BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25990.1
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484361 jgi|Araly1|484361|fgenesh2_kg.5__353__AT3G25990.1 1912 0.0
Ahg920224 jgi|Araly1|920224|scaffold_101505.1 680 0.0
> Ahg484361 jgi|Araly1|484361|fgenesh2_kg.5__353__AT3G25990.1
Length=1332
Score = 1912 bits (1035), Expect = 0.0
Identities = 1247/1343 (93%), Gaps = 39/1343 (3%)
Strand=Plus/Plus
Query 41 TCTTTGACATCTTCTGCTATCTCTCCTTCTTCCTTGGAGAAAACATGTTTGTTTCCGATA 100
||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1 TCTTTGACATCTTCTTCTATCTCTCCTTGTTCCTCGGAGAAAACATGTTTGTTTCCGAT- 59
Query 101 ACAACAATCCTTCACGGGACATAAACATGATGATCGGCGATGTT--A-CATCAAACGGAG 157
|||||||||||||||||||| ||| ||||||| ||||||| | ||||||||||||
Sbjct 60 --AACAATCCTTCACGGGACATGAACCTGATGAT---CGATGTTACATCATCAAACGGAG 114
Query 158 A--T--C--T---ACAGC--C-ACA-C--CAGATCATCCTCGGAGAAAGCAGTGGAGGAG 202
| | | | ||| | | ||| | ||||||||||||||||| |||||||||||||
Sbjct 115 ATCTACCGATACAACAACAACAACATCATCAGATCATCCTCGGAGATAGCAGTGGAGGAG 174
Query 203 AGGATCATGAGATCATCAAAGCACCAAAGAAACGAGCAGAGACATGGGCACAAGACGAGA 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 AGGATCATGAGATCATCAAAGCACCAAAGAAACGAGCAGAGACATGGGCACAAGACGAGA 234
Query 263 CTCGAACCTTAATCTCATTACGGAGAGAAATGGACAATCTTTTCAACACTTCCAAATCTA 322
||||| ||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 235 CTCGATGCTTAATCTCGTTACGGAGAGAAATGGACAATCTTTTCAACACATCTAAATCTA 294
Query 323 ACAAACATCTCTGGGAACAGATTTCTAAG-AAAATGAGAGAGAAAGGGTTTGATCGATCA 381
|||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 295 ACAAACATCTTTGGGAACAGATTTC-GAGCAAAATGAGAGAGAAAGGGTTTGATCGATCA 353
Query 382 CCATCTATGTGTACGGACAAGTGGAGGAACATATTGAAAGAGTTTAAGAAAGCTAAG--- 438
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CCAACTATGTGTACGGACAAGTGGAGGAACATATTGAAAGAGTTTAAGAAAGCTAAGTAT 413
Query 439 CAACATGAAGATAAAGCAACAAGTGGAGGATCAACGAAGATGTCTTATTACAATGAGATT 498
||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 414 CAAGATGATGATAAAGCAACAAGTGGAGGATCAACGAAGATGTCTTATTACAAAGAGATT 473
Query 499 GAAGATATTTTCAGAGAAAGAAAGAAGAAAGTGGCATTCTATAAGAGTCCTGCTACTACT 558
||||| ||||| | ||||||||| ||||||||||| || |||||||||||| ||||||||
Sbjct 474 GAAGACATTTTTACAGAAAGAAACAAGAAAGTGGCCTTGTATAAGAGTCCTTCTACTACT 533
Query 559 A---CACCATCTTCTGCTAAAGTTGATTCCTTTATGCAATTTACAGATAAAGGTTTTGAA 615
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 534 ACTCCACCATCTTCTGCTAAAGTTGATTCCTTTATGCAATTTACTGATAAAGGTTTTGAA 593
Query 616 GATACTGGTATTTCATTTACATCTGTTGAAGCTAATGGCAGGCCAACGCTAAATCTTGAA 675
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GATACTGGTATTCCATTTACATCTGTTGAAGCTAATGGCAGGCCAACGCTAAATCTTGAA 653
Query 676 ACGGAGCTTGATCATGATGGTCTTCCTCTCCCCATTGCTGCTGATCCCATCACAGCAAAT 735
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 654 ACGCAGCTTGATCATGATGGTCTTCCTCTCCCCATTGCTGCTGATCCCGTCACAGCAAAT 713
Query 736 GGAGTTCCTCCTTGGAATTGGAGAGACACCCCTGGAAATGGCGTTGATGGTCAGCCATTT 795
|||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 714 GGAGTTCCTCCTTGGAGTTGGAGAGACACCGCTGGAAATGGGGGTGATGGTCAGCCATTT 773
