BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25970.1
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896454 jgi|Araly1|896454|Al_scaffold_0005_420 2734 0.0
> Ahg896454 jgi|Araly1|896454|Al_scaffold_0005_420
Length=1959
Score = 2734 bits (1480), Expect = 0.0
Identities = 1787/1937 (92%), Gaps = 14/1937 (1%)
Strand=Plus/Plus
Query 168 GTTGTTCGATGAAATGCCTAAGAGAGATTCCGTGTCTTGGAACACAATGATTTCTGGGTA 227
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 6 GTTGTTCGATGAAATGCCTCAGAGAGATTCCGTGTCTTGGAACACGATGATTTCTGGATA 65
Query 228 CACAAGCTGTGGGAAATTGGAGGATGCATGGTGTTTATTTACATG-TATGAAGAGATCTG 286
|||||||||||||||||||||| || |||||||||| |||||| | ||||||||||| ||
Sbjct 66 CACAAGCTGTGGGAAATTGGAGAATTCATGGTGTTTGTTTACA-GATATGAAGAGATGTG 124
Query 287 GATCTGATGTTGATGGGTATAGTTTTAGTAGGTTGTTGAAAGGGATTGCTTCTGTGAAAA 346
||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 125 GATGTTATGTTGATGGGTATAGTTTTAGTAGGTTATTGAAAGGGATTGCTTCTGCGAAAA 184
Query 347 GGTTCGATCTTGGAGAGCAAGTGCATGGTTTGGTTATAAAGGGAGGTTATGAGTGTAATG 406
||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 185 GGTTCGATCTTGGGGAGCAAGTACATGGTTTGGTTGTAAAGGGAGGTTATGAGTGTAATG 244
Query 407 TGTATGTTGGAAGTTCGCTTGTTGATATGTATGCGAAATGTGAAAGAGTTGAAGATGCTT 466
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 245 TGTATGTTGGAAGTTCGCTTGTTGATATGTACGCGAAATGTGAAAGAGTTGAAGATGCTT 304
Query 467 TTGAGGCTTTTAAGGAGATTTCAGAGCCTAACTCTGTTTCATGGAATGCTTTGATTGCTG 526
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 305 TTGGGGCTTTTATGGAGATTTTAGAGCCTAACTCTGTTTCATGGAATGCTTTGATTGCTG 364
Query 527 GATTTGTGCAAGTGCGAGATATCAAGACTGCTTTTTGGTTGTTGGGTTTGATGGAGATGA 586
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 365 GATTTGTGCAAGTTCGAGATATCGAGACTGCTTTTTGGTTGTTGGGTTTGATGGAGATGA 424
Query 587 AAGCTGCTGTGACTATGGATGCTGGCACTTTCGCTCCACTTCTTACTTTGCTTGATGATC 646
||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 425 AAGCTGCTGTGACTATGGACGATGGCACTTTTGCTCCACTTCTTACTTTGCTTGATGATC 484
Query 647 CTATGTTTTGTAACTTGTTAAAGCAAGTTCATGCTAAGGTTTTGAAACTCGGGCTTCAAC 706
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 485 CGATGTTTTGTAACTTGTTGAAGCAAGTTCATGCTAAGGTTTTGAAACTCGGGCTTGAAC 544
Query 707 ACGAGATCACTATATGCAATGCGATGATCAGCTCTTATGCAGATTGTGGGTCAGTATCAG 766
| ||||| ||||||||||||||||||||||||||||| ||| ||||||| | |||||| |
Sbjct 545 ATGAGATTACTATATGCAATGCGATGATCAGCTCTTACGCAAATTGTGGTTTAGTATCCG 604
