BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G25930.1

Length=734
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg322734 jgi|Araly1|322734|fgenesh1_pm.C_scaffold_5000278           671    0.0  


> Ahg322734 jgi|Araly1|322734|fgenesh1_pm.C_scaffold_5000278
Length=471

 Score =  671 bits (363),  Expect = 0.0
 Identities = 436/471 (93%), Gaps = 6/471 (1%)
 Strand=Plus/Plus

Query  83   atgaagaaTGTTATGCTGATTATTGACGAGAGCAACGCAAGTTATGATTTACTCATTTGG  142
            ||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||||||
Sbjct  1    ATGAAGAATGTTATGGTGATTATTGACGAGAGTAATTCAAGTTATGATTTACTCATTTGG  60

Query  143  GCACTTGAAAACCAAAAAGATACCATTGAGAGCTCCAAAGTTTATATCTTTGCAAAACAG  202
            || ||||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct  61   GCCCTTGAAAACCAGAAAGATACCATTGAGAGCTCCAAAGTTTTTCTCTTTGCAACACAG  120

Query  203  CCACAAAATTCCTTTACTCCTCCTACCGTACTTTCTTCATCAGTCGGCTTTGCTCAAATT  262
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  121  CCACAAAATTCCTTCACTCCTCCTACCGTACTTTCTTCATCAGTCGGTTTTGCTCAAATT  180

Query  263  TTCTATCCATTTTCACCTAATTCAGAACTCATAAGATTGGCTCAAGAAAAGAATATGAAA  322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTCTATCCATTTTCACCTAATTCAGAACTCATAAGATTGGCTCAAGAAAAGAATATGAAA  240

Query  323  ATTGCTTTGGGTATATTAGAGAAAGCCAAGAAGATATGTTTAAATCATGGGATCAAGGCA  382
            |||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct  241  ATTGCTTTGGGTATATTAGAGAAAGCCAAGGAGATATGTTTAAATCATGGGATTAAAGCA  300

Query  383  GAGACATTTACTGATGATGGAGACCCTAAAGATCTAATCCGCAAGATAATTCAAGAACGA  442
            ||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||| | |
Sbjct  301  GAGACGTTTACAGATGTTGGAGATCCTAAAGATCTAATCCGCAAGATAATTCAAGATCAA  360

Query  443  AATATCAATTTAATAGTTACGAGCGATCAACAAAGTC----TC--AAAAAGTGTACACAA  496
            |||||| ||||||||||||||| ||||||||||| ||    ||  |||||||||||||  
Sbjct  361  AATATCCATTTAATAGTTACGAACGATCAACAAACTCAAAATCTCAAAAAGTGTACACGT  420

Query  497  AATACAGATTGTTCTCTTCTTGTCGTGAAGAAAAGACTTCGCAAAGATTAA  547
            |||||||||||||||||||||||||||| ||||| |||  |||||||||||
Sbjct  421  AATACAGATTGTTCTCTTCTTGTCGTGACGAAAACACTAAGCAAAGATTAA  471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27029148153


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5