Query 796 GCTGGGAGGATCATAACGGTGAAATTTGGAGATTACACAAGACGAGTTGGGATTGATGGT 855
| ||||||||||||||| ||||||||||||||||| |||||| || ||||||||||||||
Sbjct 774 GTTGGGAGGATCATAACAGTGAAATTTGGAGATTATACAAGAAGATTTGGGATTGATGGT 833
Query 856 ACTGCTGAAGCAATTAAGGAAGCTATCAGATCCGCGTTTAGATTGAGAACAAGACGAGCT 915
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 834 ACTGCTGAAGCAATCAAGGAAGCTATCAGATCCGCGTTTAGATTAAGAACAAGACGAGCT 893
Query 916 TTTTGGCTAGAAGATGAAGAACAGGTTATTCGCTCTCTTGACCGAGACATGCCTTTAGGG 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TTTTGGCTAGAAGATGAAGAACAGGTTATTCGCTCTCTTGACCGAGACATGCCTTTAGGG 953
Query 976 AACTATATACTCCGCATTGATGAAGGGATAGCCGTTAGAGTGTGCCACTATGATGAATCT 1035
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AACTATACACTCCGTGTTGATGAAGGGATAGCCGTTAGAGTGTGCCACTATGATGAATCT 1013
Query 1036 GATCCGTTACCAGTCCATCAAGAGGAGAAGATATTCTACACCGAAGAAGATTACCGAGAT 1095
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GATCCGCTACCAGTCCATCAAGAGGAGAAGATATTCTACACCGAAGAAGATTACCGAGAT 1073
Query 1096 TTCTTGGCTCGACGAGGATGGACATGTCTGAGAGAGTTTGACGCGTTTCAAAACATAGAC 1155
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1074 TTCTTGGCTCGACGAGGATGGACATGTCTGAGAGAGTTTGACGCGTTTCGGAACATAGAC 1133
Query 1156 AATATGGACGAGCTTCAATCCGGTCG-CTTATACAGAGGAATGAGATGAGAAAACGGTTA 1214
||||||||||| |||||||||||| | ||||||| |||||||||||||||||||||| |
Sbjct 1134 AATATGGACGATCTTCAATCCGGT-GTCTTATACCGAGGAATGAGATGAGAAAACGGGT- 1191
Query 1215 CTACAGAAGGCTAGAAGAAACCTTTTATTTTTCATCAGTCACTATAAATAG-Cttttttt 1273
||||| ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct 1192 CTACAAAAGGCTAGAAGAAACCTTT-ATTTTTCATCAGTCACTGTAAATACACTTTTTTT 1250
Query 1274 GATCCAAAATAC-TTTATTTTCATCAGTCACTGTACATATGCACCTCTTTTGACATGCCA 1332
|||||||| || |||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 1251 TATCCAAAA-ACCTTTATTTTCATCGGTCACTGTAAATATGCACCTCTTTTGACATTCCA 1309
Query 1333 TTGTGAATCAGAGGAATTTGATT 1355
||||||||||||| |||||||||
Sbjct 1310 TTGTGAATCAGAGAAATTTGATT 1332
> Ahg920224 jgi|Araly1|920224|scaffold_101505.1
Length=1283
Score = 680 bits (368), Expect = 0.0
Identities = 876/1105 (79%), Gaps = 100/1105 (9%)
Strand=Plus/Plus
Query 163 CAGCCAC-AC--CAGA-TCATCCTCGGAGAAAGCAGTGGAGGAGAGGATCATG-AGATCA 217
||||||| || |||| || ||||||||||||||||| || |||||||| | || |
Sbjct 203 CAGCCACAACAACAGATTC-TCCTCGGAGAAAGCAGT---GGTGAGGATCACGAAG-T-- 255
Query 218 TCAAAGCACCAAAGAAACGAGCAGAGACATGGGCACAAGACGAGACTCGAACCTTAATC- 276
| ||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||
Sbjct 256 T-AAAGCACCAAAGAAACGAGCAGAGACATGGGTTCAAGACGAAACTCGTAGCTTAATCA 314
Query 277 TCATTACGGAGAGAAATGGACAATCTT-TTCAACACTTCCAAATCTAACAAACATCTCTG 335
| || || |||| ||||| | || |||||||| ||||||||||| || ||||||||
Sbjct 315 TG-TTCCGTAGAGGTATGGATGGT-TTATTCAACACATCCAAATCTAATAAGCATCTCTG 372
Query 336 GGAACAGATTTCTAAGAAAATGAGAGAGAAAGGGTTTGATCGATCACC-ATCTATGTGTA 394
||||||||||||| || |||||||| ||||||||||||||||| || | |||||||||
Sbjct 373 GGAACAGATTTCTGCTAAGATGAGAGAAAAAGGGTTTGATCGATCTCCGA-CTATGTGTA 431
Query 395 CGGACAAGTGGAGGAA-CATATTGAAAGAGTTTAAGAAAGCTAAGCAACATGAAGATAAA 453
| || ||||||||||| | |||||||||||||||||||||| ||||| ||||| || |
