BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26010.1 Length=1416 Score E Sequences producing significant alignments: (Bits) Value Ahg936293 jgi|Araly1|936293|scaffold_500484.1 1596 0.0 Ahg924422 jgi|Araly1|924422|scaffold_105703.1 110 4e-23 > Ahg936293 jgi|Araly1|936293|scaffold_500484.1 Length=1285 Score = 1596 bits (864), Expect = 0.0 Identities = 1134/1260 (90%), Gaps = 35/1260 (3%) Strand=Plus/Plus Query 7 ACACGAAATCGAACCATACATCTCACTGATGCGATATGGACGGAGATTCTAGCGAGGTTA 66 |||| ||||| ||||||||||||||| || |||||||||||||||||| ||||||||||| Sbjct 30 ACACAAAATCAAACCATACATCTCACAGAGGCGATATGGACGGAGATTATAGCGAGGTTA 89 Query 67 CCACTGAGAATCATCGCTAGATTCAAATC-GGTAAGCAAAACATGGAAATCAACAATCGA 125 ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 90 CCATTGAGAATCATCGCTAGATTCAAA-CTAGTAAGCAAAACATGGAAATCAACAATCGA 148 Query 126 ATCAGTCTATTTCCGCCGTCTCTTTGTGTCTGTGCACCGAAAATCCTCAACCTCGTGGTC 185 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 149 ATCAGTCTACTTCCGCCGTCTCTTTGTGTCTGTGCACCGAAAATCCTCAACCTCGTGGTC 208 Query 186 GCTAATGTGGTACGGACAAAAAGATCTCGTAGGTTTCCATGGATGCGAGACATGGGGTCT 245 |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 209 GCTAATGTGGTACGGATTAAAAGATCTCATAGGTTTCCATGGATGCGAGACATGGGGTCT 268 Query 246 TCCAAAGTCTCTATCTTTTTACATCCCATCGTCTCTTTGTATTATCGAGG-GTTCCTCCC 304 |||||||||||||||||||||||||||||||||||||| ||| | | || || | |||| Sbjct 269 TCCAAAGTCTCTATCTTTTTACATCCCATCGTCTCTTTACATTGTTGCGGCGT-CTTCCC 327 Query 305 ATGGATTGGTTTTGATTTCAGAAAATGATGATGATTGTTGCTTTGTGGGTAATCCAGTTT 364 ||||||||||| |||||||||| ||||| ||| ||| ||||||||||| |||||||||| Sbjct 328 ATGGATTGGTTATGATTTCAGAGTATGATCATGCTTGCTGCTTTGTGGGCAATCCAGTTT 387 Query 365 TACAACAGTGGATCAAAATCCCTCCACCTCCAG-TTCACTCTTCAGTGTTTGGTTTGGTG 423 ||||||| |||||| ||||||||||| |||||| || | ||||| ||||| ||||||||| Sbjct 388 TACAACAATGGATCCAAATCCCTCCAGCTCCAGGTT-ATTCTTCTGTGTTAGGTTTGGTG 446 Query 424 TCTCGCGTCGACGA-TGATGGCTTTGTTTTGGGCTTCAAAGTCGTTAAGTTAGCTGAAGT 482 ||||||| ||||| | ||||||||||||||||||||||||| |||| |||||||||| | Sbjct 447 ACTCGCGTGGACGACT-ATGGCTTTGTTTTGGGCTTCAAAGTGGTTAGGTTAGCTGAAAT 505 Query 483 AATAGTGACGAATAACT-ATGTCTC-GTGTTCTTTGAGTGTGTTTGTGTATTCCTCTGAG 540 | ||||||||| | ||||||| | || |||||||||||||| |||||||||||||| Sbjct 506 GCGACCGACGAATAA-TGATGTCTCCG-GTACTTTGAGTGTGTTTTTGTATTCCTCTGAG 563 Query 541 ACTGGGATTTGGACTTGTAAGACTA-TTCACTGCCCTTATCAAATCACCAACTTTGGTTC 599 |||||||||||||||| ||||| || |||||||||||| || |||||||||| || ||| Sbjct 564 ACTGGGATTTGGACTTCTAAGA-TAATTCACTGCCCTTGTCGAATCACCAACACTGCTTC 622 Query 600 TTTCACTTTGGATGGTACCATTTACTTTGACCATCTTAGTGAACCTGGAGTGCTCGTAGC 659 ||| |||||||||||| | ||||||||| |||||||||||||||||||||| |||||||| Sbjct 623 TTTGACTTTGGATGGTTCAATTTACTTTAACCATCTTAGTGAACCTGGAGTACTCGTAGC 