BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26030.1
Length=2161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484365 jgi|Araly1|484365|fgenesh2_kg.5__357__AT3G26030.1 3323 0.0
> Ahg484365 jgi|Araly1|484365|fgenesh2_kg.5__357__AT3G26030.1
Length=2131
Score = 3323 bits (1799), Expect = 0.0
Identities = 2053/2168 (95%), Gaps = 48/2168 (2%)
Strand=Plus/Plus
Query 2 TGCCAACGAAGCAATAGCTATGAAAAGCTAAACCCTTTCcttcttcttcttcttcttctt 61
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TGCCAACGAAGCAATAGCTATGAAAAGCTAAACCCTTT-CTTCTTCTTCTTCTTCTTCTT 59
Query 62 cttcttcGATTGTTTAGATTACTTGGGTTTGACCCAAGTTTGCTTCTTTCTATGATTCAT 121
||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 60 CTTCTTCAATTGTTTAGATCACTTGGGTCAAACCCAAGTCTGCTTCTTTCTATGATTCAT 119
Query 122 CAATCTAGATCTTGCTATCTGGGTCCAGAAACGATTCACGCGCTTCATTCATGATATAAA 181
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 120 CAATCTAGATCTTCCTATCTGGGTCCAGAAACGATTCACGCGCTTCGTTCATGATATAAA 179
Query 182 GTTACTACCttttttttattttaccttctgggtcatggttttgtctgcttttcgtctttt 241
||||||||| |||| | || |||||||||||||||| |||||||||||||||||||
Sbjct 180 GTTACTACC----TTTT-TCTT-GCTTCTGGGTCATGGTTCTGTCTGCTTTTCGTCTTTT 233
Query 242 gcttttgtctGGATGATTCA-TAATCTCTCGAGATCTATTATGTTCACAAGAGTTGTTCT 300
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 234 GCTTTTGTCTGGATGATTCATTAATCTCT-GAGATCTAGTATGTTCACAAGAGTTGTTCT 292
Query 301 TATGCGTGGTGAGATGATCTTAGGAGT-GTTTCACTATCTTTCTTCAATTCGGGTTTTTA 359
||||||||||||||||||||||||||| | |||| |||||||||||||||||| |||| |
Sbjct 293 TATGCGTGGTGAGATGATCTTAGGAGTAG-TTCAGTATCTTTCTTCAATTCGGATTTTGA 351
Query 360 GTTTCTGAGATCTG---TTTTTG----AAGAATCTGATCTGAGTTTGAGGAAGTTTGACT 412
|||||||||||||| |||||| ||||||| |||||||||||||||||| |||||
Sbjct 352 GTTTCTGAGATCTGTTTTTTTTGCTTAAAGAATCCGATCTGAGTTTGAGGAAG-TTGACC 410
Query 413 AA-ATAGATCGAAGAAGATGTTTAAGCAGATACTTGGGAAGCTTCCTAAGAAAACTTCTG 471
|| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 411 AATATAGATC---GAAGATGTTTAAGCAGATACTTGGGAAGCTTCCTAAGAAAACCTCTG 467
Query 472 CTAAGTTTTGGGATAATGGTGAATCCCAAACTCTAGATAACAACAACAATCAAGGAGGAG 531
|||||||||||||||||||||| |||||||||| |||| |||||||||| | |||||
Sbjct 468 CTAAGTTTTGGGATAATGGTGACTCCCAAACTCCAGAT---AACAACAATC-A--AGGAG 521
Query 532 GTGATGAAGTTTTAAGCCAGAGAACGTCATCAAATGGAGATACTAGTTTGGATTGTGTTT 591
||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |
Sbjct 522 GTGATGAAGTTTTAAGCCAGAGATCATCATCAAATGGAGATAC---TTTGGATTGTG--T 576
Query 592 CTTCTTTTGATGTATTGCCAAGGTTGAGAGATGTTTCCATCTCTGAGAAGCAAGAACTGT 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 -TTCTTTTGATGTATTGCCAAGGTTGAGAGATGTTTCCATCTCTGAGAAGCAAGAACTGT 635
