BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26040.1
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484366 jgi|Araly1|484366|fgenesh2_kg.5__358__AT3G26040.1 2106 0.0
> Ahg484366 jgi|Araly1|484366|fgenesh2_kg.5__358__AT3G26040.1
Length=1329
Score = 2106 bits (1140), Expect = 0.0
Identities = 1270/1333 (95%), Gaps = 8/1333 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGTTGATGTTGTCTCCAGAGATATCATCAAACCATCATCTCCAACTCCAAACCAC 60
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAGAGTTGATGTTATCTCCAGAGATATCATCAAACCGTCATCTCCAACTCCAAACCAC 60
Query 61 TTAAAGAAGTTTAAACTCTCTCTTTTAGAACAGCTCGGTCCAACGATCTTTGGTCCTATG 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAAAGAAGTTTCAACTCTCTCTTTTAGAACAGCTCGGTCCAACGATCTTTGGTCCTATG 120
Query 121 GTTTTCTTCTATTCAGCTAACAACAGCATCAAACCAACTGAGCAATTGCAGATGCTGAAG 180
|||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||||||
Sbjct 121 GTTTTCTTCTATTCAGGTAACAACAGAATCAAACCAGCTGAGCAATTGCAGAAGCTGAAG 180
Query 181 AAGTCGTTATCCGAAACTTTAACTCATTTCTACCCTCTCGCTGGACGGCTCAAAGGCAAC 240
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGTCGTTATCTGAAACTTTAACCCATTTCTACCCTCTCGCTGGACGGCTCAAAGGCAAC 240
Query 241 ATAAGTATCGATTGTAATGACTCAGGCGCTGATTTCCTCGAAGCACG-AGTCAATTCACC 299
||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||
Sbjct 241 ATAAGTATCGATTGTAATGACTCCGGCGCTGATTTCCTCGAAGCA-GAAGTCAATTCCCC 299
Query 300 GCTTTCGAATCTCCTACTAGAGCCTTCTTCTGACAGCTTGCAACAACTGATTCCTACATC 359
|||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 GCTTTCGAGTCTCCTACAAGAGCCTTCTTCGGACAGCTTGCAACAACTGATTCCTACATC 359
Query 360 TGTTGATTCCATAGAGACACGAACCAGACTGCTTCTTGCTCAAGCGAGTTTCTTTGAATG 419
|||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||
Sbjct 360 AGTTGATTCCATAGAGACAAGAACCAGACTGTTTCTTGCTCAAGCTAGTTTCTTTGAATG 419
Query 420 TGGAAGCATGTCTATAGGAGTTTGTATCTCTCATAAACTCGCTGACGCAACTTCTATCGG 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGAAGCATGGCTATAGGAGTTTGTATCTCTCATAAACTCGCTGACGCAACTTCTATCGG 479
Query 480 TTTATTCATGAAGAGCTGGGCTGCAATCTCGTCCCGAGGGTCGATCAAAACCATTGGAG- 538
||||||||||||||||||||||||||||||||||| ||| || ||||||||| |||| |
Sbjct 480 TTTATTCATGAAGAGCTGGGCTGCAATCTCGTCCCAAGGATCAATCAAAACCGTTGG-GT 538
Query 539 CTCCGGT-TTTCGACACGGTTAAGATCTTCCCACCTGGAAACTTCTCTGAGACTTCCCCT 597
||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCCAGTGTTT-GACACGGCCAAGATCTTCCCACCTGGAAACTTCTCTGAGACTTCCCCT 597
Query 598 GCACCAGTGGTTGAGCCAGAGATCATGATGAATCAGACTCTTTCGAAGAGATTCATATTC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 598 GCACCAGTGGTTGAGCCAGAGATCATGATGAATCAGACTCTTTCGAAGAGATTTGTATTC 657
Query 658 GATTCTTCGAGTATTCAAGCTCTGCAAGCGAAAGCTTCAAGCTTTGAAGTGAATCAACCA 717
||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 658 GATTCTTCGAGCATTCAAGCCCTGCAAGCAAAAGCTTCAAGCTTTGAAGTGAATCAACCT 717
Query 718 ACAAGAGTCGAAGCTGTTTCAGCTCTTATATGGAAATCTGCAATGAAAGCTACAAGAACA 777
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 718 ACAAGAGTCGAAGCTGTTTCAGCTCTTATATGGAAAACTGCAATGAAAGCTACAAGAACA 777
Query 778 GTTTCAGGAACATCGAAACCGTCAATTCTGGCAAACTCCGTGAGTCTACGCTCACGAGTC 837
||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| |||
Sbjct 778 GTTTCAGGAACATCGAAACCGTCGATTCTGGCTAACTCCGCGAGTCTACGCTCACGCGTC 837
Query 838 TCTCCACCATTTACAAAGAACTCAATAGGGAATCTAGTGAGCTACTTTGCAGCAAAAGCA 897
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 838 TCTCCACCATTCACAAAGAACTCAATCGGGAATCTAGTGAGCTACTTTGCAGCAAAAGCA 897
Query 898 GAGGAAGGAATAAACCAAACAAAGCTTCAAACTTTGGTTTCGAAAATACGAAAAGCGAAA 957
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GAGGAAGGAACAAACCAAACAAAGCTTCAAACTTTGGTTTCGAAAATACGAAAAGCGAAA 957
Query 958 CAGAGGTTTCGAGATATCCATATACCAAAGCTTGTAGGAAACCCAAATGCCACAGAGATC 1017
||| ||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 CAGTGGTTTCGCGATAACCATATACCAAAGCTTGTAGGAAACCCAAATGCTACAGAGATC 1017
Query 1018 ATTTGTAGCTACCAGAAAGAAGCAGGAGATATGATTGCAAGTGGAGATTTCGATTTCTAC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ATTTGTAGCTACCAGAAAGAAGCAGGAGATATGATTGCAAGTGGAGATTTCGATTTCTAC 1077
Query 1078 ATATTCTCAAGTGCTTGTCGATTCGGTTTATACGAAACCGATTTCGGTTGGGGAAAACCG 1137
|| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1078 ATCTTCTCGAGTGCTTGTCGGTTCGGTTTATACGATACCGATTTCGGTTGGGGAAAACCG 1137
Query 1138 GTTTGGGTCGGGTTTCCTTCGGTTAGACAGAAGAACATCGTGACGCTTCTCGACACGAAA 1197
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GTTTGGGTCGGGATTCCTACGGTTAGACAGAAGAACATCGTGACGCTTCTCGACACGAAA 1197
Query 1198 GAAGCTGGTGGAATTGAAGCTTGGGTGAATCTGA-ATGAACAAGAGATGAATCTTTTTGA 1256
|||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1198 GAAGCTGGTGGAATCGAAGCTTGGGTGAATCT-ATATGAACAAGAGATGAATCTTTTTGA 1256
Query 1257 ACAAGATAGAGAATTGCTCCAATTCGCTTCTCTGAATCCTAGTGTGATCCAACCTTTTCT 1316
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1257 ACAAGATAGAGAATTGCTCCAATTCGCTTCTCTGAATCCTAGGGTGATCCAACCTTTTCT 1316
Query 1317 TCATGTTCTCTGA 1329
|||||||| |||
Sbjct 1317 CCATGTTCTTTGA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49750406685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5