682 Query 660 TTATGATTTCTATTCTGAAATC-TCCGATCAGTTTTGGGTTATACCTCTCCCGGATCATC 718 |||||||||||| |||||| || |||||||| ||| |||||||||||||||| ||||||| Sbjct 683 TTATGATTTCTACTCTGAA-TCCTCCGATCAATTTCGGGTTATACCTCTCCCTGATCATC 741 Query 719 CGAATCACGGCTTCAAT-AGCGACTTCAAAGGTGCTTTGACTACGTCCCAAGGA-TTTGT 776 ||||||||||||||||| | |||||||||||||||||||||||||||||| ||| ||| | Sbjct 742 CGAATCACGGCTTCAATCA-CGACTTCAAAGGTGCTTTGACTACGTCCCACGGAATTT-T 799 Query 777 CATGTATATCAGAACATTAGCTCAATCTTCGTCTAATGTTTTCAAGGCTTGGAGGTTGAA 836 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 800 CATGTATATCAGAACATTAGCTCAATCCTCGTCTAATGTTTTCAAGGCTTGGAGGTTGAA 859 Query 837 CAATGATTCAACTTGGCAACTTTTGTGGAAAATCGGCCTCCCG-TCACTTATCGGTGATT 895 |||||||| | | ||||||||||||||||| |||| ||||||| | |||||||||||||| Sbjct 860 CAATGATTTATCCTGGCAACTTTTGTGGAATATCGCCCTCCCGCT-ACTTATCGGTGATT 918 Query 896 ATGTACCTATGGCAATGCATCCATTTGATAGTGACATTGTCCATCTTTGGAGTCAAGATC 955 || ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| Sbjct 919 ATCTACCTATGGCAATGCATCCATTTGATAGTGACACAGTCTATCTATGGAGTCAAGAGA 978 Query 956 ATCGTCATGTGGTATCATGGAACTTGCGGACTCAGAAGAATAGAATCCTCGGAGCTGAAG 1015 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 979 ATCGTCATGTGGTATCATGTAACTTGCGGACTCAGAAGAATAGAATCCTCGGAGCTGAAG 1038 Query 1016 ATAATGATGAAGATCATAAAGATTGTTACTTGAACCAGCCTGTTTGTGAGGAGTGTATGG 1075 |||||||||| |||||| |||||||| ||||||||||||| |||||||||||||||||| Sbjct 1039 ATAATGATGATGATCATCTAGATTGTTTCTTGAACCAGCCTATTTGTGAGGAGTGTATGG 1098 Query 1076 ATGAGATATGC-GGCTGTAAAGCTTCTGTCAGGTTACTACAACTTGTT-CTCCCACGGTG 1133 ||||||||||| || | ||||| ||||||||||||| ||||| ||| | ||||||||||| Sbjct 1099 ATGAGATATGCAGG-TATAAAGTTTCTGTCAGGTTATTACAA-TTGGTGCTCCCACGGTG 1156 Query 1134 GATGGAATCGGTGCCTTGTCCTCCCCAAGTTGAGATGAT-GAATACAGCTTCGGTA-ATC 1191 ||||||||||| || |||||||||||||||||||||||| || |||| |||| || || Sbjct 1157 GATGGAATCGGCGCTTTGTCCTCCCCAAGTTGAGATGATAGA-TACATCTTCATTACAT- 1214 Query 1192 TCTTACGTTACTTCAATGCAAGAGACAATGAT-AAGGAATTGGCTTCATCAATGATTTCA 1250 |||||||||| |||||||||||||||| || |||||||||| | ||||||||||| Sbjct 1215 TCTTACGTTAAGTCAATGCAAGAGACAA-GAAGAAGGAATTGGAA-C--CAATGATTTCA 1270 > Ahg924422 jgi|Araly1|924422|scaffold_105703.1 Length=1471 Score = 110 bits (59), Expect = 4e-23 Identities = 74/81 (91%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 1124 TCCCACGGTGGATGGAATCGGTGCCTTGTCCTCCCCAAGTTGAGATGATGAATACAGCTT 1183 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 1273 TCCCACGGTGGATGGAATCGCTGCCTTGTCCTCCCCAAGTTGAGATGATGGATACAACTT 1332 Query 1184 CGGTAATCTCTTACGTTACTT 1204 | ||| |||||||| || ||| Sbjct 1333 CAGTACTCTCTTACATT-CTT 1352 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52945440550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5