Query 652 TTCTTAAGAAGCTTAGACTATGTTGTCTAGTGTTTGATTTTGTAGCTGAGCCTCAACAGA 711
|||||||||||||||||||||||||| | |||||||||||||| || |||||||||||||
Sbjct 636 TTCTTAAGAAGCTTAGACTATGTTGTGTTGTGTTTGATTTTGTCGCCGAGCCTCAACAGA 695
Query 712 ACTTCAAGGAGAAAGAGATCAAAAGGCAAACACTTCTTGAAGTTGTGGATTATGTTATCT 771
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 696 ACTTCAAGGAGAAAGAGATTAAAAGGCAAACACTTCTTGAAGTTGTGGATTATGTTATCT 755
Query 772 CTTCAGGGAATGGCAAGTTCCCTGAATCAGTTATTCAAGAAGCTACCAAGATGATTTCGG 831
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 756 CTTCAGGGAATGGCAAGTTTCCTGAATCAGTTATTCAAGAAGCTACGAAGATGATTTCGG 815
Query 832 CGAATCTCTTTAGTAATCCTCATCGACAATGGAAGAACAAAACTCCTGAGGCATTGGATT 891
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 816 CGAATCTCTTTAGTAATCCTCATCGACAATGGAAGAACAAAACTCCTGAAGCATTGGATT 875
Query 892 TGGAAGAAGAAGAAGGATCTTTGAATCCTTCTTGGCCTCACTTGCAGATTGTTTATGAGT 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 TGGAAGAAGAAGAAGGATCTTTGAATCCTTCTTGGCCTCACTTGCAGATTGTTTATGAGT 935
Query 952 TCCTTTTGAGAATCGTTGCATCTCCCAACACAGACCCCAAGATATCCAAGAAATACATCG 1011
||||| | |||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 936 TCCTTCTAAGAATCGTCGCGTCTCCCAACACTGACCCCAAGATATCCAAGAAATACATCG 995
Query 1012 ATCATACATTCGTTCTCAAGCTATTGGATTTGTTTGATTCTGAAGATCCGAGGGAAAGAG 1071
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 996 ATCATACATTCGTTCTCAAGCTATTGGATTTGTTTGACTCTGAAGATCCGAGGGAAAGAG 1055
Query 1072 AGTATCTGAAAACGATACTTCACCGCATCTACGGGAGGTTTATGGTTCATCGCCCGTTCA 1131
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1056 AGTATCTGAAAACGATACTTCACCGGATCTACGGGAGGTTTATGGTTCATCGCCCGTTCA 1115
Query 1132 TCAGGAAAACTATGAACAACATCTTGTATGATTTTATATTCGAGACAGGGAAACACTCGG 1191
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1116 TCAGGAAAACTATGAACAACATCTTGTATGATTTTATATTCGAGACCGGGAAACACTCAG 1175
Query 1192 GAATCGCCGAGTTTCTTGAAGTTTTAGGATCCATCATCAATGGATTCGCTTTACCACTCA 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 GAATCGCCGAGTTTCTTGAAGTTTTAGGATCCATCATCAATGGATTCGCTTTACCACTCA 1235
Query 1252 AGGAAGAACACAAGCTCTTTCTTACTCGTGTCTTGATTCCTCTGCACAAGCTGAAATGCT 1311
||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1236 AGGAAGAACACAAGCTCTTCCTTACTCGTGTCTTGATTCCTCTACACAAACTGAAATGCT 1295
Query 1312 TACCAAATTACCATCAACAGCTTTCTTACTGCGTTATACAGTTTGTTGAGAAAGATTGTA 1371
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1296 TACCAAATTACCATCAGCAGCTTTCTTATTGCGTTATACAGTTTGTTGAGAAAGATTGTA 1355
Query 1372 AGCTCGCGGATACCGTTATTAGAGGGATGTTGAAGTACTGGCCTGTTACTAATAGCGCTA 1431
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1356 AGCTCGCGGATACCGTTATTAGAGGGATGTTGAAGTACTGGCCTGTTACTAATAGCTCTA 1415
