BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26020.4 Length=2271 Score E Sequences producing significant alignments: (Bits) Value Ahg936295 jgi|Araly1|936295|scaffold_500486.1 1472 0.0 Ahg471504 jgi|Araly1|471504|fgenesh2_kg.1__1458__AT1G13460.2 721 0.0 > Ahg936295 jgi|Araly1|936295|scaffold_500486.1 Length=1602 Score = 1472 bits (797), Expect = 0.0 Identities = 924/982 (94%), Gaps = 22/982 (2%) Strand=Plus/Plus Query 374 TTCTGGTGTTGAGAATAAG-AAACTATGTGGAAACAGATTCTAAGTAAGCTTCCCAACAA 432 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 1 TTCTGGTGTTGAGAATAAGAAAACTATGTGGAAACAGATTCTAAGTAAGCTTCCTAACAA 60 Query 433 AAAGTCTTCAAAGCACGAACATCGTGGACGTGAACACGGTGGCCATTCTTCTTCATCTTC 492 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAAGTCTTCTAAGCACGAACATCGTGGACGTGAACACGGTGGCCATTCTTCTTCATCTTC 120 Query 493 TCATACTTCAGGTGCCTCTACTTCCAAAAGCACTGATAATGG---C--G----CCGCGAA 543 ||||||||| | |||||||||||| |||| || ||||||||| | | | | ||| Sbjct 121 TCATACTTCTGCTGCCTCTACTTCGAAAAACAGTGATAATGGTACCGGGAAATCAGGGAA 180 Query 544 ATCGCATGCTAAGAACGCTTCTCCAGCCGGCAAATCCGCTGCTTCTGACTCGGGTTTTAA 603 |||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||| Sbjct 181 TTCGCATGCTAAGAACGCTTCAGCAGGTGGGAAATCCGCTGCTTCTGACTCGGGTTATAA 240 Query 604 AGATGGGAATCTAAAGAGTAGT-GG-G--a-a-caac-a-a-caac-a-a-caacaacaa 651 ||||||||||||||||| |||| || | | | |||| | | |||| | | ||||||||| Sbjct 241 AGATGGGAATCTAAAGAATAGTGGGAGCAACAGCAACAACAGCAACAACAGCAACAACAA 300 Query 652 cGGTGTCTTTACTCCTTATGAAGCATTGCCGAGTTTTAAAGATGTTCCAAACACGGAAAA 711 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGGAGTCTTTACTCCTTATGAAGCATTGCCGAGTTTTAAAGATGTTCCAAACACGGAAAA 360 Query 712 GCAAAACTTGTTCATTAAAAAGTTGAACTTGTGCCGTGTAGTGTTTGATTTCACGGATCC 771 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 361 GCAAAACTTGTTCATAAAAAAGTTGAACTTGTGCCGTGTAGTGTTTGATTTCACAGATCC 420 Query 772 TACAAAGAACATCAAGGAAAAAGATATTAAGAGGCAGACATTGCTGGAGCTTGTGGATTA 831 ||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || Sbjct 421 TACAAAGAATATCAAGGAAAAAGAGATTAAGAGGCAGACATTACTGGAGCTTGTGGACTA 480 Query 832 TGTGAATTCTCCTAATGGAAAGTTTAGCGAAGTCGGTATCCAAGAAGTCGTTCGGATGGT 891 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 481 TGTGAATTCTCCTAATGGAAAGTTTAGCGAAGTGGGTATCCAAGAAGTCGTTCGGATGGT 540 Query 892 CTCTGCTAACATATTTAGAACGCTAAATCCTCAACCACGGGAAAATAAAGTTATCGATGC 951 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 541 CTCTGCTAACATATTTAGAACGCTAAATCCTCAACCACGGGAAAATAAAGTTATTGATGC 