BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26050.1
Length=2038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484367 jgi|Araly1|484367|fgenesh2_kg.5__359__AT3G26050.1 2104 0.0
> Ahg484367 jgi|Araly1|484367|fgenesh2_kg.5__359__AT3G26050.1
Length=1947
Score = 2104 bits (1139), Expect = 0.0
Identities = 1780/2062 (86%), Gaps = 154/2062 (7%)
Strand=Plus/Plus
Query 1 ACTTTCAGATTTGCAGCCAAAGAAAAAGAAGCTAACAAAGATTTTTCAGTTTTCAGTTTC 60
|||||||||||||||||| | |||||||| ||||||||| |||||||||||||
Sbjct 1 ACTTTCAGATTTGCAGCC---G---AAGAAGCT--TTAAGATTTTTTAGTTTTCAGTTTC 52
Query 61 TCAGCGAAACCACCAGATTTGGGGATAAAATTAGGGTTTTTCGATCTCCAGAGAAAACaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct 53 TCAGCGAAACCACCAGATTTGGGGATAAAATTAGGGTTTTTGGATCTCC--AG--AACAA 108
Query 121 aaaa-aaTGGGAGAATCAATTTGTC-TTGTGAGATCTTTCTCGCAACCTTCAGAGTTTTC 178
|||| |||||||||||||||||| | |||||||||||||||||||| || ||||||||||
Sbjct 109 AAAAGAATGGGAGAATCAATTTG-CTTTGTGAGATCTTTCTCGCAAGCTGCAGAGTTTTC 167
Query 179 ATCGCGTGAAAT---CAACGAGGTGGTACCGAATCGAGTGCTTACGGAATCAGTATCGTT 235
||||| | |||| |||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 168 ATCGCATCAAATCAACAACGAGGTGGTTCCTAATCGTGTGCTTACGGAATCGGTATCGTT 227
Query 236 TGGTAGATATGCGAATGAAACACTAGCGTGGGCGAGATGGTCAGCTTTTACTCAGAATCG 295
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 228 TGGTAGATTTGCGAATGAAACACTAGCGTGGGAGAGATGGTCAGCTTTTACTCAGAATCG 287
Query 296 TTACTTGGAAGAGGTTGAGAGGTTTACTAAACCTGGTTCTGTAGCAGAGAAGAAAGCTTT 355
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 288 TTACTTGGAAGAGGTTGAGAGGTTTACTAAACCTGGTTCTGTGGCTCAGAAGAAAGCTTT 347
Query 356 CTTTGAAGCTCATTTCAAGAACCGAGCTTCAGGGAAAGCAGCAACACAGACGAAGAAGAT 415
|||||||||||||||||||||| ||||||| ||| || || ||| || |||| |||||
Sbjct 348 CTTTGAAGCTCATTTCAAGAACAGAGCTTCCGGG--AG-AGTAACGGAGCCGAAAAAGAT 404
Query 416 TGAACAAGTAAAGGTT-AAAGATAGTGTTGAGATTGTTTGTGATATACCTAAGGATATTC 474
| ||| || ||| ||| ||| ||||||||| ||||| ||||| ||||||||||
Sbjct 405 CG---AAG--AA-GTTGAAA-CCGGTGATGAGATTGTATGTGAGATACCAAAGGATATTC 457
Query 475 TCGTTGATTCAGAAGTACCACTAGCGGTGAATAGAGAGGTGTCTAGTAATGAGGTGGACT 534
||||||||||||||||| || | | | || |||||||| |||||||||
Sbjct 458 TCGTTGATTCAGAAGTA--AC-A-C------T--AGTGGTGTCTAACGGTGAGGTGGA-- 503
Query 535 CTGTTGTTCCATCAATTTCTGTAATAGATG-AAACTGGTAAAGTGGAGAACTTGAAGTCA 593
|| | ||| ||| || | || |||||||| ||||||||||||||||||||
Sbjct 504 ----TG---AAACAA---CTG--AT-G-TGAAAACTGGTGAAGTGGAGAACTTGAAGTCA 549
Query 594 GTGGTTGTTCCTGATGAGGGCAATTCTACTTCTTTGAGCAAAGAAAGACCTCCTAGTTCT 653
| || || | |||||||||||||||||||||||||||||||||||||||