Sbjct 432 CTGATAAGTGGAGGAATC-TATTGAAAGAGTTTAAGAAAGCAAAGCATCATGA---TAGA 487
Query 454 GCAACAAGTGGAGGATCAACGAAGATGTCTTATTACAATGAGATTGAAGATATT-TTCAG 512
| | | |||| ||| |||||||||| |||||||| ||||||||||||||| || ||
Sbjct 488 GGGA-A--TGGA---TCAGCGAAGATGTCGTATTACAAGGAGATTGAAGATATTCTT-AG 540
Query 513 AGAAAGAAAGAAGAAAGTGGCATT-C--TATAA---GAGTCCTGCTACTACTAC-ACC-A 564
||| || || ||||||||| || | ||||| ||| || ||| ||| || ||| |
Sbjct 541 AGAGAGGAACAAGAAAGTGACACCACAGTATAATAAGAG-CC--CTAATAC-ACCACCTA 596
Query 565 TCTTCTGCTAAAGTTGATTCCTTTATGCAATTTACAGATAAAGGTTTTGAAGATACTGGT 624
| || || |||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 597 -CATCAGCCAAAGTTGATTCCTTTATGCAATTTACTGATAAAGGTTTTGATGATACAAGC 655
Query 625 ATTTCATTTACATCTGTTGAAGCTAATGGCAGGCCAACGCT-AAATCTTGAAACGGAG-C 682
||||| ||| ||| ||||||||||||||||||||| | || ||| ||||||| || | |
Sbjct 656 ATTTCTTTTGGATCCGTTGAAGCTAATGGCAGGCCAGC-CTTAAACCTTGAAA-GGCGTC 713
Query 683 TTGATCATGATGGTCTTCCTCTCCCCATTGCTGC--T-GATCCCATCACAGCAAATGGAG 739
||||||||||||||| |||||| | || || | | ||| | | ||||||||||||
Sbjct 714 TTGATCATGATGGTCATCCTCTTGCAATCACTACAGTTGATGCTGTTGCAGCAAATGGAG 773
Query 740 TT-CCTCCTTGGAATTGGAGAGACACCCCTGGAAATGGCG-T--T-G--ATGGTCAGCCA 792
|| || ||||||||||||||||| || |||||||| || | | | | |||||||| |
Sbjct 774 TTACC-CCTTGGAATTGGAGAGAGACTCCTGGAAACGGTGGTGATAGTCATGGTCAGGCT 832
Query 793 TTTGCTGGGAGGATCATAACGGTGAAATTTGGAGATTACACAAGACGAGTTGG-GATTGA 851
|||| ||||||| ||||||| ||||||||||| || || |||||| || | || | ||||
Sbjct 833 TTTGGTGGGAGGGTCATAACTGTGAAATTTGGTGACTATACAAGAAGAATCGGCG-TTGA 891
Query 852 TGGTACTGCTGAAGCAATTAAGGAAGCTATCAGATCCGCGTTTAGATTGAGAACAAGACG 911
||||| ||| |||||||| || || || |||||||| || ||| | || ||||| ||||
Sbjct 892 TGGTAGTGCAGAAGCAATCAAAGAGGCAATCAGATCTGCTTTTGGGTTAAGAACTCGACG 951
Query 912 AGCTTTTTGGCTAGAAGATGAAGAACAGGTTATTCGCTCTCTTGACCGAGACATGCCTTT 971
|||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||||| ||
Sbjct 952 AGCTTTTTGGTTAGAAGATGAAGATCAGATTATTCGCTGTCTTGACCGAGACATGCCCTT 1011
Query 972 AGGGAACTATATACTCCG-C---AT--TG-ATG-AA----------G--GGA-TAGCCGT 1010
|||||||||| |||||| | || || ||| || | ||| | ||| |
Sbjct 1012 AGGGAACTATCTACTCCATCTCGATAATGTATGCAAAACCCATCTTGCAGGACTGGCCAT 1071
Query 1011 TAGAGTGTGCCACTATGATGAATCTGATCCG-TTACCAGTCCAT-CAAGAGGAGAAGATA 1068
||| || ||||| ||||||||||| | || |||||||||||| || || ||||||||
Sbjct 1072 TAGGGTTTGCCATTATGATGAATCCAA-CCAATTACCAGTCCATTCA-GAAGAGAAGATC 1129
Query 1069 TTCTACACCGAAGAAGATTACCGAGATTT-CTTGGCTCGACGAGGATGGACATGTCT-GA 1126
|||||||| |||||||||||||| ||||| || ||||||||| ||||||||||| || |
Sbjct 1130 TTCTACACGGAAGAAGATTACCGCGATTTTCT-GGCTCGACGGGGATGGACATG-CTTGC 1187
Query 1127 GAGAGTTTGACGCGTTTCAA-AACATAGACAATATGGACGAGCTTCAATCC-GGTCGCT- 1183
| |||| || | |||| | |||||||| || ||||| || |||||| || ||| ||
Sbjct 1188 -A-AGTT-GATG-GTTTTAGGAACATAGAAAACATGGATGATCTTCAA-CCTGGT-GCCG 1241
Query 1184 TATACAGAGGAATGAGATGAGAAAA 1208
| ||| |||| |||||||||||||
Sbjct 1242 TGTACCGAGGTGTGAGATGAGAAAA 1266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51351569199
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5