600 Query 952 CTTAGACCTGGAGGAGGAAGAACCTTCCATGGATCTTGCGTGGCCTCACTTGCAGCTTGT 1011 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 601 CTTAGACCTGGAGGAGGAAGAACCTTCCATGGATCTTGCATGGCCTCACTTGCAGCTTGT 660 Query 1012 GTATGAGCTTTTCTTGAGGTTTGTTGCTTCGCCTGAAACTGACACCAAGCTGGCTAAGAG 1071 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 661 GTATGAGCTTTTCTTGAGGTTTGTTGCTTCGCCTGAAACTGACACCAAGTTGGCGAAGAG 720 Query 1072 ATATATAGATCAATCTTTTGTCTTGCGGTTACTGGATTTATTTGATTCCGAGGATCCTAG 1131 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 721 ATATATAGATCAATCTTTTGTCTTGCGGTTGCTCGATTTATTTGATTCCGAGGATCCTAG 780 Query 1132 AGAAAGAGATTGTCTGAAAACCATTCTCCATCGGATCTATGGTAAATTTATGGTACACCG 1191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AGAAAGAGATTGTCTGAAAACCATTCTCCATCGGATCTATGGTAAATTTATGGTACACCG 840 Query 1192 ACCTTTCATCAGGAAATCCATTAACAACATCTTCTATAGGTTTGTTTTCGAAACAGAGAA 1251 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 841 ACCTTTCATCAGGAAATCCATAAACAACATCTTCTATAGGTTTGTTTTCGAAACAGAGAA 900 Query 1252 ACATAATGGGATTGCTGAGTTTCTAGAAATCTTGGGAAGTATCATCAATGGATTCGCTCT 1311 |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| Sbjct 901 ACATAACGGGATTGCTGAGTTTCTTGAAATCTTGGGTAGTATCATCAATGGATTTGCTCT 960 Query 1312 TCCCTTGAAAGACGAGCACAAA 1333 |||||||||||||||||||||| Sbjct 961 TCCCTTGAAAGACGAGCACAAA 982 Score = 525 bits (284), Expect = 5e-148 Identities = 312/326 (96%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 1682 GTTGCAGAGAGAGCTTTATTCTTATGGAACAACAATCACATTGAGAATCTGATAATGCAA 1741 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1274 GTTGCAGAGAGAGCTTTATTCTTATGGAACAACAATCACATTGAGAATCTGATAATGCAG 1333 Query 1742 AACCGTAAAGTCATTCTTCCAATTATATTCCCAGCGTTGGAGAGAAACGCACAGAAACAT 1801 |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct 1334 AACCGTAAAGTCATTCTTCCAATTATATTCCCTGCATTGGAGAGAAATGCACAGAAACAT 1393 Query 1802 TGGAACCAAGCTGTTCATAGCTTGACACTAAACGTGCGAAAGATATTTCATGACCTTGAC 1861 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1394 TGGAACCAAGCTGTTCATAGCTTGACACTAAACGTACGAAAGATATTTCATGACCTTGAC 1453 Query 1862 CCTGAGTTATTTAAAGAATGCCTCGCAAAGTTCAAGGAAGATGAATCAAAAGCAGCTGAA 1921 |||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1454 CCTGAGTTGTTCAAAGAATGCCTTGCTAAGTTCAAGGAAGATGAATCAAAAGCAGCTGAA 1513 Query 1922 ACCGAAGCAAAACGTGAAGCCACTTGGAAACGTTTGGAAGAACTCGGAGTGCGAAAGGCT 1981 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 1514 ACCGAAGCAAAACGTGAAGCCACTTGGAAACGATTGGAAGAACTCGGTGTGCGAAAGGCT 