Sbjct 550 ------G----TG--GA--G-AATTCTACTTCTTTGAGCAAAGAAAGACCTCCTAGTTCT 594
Query 654 TCCGGATCGAAGGTCTCAAGCTCAAAACTGGAATCTTCCGTTGTTATAGAACTGGATCAT 713
|| | ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 595 TCTGAATCGAAGGTCTCAAGTTCAAAACTGGAACCTTCCGTTGTTATAGAACTGGATCAT 654
Query 714 TCACTTAAGAACACTAAAAAAGAGTCATCCTCGAGTAGTACAAGGTCACTTAGTGCATCG 773
|||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 655 TCACTTAACAACACTAGAAAAGAGTCATCCTTGAGTAGTACAAGGTCACTTAGTGTATCG 714
Query 774 AAGAACCGAAGTAGATCACCTCCTGAGCCCATTCACATGTCAATCAGCTGTGTTTCTTCT 833
|||||||||||||||||||||||| | || ||||||||||||||||||||| | |||||
Sbjct 715 AAGAACCGAAGTAGATCACCTCCTCAATCCGTTCACATGTCAATCAGCTGTGCTCCTTCT 774
Query 834 AGTAATACCGAGAAAACTATTGTGGGGAGGCCCCAGAACGGTTCTAGGAGTGCAGTGAAA 893
||| |||||| |||| ||||| ||| |||||| |||||| ||| |||||||||||||
Sbjct 775 GGTAGTACCGACAAAAAAATTGTCAGGATGCCCCAAAACGGTGCTAAGAGTGCAGTGAAA 834
Query 894 GCAGACAAGAAGAAGAGATCAGGTCCAAGTTCAGTTCACATGTCACTCAATTTTGCTTCT 953
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 835 GCAGACAAGAAGAAGAGATCATGTCCAAGTTCAGTTCACATGTCACTCAATTTTGCTTCT 894
Query 954 TCTACTCTTCGTACGACCAAAGAAGCCCCAAAAACACT-GGCAAGAAACTCCACTACACA 1012
||| ||| || ||||||||||| |||| | ||||| || || ||||||||||||||||||
Sbjct 895 TCTGCTCGTCATACGACCAAAGCAGCCTCGAAAAC-CTTGGTAAGAAACTCCACTACACA 953
Query 1013 GGGAACAACTTCAACAAATGCTAGAAACAAACTTTTCCCAAAGATAAACGAACCAACGGG 1072
|| |||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 954 GGAAACAACTTCATCAAATGCTAGAAACAAAGTTTTCCCAAAGACAAACGAACCAACGGG 1013
Query 1073 AGCTTTAAAAAGCTGCAAGAGACCATTGTCTCAGACATCCAAAGACGGTTC-AA--C--C 1127
||||| ||||||| ||||||||||||||||||| ||||||||||| ||||| || | |
Sbjct 1014 AGCTTCAAAAAGCCGCAAGAGACCATTGTCTCAAACATCCAAAGAAGGTTCTAAAGCTGC 1073
Query 1128 AA--TG--C--C---T-C-T--GCTGTCACGTTACCCAGA-CTTCCTCTTCTCAGTAATC 1173
|| || | | | | | ||||||||||||||| || ||||||| ||||||||| |
Sbjct 1074 AAAATGTTCAACCAGTGCCTCTGCTGTCACGTTACCC-GAACTTCCTCCTCTCAGTAAGC 1132
Query 1174 TGCTATCAGAAAACAAAAGGAAAAACATATCTGTAAGGAG-TTCAGTTTCATGTAGAATA 1232
|||||||||||||||||||||||||||| ||||| |||| || | ||||||| ||||||
Sbjct 1133 AGCTATCAGAAAACAAAAGGAAAAACATAACTGTAGGGAGATTAA-TTTCATGCAGAATA 1191
Query 1233 TCCAACAATGAGCAAAGAA-AACCTTCTGTCGGCTGTGAAAATCTGTCAACTCATAGCAG 1291
||||||||| ||||| || |||| ||||||||||||||||||| ||||||||||||||
Sbjct 1192 CCCAACAATGTGCAAA-AACAACCCCCTGTCGGCTGTGAAAATCTTTCAACTCATAGCAG 1250
Query 1292 AACCAAAGCAAAGTCTTTGACTGTATCTTCTCCCTTCGTCTTCAGAAGTGATGAAAGGGC 1351
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1251 AAGCAAAGCAAAGTCTTTGACTGTATCTTCTCCCTTCATCTTCAGAAGTGATGAAAGAGC 1310