Query 767 ATGCAAAGAGAGTTTTTGATGGCTTGGGTGGCTCAAAAGACTTGATTTCGTGGAATTCGA 826
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 ATGCGAAGAGAGTTTTTGATGGCTTGGGTGGCTCAAAAGACTTGATTTCGTGGAATTCGA 664
Query 827 TGATTGCAGGTTTCTCTAAACATGAGCTAAAGGAATCTGCTTTTGAACTGTTTATTCAAA 886
|||| |||||||| |||||||| |||| ||||||||||||||||||||| |||| | |||
Sbjct 665 TGATCGCAGGTTTATCTAAACACGAGCAAAAGGAATCTGCTTTTGAACTATTTACTGAAA 724
Query 887 TGCAAAG-ACATTGGGTCGAAACCGACATTTATACTTACACCGGCTT-GTTAAGCGCTTG 944
|||| || | ||||| ||||||| ||||||||||||||||||||| | || ||| |||||
Sbjct 725 TGCATAGGA-ATTGGATCGAAACTGACATTTATACTTACACCGGCATCGT-AAGTGCTTG 782
Query 945 CTCTGGCGAAGAACATCAAATTTTTGGGAAGTCTTTGCATGGTATGGTAATAAAGAAGGG 1004
|||||||||||||||||| | |||||| ||||||||||||||| |||| |||||||||||
Sbjct 783 CTCTGGCGAAGAACATCAGAGTTTTGGAAAGTCTTTGCATGGTTTGGTGATAAAGAAGGG 842
Query 1005 ATTGGAACAAGTAACTTCTGCAACAAATGCATTGATCTCTATGTATATTCAGTTTCCTAC 1064
|||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 843 ATTGGAGCAAGTTACTTCTGTTTCAAATGCATTGATCTCTATGTATATTCAGTTTCCTAC 902
Query 1065 AGGCACCATGGAAGATGCTCTGTCTCTATTTGAATCCTTAAAATCTAAGGATCTTATCTC 1124
|||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 903 AGGCGTCATGAAAGATGCTCTGTCTCTATTTGAATCCTTAAAACCTAAGGATCTTGTCTC 962
Query 1125 TTGGAATTCGATCATTACAGGGTTCGCCCAGAAGGGTCTCAGCGAGGATGCGGTAAAGTT 1184
|||||||||||| || ||||||||| |||| || ||||||||||||||||| ||||||||
Sbjct 963 TTGGAATTCGATTATGACAGGGTTCTCCCAAAATGGTCTCAGCGAGGATGCAGTAAAGTT 1022
Query 1185 CTTTAGCTACTTAAGATCCTCAGAGATAAAAGTCGACGATTACGCCTTCTCTGCACTTCT 1244
|||| ||||||||||||| ||| | ||| |||||||||||||||||||||||||| ||||
Sbjct 1023 CTTTCGCTACTTAAGATCTTCAAACATAGAAGTCGACGATTACGCCTTCTCTGCAGTTCT 1082
Query 1245 CAGATCATGCTCGGACCTAGCAACACTCCAATTAGGTCAGCAGA-TCCACGCGCTCGCCA 1303
|||||||||||||||||||||||||||||| ||||||||||||| || |||| || ||||
Sbjct 1083 CAGATCATGCTCGGACCTAGCAACACTCCAGTTAGGTCAGCAGACTC-ACGCTCTTGCCA 1141
Query 1304 CTAAATCAGGCTTCGTATCAAACGAGTTTGTAATCAGTTCTCTGATCGTGATGTACTCAA 1363
|||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1142 CTAAATCAAGCTTCGAATCAAACGAGTTTGTAACCAGTTCTCTGATCTTGATGTACTCAA 1201
Query 1364 AATGTGGCA-TAATCGAGAGTGCACGAAAATGCTTCCAACAGATTTCCTCCAAACACAGC 1422
||||||| | |||| |||| || |||||||||||| | |||||||| ||||||||||
Sbjct 1202 AATGTGG-AGTAATTGAGAACGCGCGAAAATGCTTCGAGCAGATTTCTTCCAAACACAAT 1260
Query 1423 ACAGTAGCTTGGAACGCAATGATTCTTGGATACGCTCAACATGGTTTAGGCCAAGTCTCT 1482
