BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26020.4
Length=2271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936295 jgi|Araly1|936295|scaffold_500486.1 1472 0.0
Ahg471504 jgi|Araly1|471504|fgenesh2_kg.1__1458__AT1G13460.2 721 0.0
> Ahg936295 jgi|Araly1|936295|scaffold_500486.1
Length=1602
Score = 1472 bits (797), Expect = 0.0
Identities = 924/982 (94%), Gaps = 22/982 (2%)
Strand=Plus/Plus
Query 374 TTCTGGTGTTGAGAATAAG-AAACTATGTGGAAACAGATTCTAAGTAAGCTTCCCAACAA 432
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1 TTCTGGTGTTGAGAATAAGAAAACTATGTGGAAACAGATTCTAAGTAAGCTTCCTAACAA 60
Query 433 AAAGTCTTCAAAGCACGAACATCGTGGACGTGAACACGGTGGCCATTCTTCTTCATCTTC 492
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGTCTTCTAAGCACGAACATCGTGGACGTGAACACGGTGGCCATTCTTCTTCATCTTC 120
Query 493 TCATACTTCAGGTGCCTCTACTTCCAAAAGCACTGATAATGG---C--G----CCGCGAA 543
||||||||| | |||||||||||| |||| || ||||||||| | | | | |||
Sbjct 121 TCATACTTCTGCTGCCTCTACTTCGAAAAACAGTGATAATGGTACCGGGAAATCAGGGAA 180
Query 544 ATCGCATGCTAAGAACGCTTCTCCAGCCGGCAAATCCGCTGCTTCTGACTCGGGTTTTAA 603
|||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||
Sbjct 181 TTCGCATGCTAAGAACGCTTCAGCAGGTGGGAAATCCGCTGCTTCTGACTCGGGTTATAA 240
Query 604 AGATGGGAATCTAAAGAGTAGT-GG-G--a-a-caac-a-a-caac-a-a-caacaacaa 651
||||||||||||||||| |||| || | | | |||| | | |||| | | |||||||||
Sbjct 241 AGATGGGAATCTAAAGAATAGTGGGAGCAACAGCAACAACAGCAACAACAGCAACAACAA 300
Query 652 cGGTGTCTTTACTCCTTATGAAGCATTGCCGAGTTTTAAAGATGTTCCAAACACGGAAAA 711
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGGAGTCTTTACTCCTTATGAAGCATTGCCGAGTTTTAAAGATGTTCCAAACACGGAAAA 360
Query 712 GCAAAACTTGTTCATTAAAAAGTTGAACTTGTGCCGTGTAGTGTTTGATTTCACGGATCC 771
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 GCAAAACTTGTTCATAAAAAAGTTGAACTTGTGCCGTGTAGTGTTTGATTTCACAGATCC 420
Query 772 TACAAAGAACATCAAGGAAAAAGATATTAAGAGGCAGACATTGCTGGAGCTTGTGGATTA 831
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 421 TACAAAGAATATCAAGGAAAAAGAGATTAAGAGGCAGACATTACTGGAGCTTGTGGACTA 480
Query 832 TGTGAATTCTCCTAATGGAAAGTTTAGCGAAGTCGGTATCCAAGAAGTCGTTCGGATGGT 891
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 TGTGAATTCTCCTAATGGAAAGTTTAGCGAAGTGGGTATCCAAGAAGTCGTTCGGATGGT 540
Query 892 CTCTGCTAACATATTTAGAACGCTAAATCCTCAACCACGGGAAAATAAAGTTATCGATGC 951
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 CTCTGCTAACATATTTAGAACGCTAAATCCTCAACCACGGGAAAATAAAGTTATTGATGC 600
