BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26060.2
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484368 jgi|Araly1|484368|fgenesh2_kg.5__360__AT3G26060.1 1282 0.0
> Ahg484368 jgi|Araly1|484368|fgenesh2_kg.5__360__AT3G26060.1
Length=875
Score = 1282 bits (694), Expect = 0.0
Identities = 836/900 (93%), Gaps = 27/900 (3%)
Strand=Plus/Plus
Query 33 TTCTTCTACTAC-ATGCTCTAATCACGTCCTTGTAGAGGAAAAGaaaaaaaaTGGCTGCT 91
|||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTCTACT-CTATGCTCTAACCACGTCCTTGTAGAGGAAAAGAAAAAAAATGGCTGCT 59
Query 92 TCATCTTCCTCTTTCACTCTCTGTAATCACACCACACTTCGTACTCTCCCTCTGAGAAAG 151
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 60 TCATCTTCCTCTTTCACTCTCTGTAATCACACCACACTTCACACTCTCCCTCAGAGAAAG 119
Query 152 ACCCTTGTCACCAAAACCCAATTTTCAGTTCCCACAAAATCATCAGAATCTAACTTCTTT 211
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 120 ACCCTTGTCACCAAAACCCATTTTTCCGTTCCCACAAAATCATCAGAATCTAATTTCTTT 179
Query 212 GGCTCCACACTCACTCACTCATCGTATATCTCCCCAGTCTCTTCCTCTTCTCTCAAAGGC 271
||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| ||
Sbjct 180 GGCTCCAGACTCACTCACTCGTCGTATCTCTCCCCAGTCTCTTCCTCTTCTCTCAAAAGC 239
Query 272 TTAATCTTTGCCAAGCAGGTTAACAAGGGTCAGGCTGCACCAGACTTCACACTAAAGGAT 331
|||||||||||| | ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 240 TTAATCTTTGCC-A--AGGTTAACAAGGGTCAGGCTGCACCAGACTTCACATTGAAGGAT 296
Query 332 CAAAACGGAAAGCCGGTGAGCCTCAAAAAGTATAAAGGGAAGCCTGTTGTTCTCTACTTC 391
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAGAACGGAAAGCCGGTGAGCCTCAAAAAGTATAAAGGGAAGCCTGTTGTTCTCTACTTC 356
Query 392 TACCCTGCAGATGAAACCCCTGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTAT 451
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 357 TACCCTGCAGATGAAACCCCTGGCTGCACCAAACAGGCTTGTGCTTTCAGAGACTCTTAT 416
Query 452 GAGAAATTCAAGAAAGCTGGTGCAGAGGTCATTGGCATTAGTGGAGATGACTCTGCTTCT 511
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 417 GAGAAATTCAAGAAAGCCGGTGCAGAGGTCATTGGGATTAGTGGTGATGACTCTGCTTCT 476
Query 512 CACAAGGCGTTTGCAAGCAAATACAAACTACCGTATACATTGTTAAGCGACGAAGGGAAT 571
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 CACAAGGCGTTTGCAAGCAAATACAAACTCCCGTATACATTGTTAAGCGACGAAGGGAAT 536
Query 572 AAGGTGAGAAAAGATTGGGGAGTGCCTGGAGACCTGTTTGGAGCATTGCCAGGGAGACAG 631
||||||||||||||||||||||| || |||||| ||||||| |||||||||||||||||
Sbjct 537 AAGGTGAGAAAAGATTGGGGAGTACCAGGAGACTTGTTTGGGGCATTGCCAGGGAGACAA 596
Query 632 ACTTACGTTCTTGACAAAAACGGTGTTGTTCAGCTCATCTACAACAACCAGTTCCAGCCT 691
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ACTTACGTCCTTGACAAAAACGGTGTTGTTCAGCTCATCTACAACAACCAGTTCCAGCCT 656
Query 692 GAGAAACACATCGACGAGACCTTGAAGTTTCTCAAAGCTGCTTGATCAttctctctttct 751
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 657 GAGAAACACATCGACGAGACCTTGAAGTTTCTTAAAGCTGCTTGATCATTCTCTCTTTCT 716
Query 752 cttctttctcttctttcATGCATGTCTCATGTCTGTCTCCATGAGACCATGACCTTCTTA 811
||| |||||||||||||||||| |||||||| || | || | |
Sbjct 717 CTT--------------ATGCATGTCTCATGTCTGGCTCCATGA--CCTT--CC--C--A 754
Query 812 TATTGTTTCTGTTGAGTATGAATTTTCAATAATACCATGTTATACCAATGAGAAGGGAGT 871
|| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 755 TACTGTTTCTTTTGATTATGAATTTTCAATAATACCATGTTATACCAATGAGAAGAGAGT 814
Query 872 TGGCTTTGGTCTAGTACAAAGATCACAACAGGATAAGTACTGAAGTGTGGTTAAAATGTT 931
|||||||||||| ||| |||||||||||| ||||||||| ||||| ||||||||||||||
Sbjct 815 TGGCTTTGGTCTGGTAAAAAGATCACAACGGGATAAGTATTGAAGAGTGGTTAAAATGTT 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5