Query 1432 AAGAAATCATGTTCTTGAATGAATTGGAGGAGATACTAGAAGCAACTCAATTAACAGAGT 1491
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1416 AAGAAATCATGTTCTTGAATGAATTGGAGGAGATATTAGAAGCAACTCAATTAACAGAGT 1475
Query 1492 TTGAACGGTGTATGGTTCCGCTCTCTCGCCAAATTGCTCAGTGCTTGAGCAGTTCTCACT 1551
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1476 TTGAACGGTGTATGATTCCGCTCTCTCGCCAAATTGCTCAGTGCTTAAGCAGTTCTCACT 1535
Query 1552 TTCAGGTAGCGGAACGGGCTTTATACTTATGGAACAACGATCATGTCACTAATTTAGTGA 1611
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1536 TTCAGGTAGCAGAACGGGCTTTATACTTATGGAACAACGATCATGTCACTAATTTGGTGA 1595
Query 1612 GACAGAACAGTAGAATCATTTTACCTATAGTGTTTCCCGCTTTGGAGAAAAACGGTAGCA 1671
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1596 GACAGAACAGTAGAATCATTTTACCGATAGTGTTTCCCGCTTTGGAGAAAAACGGTAGCA 1655
Query 1672 GCCATTGGAATCAGGCTGTGAAGAACTTGACAGAGAATGTTCTCAAGGTTTTGTCCGATA 1731
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1656 GCCATTGGAATCAGGCTGTGAAGAACTTGACCGAGAATGTTCTCAAGGTTTTGTCGGATA 1715
Query 1732 CAAATCCTGATTTATTCGAAGAATGTTTGCACAAGTTCCAAGAAGATCAGCAAAAAGCAG 1791
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1716 CAAATCCAGATTTATTCGAAGAATGTTTGCGCAAGTTCCAAGAAGATCAGCAAAAAGCAG 1775
Query 1792 AAGATACTAAAAAGAAGAATGGAGAAACCTGGAGACAGCTAGAGGAGATTGTTGCTTCAA 1851
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1776 AAGATACTAAAAAGAAGAATGGAGAAACCTGGAAACAGCTAGAGGAGATTGTTGCTTCAA 1835
Query 1852 TGGCGAAGTAAGAGTTTTTTCTGCACTTTACGTGATTCAACAAGAAATCGGTTTATTGTT 1911
||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||||
Sbjct 1836 TGGCGAAGTAAGAGTTTTT-CTGCACTTTACGCGATGCAACAAGAA-TCGGTTTATTGTT 1893
Query 1912 TTGTTTTGTTTCCTTTACGCCTGAAAGGTATATACATTTACTTTGCTTTGCTTGCTTCAT 1971
||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1894 TTGTTTT----C-TTTACGCCTGAAAGGTATATACATTTACTTTGCTTTGATTGCTTCA- 1947
Query 1972 TTAAGTATCTGGTTTCGACTTTAAGACTAGTTTAATTCAGTTAAACAGTGTGAGATTTTA 2031
| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1948 --A-GTCTCTGGTTTCGACTTCAAGACTAGTTTAATTCAGTTAAACAGTGTGAGATTTTA 2004
Query 2032 CCTTTTTCAGTTCTTGATTTGTCTGTATACTTGGTTCATGTAAACATCTTGTTATGAAAA 2091
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2005 CCTCTTTCAGTTCTTGATTTGTCTGTATACTTCGTTCATGTAAACATCTTGTTATGAAAA 2064
Query 2092 CACGAATTTTCTATTGTCTGAAGTCACTTAGTTTATCAG-TGAAAGAGATTGCTCTAATA 2150
||||||| ||||||||| |||||||||||||||||| || |||||||||| |||||||||
Sbjct 2065 CACGAATATTCTATTGTTTGAAGTCACTTAGTTTAT-AGGTGAAAGAGATGGCTCTAATA 2123
Query 2151 TAAAAATT 2158
| ||||||
Sbjct 2124 TTAAAATT 2131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81322673075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5