Query 952 CTTAGACCTGGAGGAGGAAGAACCTTCCATGGATCTTGCGTGGCCTCACTTGCAGCTTGT 1011
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 CTTAGACCTGGAGGAGGAAGAACCTTCCATGGATCTTGCATGGCCTCACTTGCAGCTTGT 660
Query 1012 GTATGAGCTTTTCTTGAGGTTTGTTGCTTCGCCTGAAACTGACACCAAGCTGGCTAAGAG 1071
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 661 GTATGAGCTTTTCTTGAGGTTTGTTGCTTCGCCTGAAACTGACACCAAGTTGGCGAAGAG 720
Query 1072 ATATATAGATCAATCTTTTGTCTTGCGGTTACTGGATTTATTTGATTCCGAGGATCCTAG 1131
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 721 ATATATAGATCAATCTTTTGTCTTGCGGTTGCTCGATTTATTTGATTCCGAGGATCCTAG 780
Query 1132 AGAAAGAGATTGTCTGAAAACCATTCTCCATCGGATCTATGGTAAATTTATGGTACACCG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGAAAGAGATTGTCTGAAAACCATTCTCCATCGGATCTATGGTAAATTTATGGTACACCG 840
Query 1192 ACCTTTCATCAGGAAATCCATTAACAACATCTTCTATAGGTTTGTTTTCGAAACAGAGAA 1251
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACCTTTCATCAGGAAATCCATAAACAACATCTTCTATAGGTTTGTTTTCGAAACAGAGAA 900
Query 1252 ACATAATGGGATTGCTGAGTTTCTAGAAATCTTGGGAAGTATCATCAATGGATTCGCTCT 1311
|||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 901 ACATAACGGGATTGCTGAGTTTCTTGAAATCTTGGGTAGTATCATCAATGGATTTGCTCT 960
Query 1312 TCCCTTGAAAGACGAGCACAAA 1333
||||||||||||||||||||||
Sbjct 961 TCCCTTGAAAGACGAGCACAAA 982
Score = 525 bits (284), Expect = 5e-148
Identities = 312/326 (96%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 1682 GTTGCAGAGAGAGCTTTATTCTTATGGAACAACAATCACATTGAGAATCTGATAATGCAA 1741
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 GTTGCAGAGAGAGCTTTATTCTTATGGAACAACAATCACATTGAGAATCTGATAATGCAG 1333
Query 1742 AACCGTAAAGTCATTCTTCCAATTATATTCCCAGCGTTGGAGAGAAACGCACAGAAACAT 1801
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 1334 AACCGTAAAGTCATTCTTCCAATTATATTCCCTGCATTGGAGAGAAATGCACAGAAACAT 1393
Query 1802 TGGAACCAAGCTGTTCATAGCTTGACACTAAACGTGCGAAAGATATTTCATGACCTTGAC 1861
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1394 TGGAACCAAGCTGTTCATAGCTTGACACTAAACGTACGAAAGATATTTCATGACCTTGAC 1453
Query 1862 CCTGAGTTATTTAAAGAATGCCTCGCAAAGTTCAAGGAAGATGAATCAAAAGCAGCTGAA 1921
|||||||| || ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1454 CCTGAGTTGTTCAAAGAATGCCTTGCTAAGTTCAAGGAAGATGAATCAAAAGCAGCTGAA 1513
Query 1922 ACCGAAGCAAAACGTGAAGCCACTTGGAAACGTTTGGAAGAACTCGGAGTGCGAAAGGCT 1981
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1514 ACCGAAGCAAAACGTGAAGCCACTTGGAAACGATTGGAAGAACTCGGTGTGCGAAAGGCT 1573
