BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25980.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936290 jgi|Araly1|936290|scaffold_500481.1 1088 0.0
Ahg929217 jgi|Araly1|929217|scaffold_301674.1 130 2e-29
Ahg947137 jgi|Araly1|947137|scaffold_703366.1 122 4e-27
> Ahg936290 jgi|Araly1|936290|scaffold_500481.1
Length=671
Score = 1088 bits (589), Expect = 0.0
Identities = 632/653 (97%), Gaps = 2/653 (0%)
Strand=Plus/Plus
Query 177 ATGGCGTCCAAAACAGCGGCTGCTAAAGATATCATCACTTTACACGGATCTGCTGCCATC 236
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 21 ATGGCGTCCAAAACAGTGGCTGCTAAAGATATCATCACTTTACACGGATCTGCGGCCATC 80
Query 237 GTCAGCGAATTCTTCTGTTACGCTGCGAACAGTATATTGTATAATCGTGCAGTTTATCCA 296
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 81 GTCAGCGAATTCTTCTGTTACGCAGCGAACAGTATCTTGTATAATCGAGCAGTTTATCCA 140
Query 297 GAGGAAAGTTTTGTGAAAGTGAAGAAATATGGACTTCCGATGTTGCTTATTGAAGATGAA 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GAGGAAAGTTTTGTGAAAGTGAAGAAATATGGACTTCCGATGTTGCTTATTGAAGATGAC 200
Query 357 TCCGTCAAATCTTTCATGTCTAATCTCACTTCTCAGATCTCCGAATGGCTTGAAGCTGGG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TCCGTCAAATCTTTCATGTCTAATCTCACTTCTCAGATCTCCGAATGGCTTGAAGCTGGG 260
Query 417 AAGTTGCAGAGAGTAGTGTTAGTGATTATGAGTAAAGCTACTGGTGAAGTCTTGGAGAGG 476
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 261 AAGTTGCAGAGAGTAGTGTTAGTGATAATGAGCAAAGCTACTGGTGAAGTTTTGGAGAGG 320
Query 477 TGGAATTTTCGTATTGAGACTGATAATGAAGTTGTTGACAAAGGTGTGTCGAGGGAGAAG 536
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TGGAATTTTCGGATTGAGACTGATAATGAAGTTGTTGACAAAGGTGTGTCGAGGGAGAAA 380
Query 537 AGTGATAAGGAGATCATGAGGGAGATTCAAGCTATTATGAGACAGGTTGCTTCAAGTGTT 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 381 AGTGATAAGGAGATCATGAGGGAGATTCAAGCTATTATGAGACAGGTTGCTTCAAGCGTT 440
Query 597 ACTTACTTGCCTTGTCTTGATGAAACATGTGTGTTTGATGTATTGGCGTATACGGATACT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 ACTTACTTGCCTTGTCTTGATGAAACATGTGTGTTTGATGTATTGGCGTATACGGATACT 500
Query 657 GATGTGGCTGTTCCATTCACTTGGATCGAGAGCGACCCGAAGTTGATTGCTAATCCACAG 716
|||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 501 GATGTGGCTGTTCCATTCACCTGGGTCGAGAGTGACCCGAAGTTGATTGCTAATCCACAG 560
Query 717 ATGGTTAAGTTACACGGTTTTGATACCAAGATTCACAAAGTCGACACGCTTGTCTCATAC 776
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 561 ATGGTTAAGTTACACGGGTTTGATACCAAGATTCACAAAGTCGACACGCTCGTCTCGTAC 620
Query 777 AAGAACGACGAGTGGGATGAAGAAGAGTAACAGAAGTCGGGACACACGTATGC 829
||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 621 AAGAATGACGAGTGGGATGAAGAAGAGTAACAGAAGTCGGGACAC--GTATGC 671
> Ahg929217 jgi|Araly1|929217|scaffold_301674.1
Length=271
Score = 130 bits (70), Expect = 2e-29
Identities = 74/76 (97%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 177 ATGGCGTCCAAAACAGCGGCTGCTAAAGATATCATCACTTTACACGGATCTGCTGCCATC 236
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCGTCCAAAATAGTGGCTGCTAAAGATATCATCACTTTACACGGATCTGCTGCCATC 80
Query 237 GTCAGCGAATTCTTCT 252
||||||||||||||||
Sbjct 81 GTCAGCGAATTCTTCT 96
> Ahg947137 jgi|Araly1|947137|scaffold_703366.1
Length=245
Score = 122 bits (66), Expect = 4e-27
Identities = 74/78 (95%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 177 ATGGCGTCCAAAACAGCGGCTGCTAAAGATATCATCACTTTACACGGATCTGCTGCCATC 236
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 21 ATGGCGTCCAAAATAGTGGCTGCTAAAGATATCATCACTTTACACGGATCTGTTGCCATC 80
Query 237 GTCAGCGAATTCTTCTGT 254
||||||||||| ||||||
Sbjct 81 GTCAGCGAATTATTCTGT 98
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5