BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26010.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936293 jgi|Araly1|936293|scaffold_500484.1 1596 0.0
Ahg924422 jgi|Araly1|924422|scaffold_105703.1 110 4e-23
> Ahg936293 jgi|Araly1|936293|scaffold_500484.1
Length=1285
Score = 1596 bits (864), Expect = 0.0
Identities = 1134/1260 (90%), Gaps = 35/1260 (3%)
Strand=Plus/Plus
Query 7 ACACGAAATCGAACCATACATCTCACTGATGCGATATGGACGGAGATTCTAGCGAGGTTA 66
|||| ||||| ||||||||||||||| || |||||||||||||||||| |||||||||||
Sbjct 30 ACACAAAATCAAACCATACATCTCACAGAGGCGATATGGACGGAGATTATAGCGAGGTTA 89
Query 67 CCACTGAGAATCATCGCTAGATTCAAATC-GGTAAGCAAAACATGGAAATCAACAATCGA 125
||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 90 CCATTGAGAATCATCGCTAGATTCAAA-CTAGTAAGCAAAACATGGAAATCAACAATCGA 148
Query 126 ATCAGTCTATTTCCGCCGTCTCTTTGTGTCTGTGCACCGAAAATCCTCAACCTCGTGGTC 185
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ATCAGTCTACTTCCGCCGTCTCTTTGTGTCTGTGCACCGAAAATCCTCAACCTCGTGGTC 208
Query 186 GCTAATGTGGTACGGACAAAAAGATCTCGTAGGTTTCCATGGATGCGAGACATGGGGTCT 245
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 209 GCTAATGTGGTACGGATTAAAAGATCTCATAGGTTTCCATGGATGCGAGACATGGGGTCT 268
Query 246 TCCAAAGTCTCTATCTTTTTACATCCCATCGTCTCTTTGTATTATCGAGG-GTTCCTCCC 304
|||||||||||||||||||||||||||||||||||||| ||| | | || || | ||||
Sbjct 269 TCCAAAGTCTCTATCTTTTTACATCCCATCGTCTCTTTACATTGTTGCGGCGT-CTTCCC 327
Query 305 ATGGATTGGTTTTGATTTCAGAAAATGATGATGATTGTTGCTTTGTGGGTAATCCAGTTT 364
||||||||||| |||||||||| ||||| ||| ||| ||||||||||| ||||||||||
Sbjct 328 ATGGATTGGTTATGATTTCAGAGTATGATCATGCTTGCTGCTTTGTGGGCAATCCAGTTT 387
Query 365 TACAACAGTGGATCAAAATCCCTCCACCTCCAG-TTCACTCTTCAGTGTTTGGTTTGGTG 423
||||||| |||||| ||||||||||| |||||| || | ||||| ||||| |||||||||
Sbjct 388 TACAACAATGGATCCAAATCCCTCCAGCTCCAGGTT-ATTCTTCTGTGTTAGGTTTGGTG 446
Query 424 TCTCGCGTCGACGA-TGATGGCTTTGTTTTGGGCTTCAAAGTCGTTAAGTTAGCTGAAGT 482
||||||| ||||| | ||||||||||||||||||||||||| |||| |||||||||| |
Sbjct 447 ACTCGCGTGGACGACT-ATGGCTTTGTTTTGGGCTTCAAAGTGGTTAGGTTAGCTGAAAT 505
Query 483 AATAGTGACGAATAACT-ATGTCTC-GTGTTCTTTGAGTGTGTTTGTGTATTCCTCTGAG 540
| ||||||||| | ||||||| | || |||||||||||||| ||||||||||||||
Sbjct 506 GCGACCGACGAATAA-TGATGTCTCCG-GTACTTTGAGTGTGTTTTTGTATTCCTCTGAG 563
Query 541 ACTGGGATTTGGACTTGTAAGACTA-TTCACTGCCCTTATCAAATCACCAACTTTGGTTC 599
|||||||||||||||| ||||| || |||||||||||| || |||||||||| || |||
Sbjct 564 ACTGGGATTTGGACTTCTAAGA-TAATTCACTGCCCTTGTCGAATCACCAACACTGCTTC 622
Query 600 TTTCACTTTGGATGGTACCATTTACTTTGACCATCTTAGTGAACCTGGAGTGCTCGTAGC 659
||| |||||||||||| | ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 623 TTTGACTTTGGATGGTTCAATTTACTTTAACCATCTTAGTGAACCTGGAGTACTCGTAGC 682
