BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G25940.1

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg346954 jgi|Araly1|346954|fgenesh1_pg.C_scaffold_5000346           499    8e-141


> Ahg346954 jgi|Araly1|346954|fgenesh1_pg.C_scaffold_5000346
Length=360

 Score =  499 bits (270),  Expect = 8e-141
 Identities = 333/363 (92%), Gaps = 6/363 (2%)
 Strand=Plus/Plus

Query  81   ATGGAGAAATCTAGAGAAAGCGAG-TTCTTGTTCTGTAATTTGTGTGGGACTATGCTTGT  139
            |||||||||||| ||||||| | | |||||||||||||| | ||||||||| ||||||||
Sbjct  1    ATGGAGAAATCTCGAGAAAGTG-GTTTCTTGTTCTGTAACTGGTGTGGGACGATGCTTGT  59

Query  140  CTTGAAATCAACCAAGTATGCAGAATGTCCACAT-TGCAAAACAAC-ACGGAATGCAAAA  197
            |||||||||||| ||||||||||| ||||||  | || |||||||| | | |||||||||
Sbjct  60   CTTGAAATCAACTAAGTATGCAGAGTGTCCA-TTATGTAAAACAACGA-GAAATGCAAAA  117

Query  198  GATATCATCGACAAGGAAATAGCTTACACAGTTTCTGCTGAGGATATCAGAAGAGAACTA  257
            || || ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct  118  GAGATTATCAACAAGGAAATAGCTTACACAGTTACTGCTGAGGATATCAGAAGAGAATTA  177

Query  258  GGAATATCATTGTTTGGTGAAAAAACGCAGGCAGAAGCTGAGCTACCAAAGATCAAAAAG  317
            ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct  178  GGAATATCATTGTTTGGTGAAAAAACGCAGGAAGAGGCTGAGCTACCAAAGATCAAAAAG  237

Query  318  GCATGCGAGAAATGCCAGCATCCTGAGCTTGTATACACAACCAGACAGACGAGATCAGCT  377
            || ||||||||||||||||| || ||||||||||| || |||||||||||||||||||| 
Sbjct  238  GCGTGCGAGAAATGCCAGCACCCGGAGCTTGTATATACGACCAGACAGACGAGATCAGCG  297

Query  378  GATGAAGGACAGACAACATATTACACTTGCCCCAATTGTGCTCATAGATTCACAGAAGGT  437
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  GACGAAGGACAGACAACATATTACACTTGCCCCAATTGTGCTCATAGATTCACAGAAGGT  357

Query  438  TGA  440
            |||
Sbjct  358  TGA  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21596063374


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5