||| |||| |||||||| |||||||| || ||||||||||| |||| |||||||||||||
Sbjct 1261 ACAATAGCCTGGAACGCGATGATTCTAGGCTACGCTCAACACGGTTCAGGCCAAGTCTCT 1320
Query 1483 CTTGATCTCTTCTCCCAAATGTGTAACCAAAACGTGAAGCTAGACCATGTAACCTTCACA 1542
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1321 CTTGATCTCTTCTCTCAAATGTGTAACCAAAACGTGAAACTAGACCACGTAACCTTCACT 1380
Query 1543 GCAATCCTTACAGCTTGTAGCCACACCGGTTTAATACAAGAGGGACTCGAGTTGCTTAAT 1602
||||| || ||||||||||||||||| ||||| ||||||||||| || ||||| |||||
Sbjct 1381 GCAATTCTAACAGCTTGTAGCCACACGGGTTTGATACAAGAGGGGCTTGAGTTACTTAAC 1440
Query 1603 TTAATGGAACCGGTTTACAAAATCCAACCTCGAATGGAACATTACGCAGCTGCAGTTGAT 1662
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1441 TCGATGGAACCGGTTTACAAAATCCAACCTCGAATGGAACATTATGCAGCTGCAGTTGAT 1500
Query 1663 CTCTTAGGCAGAGCAGGGCTCGTGAACAAAGCGAAAGAGTTAATCGAATCAATGCCGTTG 1722
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 1501 CTCTTAGGCAGAGCAGGGCTTGTGAACAAAGTGAAAGAGTTAATCGAATCAATGCCATTG 1560
Query 1723 AATCCTGATCCAATGGTATTGAAAACTTTCCTTGGAGTTTGCAGGGCTTGTGGAGAGATC 1782
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 AATCCTGATCCAATGGTGTTGAAAACTTTCCTTGGAGTTTGCAGGGCTTGTGGAGAGATA 1620
Query 1783 GAAATGGCTACTCAAGTGGCTAACCATTTGCTAGAGATTGAACCAGAAGATCATTTTACG 1842
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1621 GAGATGGCTACTCAAGTGGCTAACCATTTGCTAGAGATCGAACCAGAAGATCATTTTGCC 1680
Query 1843 TATGTTTCGTTGTCTCATATGTATAGTGATCTCAAGAAATGGGAAGAGAAAGCAAGTGTG 1902
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct 1681 TATGTTTCGTTGTCTCATATGTATAGTGATCTAAAGAAATGGGAAGAAAAAGCAAATGTG 1740
Query 1903 AAGAAGATGATGAAGGAGAGAGGTGTAAAGAAAGTTCCAGGTTGGAGCTGGATTGAGATT 1962
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 AAGAAGATGATGAAAGAGAGAGGTGTAAAGAAAGTTCCAGGTTGGAGCTGGATTGAGATT 1800
Query 1963 AGAAATCAAGTTAAGGCCTTTAATGCTGAAGATCGATCAAATCCTCTTT-GTCAAGATAT 2021
|||||||||||||| ||||||||||||||||| ||||| || |||||| | |||| ||
Sbjct 1801 AGAAATCAAGTTAATGCCTTTAATGCTGAAGACCGATCTCATTCTCTTTCGA-AAGAGAT 1859
Query 2022 ATATATGATGATTAAAGACTTGACTCAGGAAATGCAGTGGCTTGATTCTGATAATGGGGT 2081
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1860 TTATTTGATGATTGAAGACTTGACTCAGGAAATGCAGTGGCTTGATTCTGATAATGGGTT 1919
Query 2082 TGATGCA-GATTCACTT 2097
|||| || | |||||||
Sbjct 1920 TGAT-CAAGCTTCACTT 1935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79227709600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5