Query 1352 AGAGAAGAGGAAAGAGTTCTTCAAGAAAGTAGAGGaaaaaaaCAAGAAAGAG-AAA--G- 1407
||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||| |
Sbjct 1311 AGAGAAGAGGAAAGAGTTCTTCAAGAAGGTAGAAGAAAAGAACAAGAAAGAGGAAACTGG 1370
Query 1408 AG--GATAAATTTTCTTGCGGCTTCAAGGCAAATCAAAACACTAACTTAGCATCTGAAGA 1465
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1371 AAAAGATAAATTTTCTTGCGGCTTCAAGGCAAATCAAAACACTCACTTAGCATCTGAAGA 1430
Query 1466 ACACAAGAA---CCCACAAGTTGGTGGTTTTCAGGTAACACCGATGACCCTGACTTCACC 1522
||||||||| ||||||||||||||||||||||||| ||||||| ||| ||||||||||
Sbjct 1431 ACACAAGAAGAACCCACAAGTTGGTGGTTTTCAGGTACCACCGATAACCATGACTTCACC 1490
Query 1523 AAGATTCCGCAGGAACCAAACTCCAGGAAAAGAGAACATaaaaaaaCCTCATCAAACTCC 1582
||||||||||||||||||||||||||||||| |||||||||||| | || | | |
Sbjct 1491 AAGATTCCGCAGGAACCAAACTCCAGGAAAAAAGAACATAAAAA--C-TC--C---C-C- 1540
Query 1583 TCATAAAGCTTCCTCAATGAAGATCATCAACACCAAAAAAGTAGTCATGGAGAAGCACAA 1642
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 1541 --ATAAAGCTTCCTCAATGAAGATCATAAACACCAAAAAAGTAGTCATGGAGAAACAAAA 1598
Query 1643 AAGCAGCAAGATCCATCCCTCCTCCAAAC-AGCAGACAACAAAAAGAACTCAAGAAAATA 1701
|||||||||||| |||||||||||||||| | |||||| |||||| ||||||||||||||
Sbjct 1599 AAGCAGCAAGATTCATCCCTCCTCCAAACCA-CAGACACCAAAAAAAACTCAAGAAAATA 1657
Query 1702 TGTCTCCTAATATTCTTCAGAACTAACCAGAGACAAACCAGATCAATCGATTCCTCTTCT 1761
|||||||||||||||| ||||||||| |||||||||||| |||||||| |||||||||||
Sbjct 1658 TGTCTCCTAATATTCTACAGAACTAAGCAGAGACAAACCCGATCAATC-ATTCCTCTTCT 1716
Query 1762 TCAAGTCTCTAGATCATCGTAAAGATTCGACTTTTCACTTTGAAGATTCCGAAAGTTTTG 1821
|||| |||||| |||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct 1717 TCAAACCTCTAGTTCATCGTAAAGATTCGGCTTTTCGCGTTGAAGATTCCGAAAGTTTTG 1776
Query 1822 TCCCTTCAGCTAGTAATCTCATCTCAAGCTTATGGTTTAGGTGACTAGCCCTTGATTCAG 1881
||| ||||||| |||||||||||||||||||||||| ||||| |||||||||| | |
Sbjct 1777 TCCTTTCAGCTCGTAATCTCATCTCAAGCTTATGGTATAGGTAACTAGCCCTT-A---A- 1831
Query 1882 ATTGTGTAACCACAAGCTTTTAAGGAGCTGTGTAGAATAGATAGAACTCAAGTCTACTTA 1941
||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1832 -TTG---AACCACAAGCTTTTAAGGAGCTGTGTAGAATAGATAGAACTCAA--CTA-T-- 1882
Query 1942 CTCTTCAAAGTAACTATGTACTCAATAGTTCTGTAGTATCAATCTTGTATCATTTGTATA 2001
||| || | ||||||||||| || ||||||||||||||||||| ||
Sbjct 1883 ---------GTA-CT-----C--AATAGTTCTGTTGTCTCAATCTTGTATCATTTGTCTA 1925
Query 2002 CATAGAGATTTGAAATAAAGAA 2023
||||||||| ||||||||||||
Sbjct 1926 CATAGAGATATGAAATAAAGAA 1947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76637572940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5