BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26000.1
Length=2342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484362 jgi|Araly1|484362|fgenesh2_kg.5__354__AT3G26000.1 2418 0.0
> Ahg484362 jgi|Araly1|484362|fgenesh2_kg.5__354__AT3G26000.1
Length=2060
Score = 2418 bits (1309), Expect = 0.0
Identities = 1674/1839 (91%), Gaps = 69/1839 (4%)
Strand=Plus/Plus
Query 357 aaaaaaaaaagg-aaaaaTCAAATTTATTCAATTCATTCTTTTTGTGTTACCCAAATTCG 415
||||||||| || |||||||| |||||||||||||||||||||||||||||| |||| |
Sbjct 273 AAAAAAAAAGGGAAAAAATCAGTTTTATTCAATTCATTCTTTTTGTGTTACCC-AATTTG 331
Query 416 GTTGTTAATACGTCTCAATTTCGAATTTC-TTT-TCTAGGGTTTTTTAGGGTTCCAAGGA 473
||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct 332 GTTGTTAATACGTCTCAATTTCGAATTTCTTTTCTCTA-GGTTTTTTAGGGTTCCAAGGA 390
Query 474 AGCTCTCAAAATTTCTGGTGCCTAGTAtttttttGTTGCCATCTGAAATCAAGAGTTTCC 533
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 AGCTCTGAAAATTTCTGGTGCCTAGTATTTTTTTGTTGCCATCTGAAATCAAGAGTTTCC 450
Query 534 --TTTTTCTCTCCATAGATCTATTAATTCATCTTTCGATTATCCaaaaaaaaaaaTAACT 591
||||||| |||||||||| | | || ||||||| || || |||| ||
Sbjct 451 TTTTTTTCTGTCCATAGATC---T-A-TCGCCTTTCGA-TAACC------CAAAA-AA-- 495
Query 592 TTTTAGTTTATCTTCGGATCTGATCTATCTTCTTTA-GGGGGTTTTGAG-TTTTTCT-AG 648
| | |||||||||||||||||||| ||| |||||||||||| ||||| | ||
Sbjct 496 ----A----A--TTCGGATCTGATCTATCTTC-TTAGGGGGGTTTTGAGTTTTTTTTCAG 544
Query 649 GGATTGTGTACAAAAGAGGGAtttttttGGTTTTGTTAGGTTTAAAGTGTATATAGAGA- 707
||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct 545 GGATTGTGTACAAAAGAGGGA-----TT--TTTT-TTAGGTTTAAAGTGTATATAGAGAT 596
Query 708 TTAATAGAAATGGCTTTAAATTTTTCACATAGACCTTTTTCTTCTCATCTATCTGAGGAA 767
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 597 TTAATAGAAATGGCTTTAAATTTTTCACATAGACCCTTTGCTTCTCATCTATCTGAGGAA 656
Query 768 CCAATGATGATAGCCAATGGGAATTGGTGTTCAAGTTTCGATAATGGAAGGAAGAATACT 827
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 657 CCAATGAAGATAGCCAATGGGAATTGGTGTTCAAGTTTTGATAATGGAAGGAAGAGTAAT 716
Query 828 GGAGGAGATGCTTCTTCTGTTGATATACTTGATGTTTTGCCATCTGATCCGTTTGGTATG 887
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 717 ---GGAGATTCTTCTTCTGTTGACATACTTGATGTTTTGCCATCTGATCCGTTTGGTATG 773
Query 888 GATATCAACAATACTTTCACGGCTATTACTGGATGGCTTGAGGATTTGGAGGATGATTAT 947
||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||
Sbjct 774 GATATCAACAATACTTTCACGGCCATTACTGGATGGCTTGAGGATTT----G--GATTAT 827
Query 948 AATAACCAATATGGAAGAAGAAGAAGAGATGACATTTGGATTGGTGATGGAAACCGTCAG 1007
|||||||||||| | |||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 828 AATAACCAATAT-G--GAAGAAGAAGTGATGACATTTGGATTGGTGATGGAAACCATCAG 884
Query 1008 CAGCTGTTTGCTGGATTGAGTTTCTTTTGGAACAATGCAATGCAGTTTCAGAGTAGTGGT 1067
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 885 CAGCTCTTTGCTGGATTGAGTTTCATTTGGAACAATGCAATGCAGTTTCAGAGTAGTGGG 944
Query 1068 TACAGTTATGGATCAGAGTC-----AT-TGTTTGGTGGGGCGTTTGATGGGTCTCTGTTT 1121
|| ||| ||||||| ||||| || |||||||||||| |||||||||||| |||||
Sbjct 945 TATAGTAATGGATCGGAGTCGTTGTATGGGTTTGGTGGGGCATTTGATGGGTCTTTGTTT 1004
Query 1122 TCCACATGTAAATTCCCTGAAAGTAGTGGGGAAAATAATGGGTTTGGAGGGGCATTAGAT 1181
||| ||||||||||||| || ||||||||||| ||||||| ||||||||| ||||| |||
Sbjct 1005 TCCGCATGTAAATTCCCGGAGAGTAGTGGGGACAATAATGTGTTTGGAGGAGCATTTGAT 1064
Query 1182 GGTGATGGATCTTGTCATGGTGCTTTCATATCTGCTAGTAGTGTTGATGAGGTATTGAGC 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 GGTGATGGATCTTGTCATGGTGCTTTCATATCTGCTAGTAGTGTTGATGAGGTATTGAGC 1124