1573 Query 1982 TCATAAAGTTAGAGTTGTagagaaga 2007 |||||||||||||| | |||| |||| Sbjct 1574 TCATAAAGTTAGAGCTATAGACAAGA 1599 Score = 351 bits (190), Expect = 9e-96 Identities = 205/212 (97%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 1328 CACA-AATTTGTGGAAAAGGATTGCAAACTTGCTGATACGGTTATAAGAGGATTGTTGAA 1386 |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1063 CACACAGTTTGTGGAAAAGGATTGCAAACTTGCTGATACAGTTATAAGAGGATTGTTGAA 1122 Query 1387 ATATTGGCCCGTGACAAACAGTTCCAAAGAAGTCATGTTTCTGAACGAGTTGGAGGAAGT 1446 ||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1123 ATATTGGCCAGTGACAAATAGTTCCAAAGAAGTCATGTTTCTGAATGAGTTGGAGGAAGT 1182 Query 1447 ACTCGAAGCAACTCAGCCACCAGAATTTCAACGGTGCATGGTACCACTGTTTCGCCAAAT 1506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1183 ACTCGAAGCAACTCAGCCACCAGAATTTCAACGGTGCATGGTACCACTGTTTCGCCAAAT 1242 Query 1507 AGCTCGATGTTTGAACAGTCTGCATTTTCAGG 1538 ||| |||||||||||||||||||||||||||| Sbjct 1243 AGCCCGATGTTTGAACAGTCTGCATTTTCAGG 1274 > Ahg471504 jgi|Araly1|471504|fgenesh2_kg.1__1458__AT1G13460.2 Length=1927 Score = 721 bits (390), Expect = 0.0 Identities = 583/678 (86%), Gaps = 6/678 (1%) Strand=Plus/Plus Query 659 TTTACTCCTTATGAAGCATTGCCGAGTTTTAAAGATGTTCCAAACACGGAAAAGCAAAAC 718 ||||| || ||||||||||||||| ||||||||||||||||||| | |||||||| ||| Sbjct 499 TTTACGCCGTATGAAGCATTGCCGGGTTTTAAAGATGTTCCAAATGCAGAAAAGCAGAAC 558 Query 719 TTGTTCATTAAAAAGTTGAACTTGTGCCGTGTAGTGTTTGATTTCACGGATCCTACAAAG 778 ||||| | |||||| | ||||||||| ||||| ||| |||||| ||||||| || ||| Sbjct 559 TTGTTTGTGAAAAAGCTCAACTTGTGCTGTGTACCGTTCGATTTCTCGGATCCAACGAAG 618 Query 779 AACATCAAGGAAAAAGATATTAAGAGGCAGACATTGCTGGAGCTTGTGGATTATGTGAAT 838 ||| | |||||||| || |||||| ||||||||||||| |||||||||||||||||| | Sbjct 619 AACGTTAAGGAAAAGGAGATTAAGCGGCAGACATTGCTTGAGCTTGTGGATTATGTGGCT 678 Query 839 TCTCCTAATGGAAAGTTTAGCGAAGTCGG-TATCCAAGAAGTCGTTCGGATGGTCTCTGC 897 ||||| ||||||||||| |||||| ||| ||| |||||||| ||| | ||||| |||| Sbjct 679 TCTCCCAATGGAAAGTTCAGCGAA-ACGGTTATTCAAGAAGTGGTTAGAATGGTTTCTGT 737 Query 898 TAACATATTTAGAACGC-TAAATCCTCAACCACGGGAAAATAAAGTTATCGATGCCTTAG 956 ||| ||||| ||||| | | ||||||||||| || || ||||||||||| |||||||||| Sbjct 738 TAATATATTCAGAAC-CTTGAATCCTCAACCGCGCGAGAATAAAGTTATTGATGCCTTAG 796 Query 957 ACCTGGAGGAGGAAGAACCTTCCATGGATCTTGCGTGGCCTCACTTGCAGCTTGTGTATG 1016 || ||||||| ||||| ||||| ||||||| | |||||||||||||||||||||| |||| Sbjct 797 ACGTGGAGGAAGAAGAGCCTTCTATGGATCCTACGTGGCCTCACTTGCAGCTTGTCTATG 856 