Query 660 TTATGATTTCTATTCTGAAATC-TCCGATCAGTTTTGGGTTATACCTCTCCCGGATCATC 718
|||||||||||| |||||| || |||||||| ||| |||||||||||||||| |||||||
Sbjct 683 TTATGATTTCTACTCTGAA-TCCTCCGATCAATTTCGGGTTATACCTCTCCCTGATCATC 741
Query 719 CGAATCACGGCTTCAAT-AGCGACTTCAAAGGTGCTTTGACTACGTCCCAAGGA-TTTGT 776
||||||||||||||||| | |||||||||||||||||||||||||||||| ||| ||| |
Sbjct 742 CGAATCACGGCTTCAATCA-CGACTTCAAAGGTGCTTTGACTACGTCCCACGGAATTT-T 799
Query 777 CATGTATATCAGAACATTAGCTCAATCTTCGTCTAATGTTTTCAAGGCTTGGAGGTTGAA 836
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 800 CATGTATATCAGAACATTAGCTCAATCCTCGTCTAATGTTTTCAAGGCTTGGAGGTTGAA 859
Query 837 CAATGATTCAACTTGGCAACTTTTGTGGAAAATCGGCCTCCCG-TCACTTATCGGTGATT 895
|||||||| | | ||||||||||||||||| |||| ||||||| | ||||||||||||||
Sbjct 860 CAATGATTTATCCTGGCAACTTTTGTGGAATATCGCCCTCCCGCT-ACTTATCGGTGATT 918
Query 896 ATGTACCTATGGCAATGCATCCATTTGATAGTGACATTGTCCATCTTTGGAGTCAAGATC 955
|| ||||||||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 919 ATCTACCTATGGCAATGCATCCATTTGATAGTGACACAGTCTATCTATGGAGTCAAGAGA 978
Query 956 ATCGTCATGTGGTATCATGGAACTTGCGGACTCAGAAGAATAGAATCCTCGGAGCTGAAG 1015
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 979 ATCGTCATGTGGTATCATGTAACTTGCGGACTCAGAAGAATAGAATCCTCGGAGCTGAAG 1038
Query 1016 ATAATGATGAAGATCATAAAGATTGTTACTTGAACCAGCCTGTTTGTGAGGAGTGTATGG 1075
|||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1039 ATAATGATGATGATCATCTAGATTGTTTCTTGAACCAGCCTATTTGTGAGGAGTGTATGG 1098
Query 1076 ATGAGATATGC-GGCTGTAAAGCTTCTGTCAGGTTACTACAACTTGTT-CTCCCACGGTG 1133
||||||||||| || | ||||| ||||||||||||| ||||| ||| | |||||||||||
Sbjct 1099 ATGAGATATGCAGG-TATAAAGTTTCTGTCAGGTTATTACAA-TTGGTGCTCCCACGGTG 1156
Query 1134 GATGGAATCGGTGCCTTGTCCTCCCCAAGTTGAGATGAT-GAATACAGCTTCGGTA-ATC 1191
||||||||||| || |||||||||||||||||||||||| || |||| |||| || ||
Sbjct 1157 GATGGAATCGGCGCTTTGTCCTCCCCAAGTTGAGATGATAGA-TACATCTTCATTACAT- 1214
Query 1192 TCTTACGTTACTTCAATGCAAGAGACAATGAT-AAGGAATTGGCTTCATCAATGATTTCA 1250
|||||||||| |||||||||||||||| || |||||||||| | |||||||||||
Sbjct 1215 TCTTACGTTAAGTCAATGCAAGAGACAA-GAAGAAGGAATTGGAA-C--CAATGATTTCA 1270
> Ahg924422 jgi|Araly1|924422|scaffold_105703.1
Length=1471
Score = 110 bits (59), Expect = 4e-23
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 1124 TCCCACGGTGGATGGAATCGGTGCCTTGTCCTCCCCAAGTTGAGATGATGAATACAGCTT 1183
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 1273 TCCCACGGTGGATGGAATCGCTGCCTTGTCCTCCCCAAGTTGAGATGATGGATACAACTT 1332
Query 1184 CGGTAATCTCTTACGTTACTT 1204
| ||| |||||||| || |||
Sbjct 1333 CAGTACTCTCTTACATT-CTT 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5