BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26070.1
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484369 jgi|Araly1|484369|fgenesh2_kg.5__361__AT3G26070.1 1539 0.0
Ahg484370 jgi|Araly1|484370|fgenesh2_kg.5__362__AT3G26080.1 883 0.0
> Ahg484369 jgi|Araly1|484369|fgenesh2_kg.5__361__AT3G26070.1
Length=1190
Score = 1539 bits (833), Expect = 0.0
Identities = 1050/1148 (91%), Gaps = 41/1148 (4%)
Strand=Plus/Plus
Query 1 CACCGAGGGCCTCTCGTTTCATGAGAGA-A-ACAAAAAATCTTATCTTTCTGACAACGGT 58
|||||||||||||||||||||||||||| | | |||||||||||||||| ||||| ||||
Sbjct 1 CACCGAGGGCCTCTCGTTTCATGAGAGAGAGAAAAAAAATCTTATCTTTGTGACAGCGGT 60
Query 59 GGTGGTGTGTGATGTTGTCAGCCATGGCAAAGACAGAGCTACAACGAtctctctctcttt 118
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 61 GGTGGTGTGTGATGTTGTCAGCCATGGCAAAGACAGAGCAACAACGA--TCTCTCTCTTT 118
Query 119 tcttcttcttctgtgtctgtctttaaatagagtctctttGAAACGAAGCAGCTTTGTCCT 178
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 119 TC-CCTTCTTCTGTGTCTGTCTTTAAACAGAGTCTCTTTGAAACGAAGCAGCTTTGTCCT 177
Query 179 GTTCTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGCTTTAATGTCTCCGGCC 238
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 178 GTTTTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGGTTTAATGTCTCCGGCC 237
Query 239 ACTGGATTTAATTTTTCCGGCAGTCTTATGAAGTCAGACAGCGGCTTCGCCGTTCCGACA 298
||||| |||||| ||||||||||||| ||||||| ||||| || || |||||||||| |
Sbjct 238 ACTGGTTTTAATCTTTCCGGCAGTCTGATGAAGTTGGACAGTGGTTTTGCCGTTCCGATA 297
Query 299 AAGTTACAGAGTACTCGAAAAGGTGATCGAGAGAGATTGAGAGTCCAAGCTATTTTCAGT 358
||||||||||||| |||||||||||||||||| ||||||||| |||||||| | ||||||
Sbjct 298 AAGTTACAGAGTAATCGAAAAGGTGATCGAGAAAGATTGAGAATCCAAGCTGTCTTCAGT 357
Query 359 TTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAACAGAAACAGCTCAAACAA 418
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 TTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAGCAGAAACAGCTCAAACAA 417
Query 419 GAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCCTCGCCTGATGACCAG 478
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 418 GAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCTTCACCTGATGACCAG 477
Query 479 CTTCGGATTGATCAGTTAGCGCGTAAAGTGGAAGCAGTTAATCCCACCAAGGAGCCTTTG 538
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 478 CTACGTATTGATCAGTTAGCGCGTAAAGTGGAAGCTGTTAATCCCACCAAGGAGCCTCTG 537
Query 539 AAGTCTGATTTGGTCAATGGAAAATGGGAGCTCATTTATACAACCTCTGCTTCGATTTTG 598
|| ||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 538 AAATCTGATTTGATCAATGGAAAATGGGAACTCATTTATACAACTTCTGCTTCGATTTTG 597
Query 599 CAGGCAAAGAAACCAAGGTTCTTAAGATCAATAACCAACTACCAATCTATCAATGTGGAT 658
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAGGCAAAGAAACCGAGGTTCTTAAGATCAATAACCAACTACCAATCTATCAATGTGGAT 657
Query 659 ACACTTAAGGTGCAAAACATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGACATA 718
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 658 ACACTGAAGGTGCAAAACATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGACCTG 717
Query 719 AAACCCCTCAATTCGAAGAAGGTTGCTGTGAAACTCCAAGTGTTTAAAATTCTCGGATTT 778
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 718 AAACCCCTCAATTCGAAGAAAGTTGCTGTGAAACTCCAAGTGTTTAAAATTCTCGGCTTT 777
Query 779 ATTCCTATAAAAGCACCTGATAGCGCCCGCGGTGAACTTGAGATTACCTATGTGGACGAG 838
|||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 778 ATTCCTGTAAAAGCACCTGATAGCGCACGCGGTGAACTAGAGATTACTTATGTGGACGAA 837
Query 839 GAACTACGGTTATCAAGAGGTGACAAAGGGAACTTGTTTATATTGAAGATGTTTGATCCC 898
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 838 GAACTACGGTTATCAAGGGGTGACAAAGGGAACTTGTTTATATTGAAGATGTTCGATCCC 897
Query 899 ACTTATCGAATCCCTCTTTGATCTACCAAACAAATGGTACCGAGCCATCCATCATACATA 958
||||||||||||||||| |||||| || | | | |||||||||||||||