Query 1017 AGCTTTTCTTGAGGTTTGTTGCTTCGCCTGAAACTGACACCAAGCTGGCTAAGAGATATA 1076 || || || || || || ||||||| || || || ||||||||||||||||||| ||| | Sbjct 857 AGATTCTCCTGCGGCTTATTGCTTCACCCGAGACAGACACCAAGCTGGCTAAGAAATACA 916 Query 1077 TAGATCAATCTTTTGTCTTGCGGTTACTGGATTTATTTGATTCCGAGGATCCTAGAGAAA 1136 | || ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| Sbjct 917 TTGACCAATCTTTTGTCTCACGGATACTTGATTTATTTGATTCCGAGGATCCTAGAGAAA 976 Query 1137 GAGATTGTCTGAAAACCATTCTCCATCGGATCTATGGTAAATTTATGGTACACCGACCTT 1196 |||||||||| || ||| |||| ||||| ||||| |||||||||||||| || || |||| Sbjct 977 GAGATTGTCTTAAGACCGTTCTACATCGCATCTACGGTAAATTTATGGTTCATCGTCCTT 1036 Query 1197 TCATCAGGAAATCCATTAACAACATCTTCTATAGGTTTGTTTTCGAAACAGAGAAACATA 1256 |||| |||||||||||||||||||| |||||| ||||||||||||| || |||||||||| Sbjct 1037 TCATAAGGAAATCCATTAACAACATTTTCTATCGGTTTGTTTTCGAGACTGAGAAACATA 1096 Query 1257 ATGGGATTGCTGAGTTTCTAGAAATCTTGGGAAGTATCATCAATGGATTCGCTCTTCC-C 1315 | |||||||||||||||||||| || ||||||||||||||||||||||| ||||| || | Sbjct 1097 ACGGGATTGCTGAGTTTCTAGAGATTTTGGGAAGTATCATCAATGGATTTGCTCTGCCGC 1156 Query 1316 TTGAAAGACGAGCACAAA 1333 || ||||| ||||| ||| Sbjct 1157 TT-AAAGATGAGCATAAA 1173 Score = 235 bits (127), Expect = 1e-60 Identities = 184/212 (87%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 1328 CACA-AATTTGTGGAAAAGGATTGCAAACTTGCTGATACGGTTATAAGAGGATTGTTGAA 1386 |||| | ||||||||||| ||||||||||||||||||||||||||||||||| | | || Sbjct 1254 CACACAGTTTGTGGAAAAAGATTGCAAACTTGCTGATACGGTTATAAGAGGACTACTCAA 1313 Query 1387 ATATTGGCCCGTGACAAACAGTTCCAAAGAAGTCATGTTTCTGAACGAGTTGGAGGAAGT 1446 | ||||||||| ||||| ||||||||||||||||||||||| |||||| | |||||||| Sbjct 1314 GTCTTGGCCCGTCACAAATAGTTCCAAAGAAGTCATGTTTCTAAACGAGCTAGAGGAAGT 1373 Query 1447 ACTCGAAGCAACTCAGCCACCAGAATTTCAACGGTGCATGGTACCACTGTTTCGCCAAAT 1506 | | ||||||||||| ||||||||||| || || || ||||| || ||||||||||| | Sbjct 1374 ATTAGAAGCAACTCAACCACCAGAATTCCAGCGATGTATGGTCCCGTTGTTTCGCCAAGT 1433 Query 1507 AGCTCGATGTTTGAACAGTCTGCATTTTCAGG 1538 ||||| |||||||||||||| |||||||||| Sbjct 1434 TGCTCGGTGTTTGAACAGTCTCCATTTTCAGG 1465 Score = 65.8 bits (35), Expect = 1e-09 Identities = 37/38 (97%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 389 TAAGAAACTATGTGGAAACAGATTCTAAGTAAGCTTCC 426 ||| |||||||||||||||||||||||||||||||||| Sbjct 283 TAATAAACTATGTGGAAACAGATTCTAAGTAAGCTTCC 320 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85512600025 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5