BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25950.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936287 jgi|Araly1|936287|scaffold_500478.1 1029 0.0
> Ahg936287 jgi|Araly1|936287|scaffold_500478.1
Length=793
Score = 1029 bits (557), Expect = 0.0
Identities = 713/788 (90%), Gaps = 12/788 (2%)
Strand=Plus/Plus
Query 237 AGTTTCAAAACAAGAACCATGGAAACGGCGTCGTTTAATCCTTCGTCTTTTCTGGCTACT 296
|||||| |||| |||||||||||||| | | |||| | |||||| |||| || ||| |||
Sbjct 4 AGTTTCGAAAC-AGAACCATGGAAAC-G-G-CGTTGAGTCCTTCTTCTTCTCCGGCGACT 59
Query 297 -TTCCCGTCGTTTCTCCTCCTCTTCCTCGCCGTATACACCATCGGCTATTTCC-TAGTTT 354
|| |||||||| ||||||||||||||| |||||||| | |||| ||||||| || | |
Sbjct 60 CTT-CCGTCGTTCCTCCTCCTCTTCCTCTTCGTATACATCGTCGGATATTTCCTTA-TCT 117
Query 355 TCCGTACATGGAAA-CAATCATCACATTTAGGCGCTAGCTGCTTAATGTCACTCTTCCAC 413
||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 118 TCCGTTCATGGAAATC-ATCATCACACTTAGGCGCTAGCTGCTTAATGTCACTCTTCCAC 176
Query 414 GGCACTCCCGCCGTTATAATGGCTTCCCACGCGCTGCTCACAACTCCACGCGCCGACGTA 473
|||||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||||
Sbjct 177 GGCACTCCCGCCGTTATAATGGCTTCTCACGCGCTACTCACAACTACACGCGCCTCCGTA 236
Query 474 CACTCATTCGCTTCTCCCAATACCGCCGTGGAATCAAACGTACTCGACTTCAGCATGGCT 533
| ||| |||||||||||||| || ||||||||||||| ||||||||| ||||||||||||
Sbjct 237 CCCTCCTTCGCTTCTCCCAACACTGCCGTGGAATCAACCGTACTCGATTTCAGCATGGCT 296
Query 534 TATTTCACCGTTGATCTTCTCCATTACTTAATCTTCCTCCCTAACGACTTCATCTTCATC 593
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 297 TATTTCACCGTTGATCTCCTCCATTACCTAATCTTCCTCCCTAACGACTTCATCTTCATC 356
Query 594 CTCCACCACATTGCGACCCTATACGTTTTCGCCACGTGTAGATTCGCCGTCGGTCACGGA 653
||||||||||||||||| |||||||||||||| |||||| ||||| | ||||||||||||
Sbjct 357 CTCCACCACATTGCGACGCTATACGTTTTCGCTACGTGTCGATTCTCTGTCGGTCACGGA 416
Query 654 GCTCACGGGCTTCTCCTCCTCTTGATACTCGCGGAGGCGACGAGCGCGTGTCAGAACGTC 713
||||||| ||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 417 GCTCACGCGCTTCTCATTCTCTTGATCCTCGCGGAGGCGACGAGCGCGTGTCAGAACGTG 476
Query 714 TGGACGATCACCGGGTATAGAAAAAACGACGTCGCGTTAGCGAGGAGAGTGAGAGAGCTT 773
||||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||| ||
Sbjct 477 TGGACGATCGCCGGGTATAGAAAACACGACGTCGTTTTAGCGAAGAGAGTGAGAGAGGTT 536
Query 774 TTGTCTCCGCCGTTTTATCTT-TTTTATACTGTGGTTCGTGGATTGGCTGGTCCGGTGGT 832
||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 537 TTGTCTCCGCCGTTTTA-CTTGTTTTACACTGTGGTTCGTGGTTTGGCTGGTCCGGTGGC 595
Query 833 TTTGTATGATATGGCGACGTTTTACGGTAGCGGTGCGGCGGATGGAGTGGTTCCACGGTG 892
|||||||||||||||| ||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 596 TTTGTATGATATGGCGGCGTTTTACGGTAGTGGTGCGGCGGGGGGAGTTATTCCACGGTG 655
Query 893 GGCTTGGTTATCGTGGCTTGTTGTGATTGGGTTTGCTATTTTGGTTAGTATTTTGTGGGT 952
|||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 656 GGCTTGGTTATCGTGGCTTGTTGTGATTGGTTTTGCTATTTTTGTTAGTGTTTTGTGGGT 715
Query 953 TTTACGTAATTGGCTTGATTGGTTTAGGGAGAATAACTCTAGCAAGAAATACAAGTGAAT 1012
||||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 716 TTTACGTAATTGGGTTGATTGGTTTAGAGAGAAAAACTCTAGCAAGAAATATAAGTGAAC 775
Query 1013 TGTTTAAT 1020
|| |||||
Sbjct 776 TGATTAAT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5