Sbjct 898 ACTTATCGAATCCCTCTCTGATCT-CC--------G--A--G--CCATCCATCATACAT- 941
Query 959 CTTGCTACAACTTGCTATGTCTCTCTTCATCATGTATGTAATCTAACATAAGAAA-AATT 1017
| | | | | || || || ||||||||||||||||||||||| ||| ||||
Sbjct 942 -T-G-T-C---T--CT----CT-TC---ATCATGTATGTAATCTAACATAA-AAATAATT 983
Query 1018 AATAAGAGGGAA-AAAATGAGACGAGCTTCTGTCATTGTTTCAACTTGTTCAAATCAAAG 1076
|||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 984 AATAAGAGGGAATAAAAAGAGACGAGCTTTTGTCATTTTTTCAACTTGTTCAAATCAAAG 1043
Query 1077 ATTCTGAATCTTGATTTGGTTGAGCAGTTAGTTCCAATCCTAAACTATGTGATGCTCAAG 1136
||||||||||||||||||||||| ||||| | |||||||||||||||| |||| || ||
Sbjct 1044 ATTCTGAATCTTGATTTGGTTGAACAGTTGGCTCCAATCCTAAACTATATGATACTGAAT 1103
Query 1137 CAGTACAA 1144
||||||||
Sbjct 1104 CAGTACAA 1111
> Ahg484370 jgi|Araly1|484370|fgenesh2_kg.5__362__AT3G26080.1
Length=936
Score = 883 bits (478), Expect = 0.0
Identities = 670/759 (88%), Gaps = 27/759 (4%)
Strand=Plus/Plus
Query 171 TTTGTCCTGTTCTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGCTTTAATG- 229
||||||||||| |||||| |||||||||||||| || |||||||||||||| |||||||
Sbjct 196 TTTGTCCTGTTTTGATATTCATGGCTTTACCTTGGTACTTAAAGACTGGAGTTTTAATGT 255
Query 230 -T-CTCCGGCCACTGGATTTAATTTTTCC-GGCAGTCTTATGAAGTCAGACAGCGGCTTC 286
| |||||||| | |||||| | | |||| |||||||||||||||| ||||| |||||
Sbjct 256 CTCCTCCGGCCGCCGGATTT-AGTCTTCCAGGCAGTCTTATGAAGTTGGACAGTGGCTTT 314
Query 287 GCCGTTCCGACAAAGTTACAGAGTACTCGAAAAGGTGATCGAGAGAGATTGAGAGTCCAA 346
|||||||||| ||||||||||| || ||| ||||||||||| || ||||||||| |||||
Sbjct 315 GCCGTTCCGAAAAAGTTACAGAATATTCGTAAAGGTGATCGGGAAAGATTGAGAATCCAA 374
Query 347 GCTATTTTCAGTTTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAACAGAAA 406
||| ||||||| || | | | || |||||||||||| | | ||||| | ||||
Sbjct 375 GCTGTTTTCAGCTT---T-C--C---TC---CAAGAAACGGTCAAACCGAGAAGCGGAAA 422
Query 407 CAGCTCAAACAAGAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCCTCG 466
||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 423 CAGCTCAAACAGGAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCACG 482
Query 467 CCTGATGACCAGCTTCGGATTGATCAGTTAGCGCGTAAAGTGGAAGCAGTTAATCCC-AC 525
|||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| ||| ||
Sbjct 483 CCTGATGATCAGCTTCGGATTGATCAGTTAGCACGTAAGGTGGAAGCAG-TAAACCCAAC 541
Query 526 CAAGGAGCCTTTGAAGTCTGATTTGGTCAATGGAAAATGGGAGCTCATTTATACAACCTC 585
||| |||||| |||| |||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 542 CAATGAGCCTCTGAAATCTGATTTAATCAATGGGAAATGGGAGCTCATTTATACAACATC 601
Query 586 TGCTTCGATTTTGCAGGCAAAGAAACCAAGGTTCTTAAGATCAATAACCAACTACCAATC 645
|||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 602 TGCTGCGATTTTGCAAGCAAAGAAACCAAGGTTCTTAAGATCAATAACAAACTACCAATG 661
Query 646 TATCAATGTGGATACACTTAAGGTGCAAA-ACATGGAGACTTGGCCTTTCTATAACTCGG 704
||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 662 TATCAATATGGATACACTAAAGGTGCAAAGA-ATGGAGACTTGGCCTTTCTATAACTCGG 720
Query 705 TAACTGGAGACATAAAACCCCTCAATTCGAAGAAGGTTGCTGTGAAACTCCAAGTGTTTA 764
|||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 TAACTGGAGATTTGACGCCCCTCAATTCCAAGAAGGTTGCTGTGAAACTCCAAGTGTTTA 780
Query 765 AAATTCTCGGATTTATTCCTATAAAAGCACCTGATAGCGCCCGCGGTGAACTTGAGATTA 824
|||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 781 AAATTCTCGGCTTTATTCCTGTAAAAGCACCTGATAGCGCCCGCGGTGAACTAGAGATTA 840
Query 825 CCTATGTGGACGAGGAACTACGGTTATCAAGAGGTGACAAAGGGAACTTGTT-T--ATAT 881
| ||||||||||||||||||||| ||||||| || | |||||| |||||||| | ||||
Sbjct 841 CTTATGTGGACGAGGAACTACGGATATCAAG-GG-G-CAAAGGCAACTTGTTGTTTATAT 897
Query 882 TGAAGATGTTTGATCCCACTTATCGAATCCCTCTTTGAT 920
|||||||||| ||||||||||||||||||||||| ||||
Sbjct 898 TGAAGATGTTCGATCCCACTTATCGAATCCCTCTCTGAT 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48721087926
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5