCTTTATCGTCGTCTTCCCAAACTTAGAG 513
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TTATGAGAGGCTTTGAAGGAGGTCAAACTGCTCTTTATCGTCGTCTTCCCAAACTTAGAG 493
Query 514 GAATCGCTGGAGGTATGCGTTCAGGATTACCTAAATACTTACCGGTTAATATCAAAGACA 573
||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 494 GAATCGCCGGAGGTATGCGTTCAGGATTACCCAAATACTTACCGGTTAATCTTAAAGACA 553
Query 574 TAGAAACAGCTGGGTTTCAAGAGGGAGATGAAGTGTCATTGGAGACATTGAAGCAAAAGG 633
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TCGAAACAGCTGGGTTTCAGGAGGGAGATGAAGTGTCATTGGAGACATTGAAGCAAAAGG 613
Query 634 GTTTGATTAATCCTTCAGGGAGAGAAAGGAAACTCCCTCTTAAGATTCTGGGTACAGGAG 693
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 614 GTTTGATCAATCCTTCAGGGAGGGAAAGGAAACTCCCTCTAAAGATTCTGGGTACCGGAG 673
Query 694 AACTAAGCATGAAGCTCACCTTCAAAGCTCGTGCCTTCTCAACACAAGCAAAAGAGAAGC 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AACTAAGCATGAAGCTCACCTTCAAAGCTCGTGCCTTCTCAACACAAGCAAAAGAGAAGC 733
Query 754 TTGAAGCTTCAGGTTGTACACTCACTGTGTTGCCGGGAAGAAAGAAATGGGTTAAGCCAT 813
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 734 TTGAAGCTTCAGGATGTACACTCACTGTTTTGCCCGGAAGAAAGAAATGGGTTAAGCCAT 793
Query 814 CTGTTGCAAAGAACCAAGCACGAGCAGATGAATACTTTGCCAAGAAGAGAGCTGCAGCAG 873
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 794 CGGTTGCAAAGAACCAAGCACGAGCAGACGAATACTTTGCCAAGAAGAGAGCTGCAGCAG 853
Query 874 CAGAAGCAGCAACTTCAGAGCCAGCAGCCTCTGCTTAAATTACTTCAGTTTCAAGCTCTT 933
|||||||| | |||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 854 CAGAAGCA--A-CTTCAGAGCCAGCAGCTTCTGCTTAAATTACTTCATTTTCAAGCTCTT 910
Query 934 TTTA 937
||||
Sbjct 911 TTTA 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41897085783
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5