Query 1982 TCATAAAGTTAGAGTTGTagagaaga 2007
|||||||||||||| | |||| ||||
Sbjct 1574 TCATAAAGTTAGAGCTATAGACAAGA 1599
Score = 351 bits (190), Expect = 9e-96
Identities = 205/212 (97%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 1328 CACA-AATTTGTGGAAAAGGATTGCAAACTTGCTGATACGGTTATAAGAGGATTGTTGAA 1386
|||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1063 CACACAGTTTGTGGAAAAGGATTGCAAACTTGCTGATACAGTTATAAGAGGATTGTTGAA 1122
Query 1387 ATATTGGCCCGTGACAAACAGTTCCAAAGAAGTCATGTTTCTGAACGAGTTGGAGGAAGT 1446
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1123 ATATTGGCCAGTGACAAATAGTTCCAAAGAAGTCATGTTTCTGAATGAGTTGGAGGAAGT 1182
Query 1447 ACTCGAAGCAACTCAGCCACCAGAATTTCAACGGTGCATGGTACCACTGTTTCGCCAAAT 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 ACTCGAAGCAACTCAGCCACCAGAATTTCAACGGTGCATGGTACCACTGTTTCGCCAAAT 1242
Query 1507 AGCTCGATGTTTGAACAGTCTGCATTTTCAGG 1538
||| ||||||||||||||||||||||||||||
Sbjct 1243 AGCCCGATGTTTGAACAGTCTGCATTTTCAGG 1274
> Ahg471504 jgi|Araly1|471504|fgenesh2_kg.1__1458__AT1G13460.2
Length=1927
Score = 721 bits (390), Expect = 0.0
Identities = 583/678 (86%), Gaps = 6/678 (1%)
Strand=Plus/Plus
Query 659 TTTACTCCTTATGAAGCATTGCCGAGTTTTAAAGATGTTCCAAACACGGAAAAGCAAAAC 718
||||| || ||||||||||||||| ||||||||||||||||||| | |||||||| |||
Sbjct 499 TTTACGCCGTATGAAGCATTGCCGGGTTTTAAAGATGTTCCAAATGCAGAAAAGCAGAAC 558
Query 719 TTGTTCATTAAAAAGTTGAACTTGTGCCGTGTAGTGTTTGATTTCACGGATCCTACAAAG 778
||||| | |||||| | ||||||||| ||||| ||| |||||| ||||||| || |||
Sbjct 559 TTGTTTGTGAAAAAGCTCAACTTGTGCTGTGTACCGTTCGATTTCTCGGATCCAACGAAG 618
Query 779 AACATCAAGGAAAAAGATATTAAGAGGCAGACATTGCTGGAGCTTGTGGATTATGTGAAT 838
||| | |||||||| || |||||| ||||||||||||| |||||||||||||||||| |
Sbjct 619 AACGTTAAGGAAAAGGAGATTAAGCGGCAGACATTGCTTGAGCTTGTGGATTATGTGGCT 678
Query 839 TCTCCTAATGGAAAGTTTAGCGAAGTCGG-TATCCAAGAAGTCGTTCGGATGGTCTCTGC 897
||||| ||||||||||| |||||| ||| ||| |||||||| ||| | ||||| ||||
Sbjct 679 TCTCCCAATGGAAAGTTCAGCGAA-ACGGTTATTCAAGAAGTGGTTAGAATGGTTTCTGT 737
Query 898 TAACATATTTAGAACGC-TAAATCCTCAACCACGGGAAAATAAAGTTATCGATGCCTTAG 956
||| ||||| ||||| | | ||||||||||| || || ||||||||||| ||||||||||
Sbjct 738 TAATATATTCAGAAC-CTTGAATCCTCAACCGCGCGAGAATAAAGTTATTGATGCCTTAG 796
Query 957 ACCTGGAGGAGGAAGAACCTTCCATGGATCTTGCGTGGCCTCACTTGCAGCTTGTGTATG 1016
|| ||||||| ||||| ||||| ||||||| | |||||||||||||||||||||| ||||
Sbjct 797 ACGTGGAGGAAGAAGAGCCTTCTATGGATCCTACGTGGCCTCACTTGCAGCTTGTCTATG 856