Query 1242 CATGAGAATGCGAGGAATGGTGAAGTTGTAGGAAGTAGTGATCGCTGCAATAATGGAGAA 1301
| |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1125 CTTGAGGATGCGAGGAATGGTGGAGTTGTAGGAAGTAGTGATCGCTACAATAATGGAGGC 1184
Query 1302 GAGGATGCGTATGTTCATCCAGCGATTGGTTTTTGTCTTTATCACTTGCGAGGGAAGGAT 1361
|||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 1185 GAGGATGCAAATGTTCATCCAGCGTTTGGTTTTTGTCTTTATCACTTGGGAGTGAAGGAT 1244
Query 1362 CTTCTTTCAGTTAGTATGGTTTGCAAGTCTTTGCATACTACTGTTTGTGATGACACGTTA 1421
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1245 CTTCTTTCAGTTAGTATGGTTTGCAAGTCTCTGCATACTACTGTTTGTGATGACTCGTTA 1304
Query 1422 CTT-TGGAAGCATATCCACATTTGTCGACCGTTGAATGAGAAGATCACGGAAGAGGCTCT 1480
|| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1305 -TTGTGGAAGCATATCCACATTTGTCAACCGTTGAATGAGAAGATTACGGAAGAGGCTCT 1363
Query 1481 ACTGCATTTAACTGAGAGGGCTCAGGGTACTATGCAGTGTTTGAGGATCGTAGATTGCTG 1540
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1364 GCTGCATTTAACTGAGAGGGCTCAGGGTACTATGCAGTGTTTGAGGCTTGTAGATTGCTG 1423
Query 1541 TAGAATTACTGATGATTGTCTTAAGCGGGTGGTGGCGCGCAACCGACAAGTAGTCAAGAT 1600
||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||| |
Sbjct 1424 TAGAATTACAGATGATTGTCTTAAGCGGGTGTTGGAGCGCAACCCACAAGTAGTCAAGCT 1483
Query 1601 TGGTGTGCCTGGATGCACAAGGATAACTATCGATGGTATTTTGAGCGTCTTGAGGGATCT 1660
|||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct 1484 TGGTGTGCCTGGATGCACAAGGATCACTATCGACGGTATTTTGAGCATCTTGAGGGATCT 1543
Query 1661 GAAGTCTGCGGGAAAGCTTCAAGTGAAGCATTTACAACTTCGTGGCCTCTTTGGAGTGAC 1720
|||||||| ||||||||||||||||||||||||| || || ||||||||||||| || ||
Sbjct 1544 GAAGTCTGTGGGAAAGCTTCAAGTGAAGCATTTAGAAATTGGTGGCCTCTTTGGTGTTAC 1603
Query 1721 TAAAGATCACTACGATGAACTGATTGACTTGTTGAACATTGACAATAAAGTCAAGCAGAC 1780
|||||||||||||||||| || |||||||||||||||| |||||||||||| |||||||
Sbjct 1604 GAAAGATCACTACGATGAATTGTTTGACTTGTTGAACATAGACAATAAAGTCGAGCAGAC 1663
Query 1781 TATTCAGAAGCCGCGTTTTTACCATAGAGGAGAAGCTTGTGTGTCCTGTGATGATGACCG 1840
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1664 TATTCAGAAGCCGCGTTTTTACCATAGAGGAGATGCATGTGTGTCCTGTGATGATGACCG 1723
Query 1841 GGCACTAGATATTGAGATGTGCCCAAAGTGTCAAAATTTTA-AGCTTGTGTATGACTGTC 1899
||| ||||||||||||||||||||||||||||| |||| || | ||||||||||||||||
Sbjct 1724 GGCGCTAGATATTGAGATGTGCCCAAAGTGTCAGAATTCTAGA-CTTGTGTATGACTGTC 1782
Query 1900 CAGCAGAAGATTGTAAAGGGAAAAAGAAAGGTTCTGAGGAATGCCGTGCTTGTTCTCTTT 1959
|||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1783 CAGCTGAAGATTGTAAAGGGAAAAAGGAAGGTTCTGAGGAATGCCGGGCTTGTTCTCTTT 1842
Query 1960 GCATACAGAGGTGTTATCATTGTGGTCGGTGCATCATTGACA-CTGAATACGAAGAAATG 2018
||||||||||||||||||| |||||||||||||||| ||||| | ||||||||||||| |
Sbjct 1843 GCATACAGAGGTGTTATCACTGTGGTCGGTGCATCAATGACAGC-GAATACGAAGAAACG 1901
Query 2019 TTTTGTTTAGAGCTTTTGTGTGCTGTTTGTTCGAAGCCGACCCCTAAGTTAACTCTCTAG 2078
|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1902 TTTTGTCTAGAGTTTTTGTGTGCTGTTTGTTCGAAGCCGGCCCCTAAGTTAACTCTCTAG 1961
Query 2079 GTATAAAATTCCATCTGAGCCTTTCTCTTCTCTATGATTGAATGACTCAGTCTCCACGGT 2138
|||||||||||||||||||||||||| |||| |||||||||||| |||||||||| ||
Sbjct 1962 GTATAAAATTCCATCTGAGCCTTTCTTTTCTATATGATTGAATGGTTCAGTCTCCATGGC 2021
Query 2139 TCAATGGAGATGATCTTCAACTATCTCTAGAACCttttt 2177
|||||||||||||||||||||||||||||||| ||||||
Sbjct 2022 TCAATGGAGATGATCTTCAACTATCTCTAGAAACTTTTT 2060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88217007420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5