Query 1017 AGCTTTTCTTGAGGTTTGTTGCTTCGCCTGAAACTGACACCAAGCTGGCTAAGAGATATA 1076
|| || || || || || ||||||| || || || ||||||||||||||||||| ||| |
Sbjct 857 AGATTCTCCTGCGGCTTATTGCTTCACCCGAGACAGACACCAAGCTGGCTAAGAAATACA 916
Query 1077 TAGATCAATCTTTTGTCTTGCGGTTACTGGATTTATTTGATTCCGAGGATCCTAGAGAAA 1136
| || ||||||||||||| ||| |||| |||||||||||||||||||||||||||||||
Sbjct 917 TTGACCAATCTTTTGTCTCACGGATACTTGATTTATTTGATTCCGAGGATCCTAGAGAAA 976
Query 1137 GAGATTGTCTGAAAACCATTCTCCATCGGATCTATGGTAAATTTATGGTACACCGACCTT 1196
|||||||||| || ||| |||| ||||| ||||| |||||||||||||| || || ||||
Sbjct 977 GAGATTGTCTTAAGACCGTTCTACATCGCATCTACGGTAAATTTATGGTTCATCGTCCTT 1036
Query 1197 TCATCAGGAAATCCATTAACAACATCTTCTATAGGTTTGTTTTCGAAACAGAGAAACATA 1256
|||| |||||||||||||||||||| |||||| ||||||||||||| || ||||||||||
Sbjct 1037 TCATAAGGAAATCCATTAACAACATTTTCTATCGGTTTGTTTTCGAGACTGAGAAACATA 1096
Query 1257 ATGGGATTGCTGAGTTTCTAGAAATCTTGGGAAGTATCATCAATGGATTCGCTCTTCC-C 1315
| |||||||||||||||||||| || ||||||||||||||||||||||| ||||| || |
Sbjct 1097 ACGGGATTGCTGAGTTTCTAGAGATTTTGGGAAGTATCATCAATGGATTTGCTCTGCCGC 1156
Query 1316 TTGAAAGACGAGCACAAA 1333
|| ||||| ||||| |||
Sbjct 1157 TT-AAAGATGAGCATAAA 1173
Score = 235 bits (127), Expect = 1e-60
Identities = 184/212 (87%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 1328 CACA-AATTTGTGGAAAAGGATTGCAAACTTGCTGATACGGTTATAAGAGGATTGTTGAA 1386
|||| | ||||||||||| ||||||||||||||||||||||||||||||||| | | ||
Sbjct 1254 CACACAGTTTGTGGAAAAAGATTGCAAACTTGCTGATACGGTTATAAGAGGACTACTCAA 1313
Query 1387 ATATTGGCCCGTGACAAACAGTTCCAAAGAAGTCATGTTTCTGAACGAGTTGGAGGAAGT 1446
| ||||||||| ||||| ||||||||||||||||||||||| |||||| | ||||||||
Sbjct 1314 GTCTTGGCCCGTCACAAATAGTTCCAAAGAAGTCATGTTTCTAAACGAGCTAGAGGAAGT 1373
Query 1447 ACTCGAAGCAACTCAGCCACCAGAATTTCAACGGTGCATGGTACCACTGTTTCGCCAAAT 1506
| | ||||||||||| ||||||||||| || || || ||||| || ||||||||||| |
Sbjct 1374 ATTAGAAGCAACTCAACCACCAGAATTCCAGCGATGTATGGTCCCGTTGTTTCGCCAAGT 1433
Query 1507 AGCTCGATGTTTGAACAGTCTGCATTTTCAGG 1538
||||| |||||||||||||| ||||||||||
Sbjct 1434 TGCTCGGTGTTTGAACAGTCTCCATTTTCAGG 1465
Score = 65.8 bits (35), Expect = 1e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 389 TAAGAAACTATGTGGAAACAGATTCTAAGTAAGCTTCC 426
||| ||||||||||||||||||||||||||||||||||
Sbjct 283 TAATAAACTATGTGGAAACAGATTCTAAGTAAGCTTCC 320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85512600025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5