BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26080.1 Length=1021 Score E Sequences producing significant alignments: (Bits) Value Ahg484370 jgi|Araly1|484370|fgenesh2_kg.5__362__AT3G26080.1 1229 0.0 Ahg484369 jgi|Araly1|484369|fgenesh2_kg.5__361__AT3G26070.1 813 0.0 > Ahg484370 jgi|Araly1|484370|fgenesh2_kg.5__362__AT3G26080.1 Length=936 Score = 1229 bits (665), Expect = 0.0 Identities = 839/918 (91%), Gaps = 32/918 (3%) Strand=Plus/Plus Query 40 aaaaaaaCCTTATCTTTGTGACTTTCGGTGGTGTGTGTGATGTTGTTGTCGGTCATGGCG 99 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 24 AAAAAAATCTTATCTTTGTGACTTTCGGTGGTGTGTGTGATGTTGTTGTCGGCCATGGCG 83 Query 100 AAGACAGAGCTACGATCTCTCTCTTTTTCCTCTCTTATGTGTCTA---T----CTTCGAA 152 |||||||||| |||||||||||||||||||| |||||||||| || | ||||||| Sbjct 84 AAGACAGAGCAACGATCTCTCTCTTTTTCCT-TCTTATGTGTTTATCTTCGGACTTCGAA 142 Query 153 CAGAGTCTCTCAGAAACGACCCAGCCACTCTTTAAAACTCCATTGGAAAAGC--TTTGTC 210 ||||||||||| ||||||| |||| |||| || |||||||||||||||| | |||||| Sbjct 143 CAGAGTCTCTCTGAAACGAAGCAGCGACTC-TTGAAACTCCATTGGAAAAACTTTTTGTC 201 Query 211 CTGTTTTGATATCCATGGCTTTACCTTGGTGCTTAAAGACTGGAGTTTTAACG--T-CTC 267 |||||||||||| ||||||||||||||||| |||||||||||||||||||| | | ||| Sbjct 202 CTGTTTTGATATTCATGGCTTTACCTTGGTACTTAAAGACTGGAGTTTTAATGTCTCCTC 261 Query 268 CGGCCGCCGGATTTAATCAT-C---CA-TC----------GGACAGTGGCTTCGCCGTTC 312 ||||||||||||||| || | | || || |||||||||||| ||||||| Sbjct 262 CGGCCGCCGGATTTAGTCTTCCAGGCAGTCTTATGAAGTTGGACAGTGGCTTTGCCGTTC 321 Query 313 CGACGAAGTTACTGAGTATTCGAAAAGGTGATCGGGAAAGATTGAGAATCCAAGCTGTTT 372 ||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 322 CGAAAAAGTTACAGAATATTCGTAAAGGTGATCGGGAAAGATTGAGAATCCAAGCTGTTT 381 Query 373 TCAGCTTTCCTCCAAGAAACGGTGGAGCCGAGAAGCGGAAACAGCTCAAACATGAACTTG 432 ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| Sbjct 382 TCAGCTTTCCTCCAAGAAACGGTCAAACCGAGAAGCGGAAACAGCTCAAACAGGAACTTC 441 Query 433 TCGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCTCGCCTGATGATCAGCTTCTGA 492 | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 442 TTGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCACGCCTGATGATCAGCTTCGGA 501 Query 493 TTGATCAGTTAGCACGTAAGGTGGAAGCAGTAAACCCAACCAAGGAGCCTCTGAAGTCTG 552 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 502 TTGATCAGTTAGCACGTAAGGTGGAAGCAGTAAACCCAACCAATGAGCCTCTGAAATCTG 561 Query 553 ATTTGATCAATGGGAAATGGGAGCTCATTTACACAACATCTGCTGCGATTTTGCAAGCAA 612 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 562 ATTTAATCAATGGGAAATGGGAGCTCATTTATACAACATCTGCTGCGATTTTGCAAGCAA 621 Query 613 AGAAACCAAGGTTCTTAAGATCGTTAACTAACTACCAATGTATCAATATGGATACACTAA 672 |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 622 AGAAACCAAGGTTCTTAAGATCAATAACAAACTACCAATGTATCAATATGGATACACTAA 681 Query 673 AGGTGCAAAGAATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGACTTGACACCCC 732 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 682 AGGTGCAAAGAATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGATTTGACGCCCC 741 Query 733 TCAACTCGAAGACGGTTGCTGTGAAACTTCAAGTGTTTAAAATTCTCGGCTTTATTCCGG 792 |||| || |||| ||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 742 TCAATTCCAAGAAGGTTGCTGTGAAACTCCAAGTGTTTAAAATTCTCGGCTTTATTCCTG 801 Query 793 TAAAAGCACCTGATGGTACTGCACGCGGTGAACTAGAGATTACCTATGTGGACGAGGAAC 852 |||||||||||||| | | || |||||||||||||||||||| |||||||||||||||| Sbjct 802 TAAAAGCACCTGATAG--C-GCCCGCGGTGAACTAGAGATTACTTATGTGGACGAGGAAC 858 Query 853 TACGGATATCAAGGGGCAAAGGCAACTTGTTGTTTATATTGAAGATGTTTGATCCCACTT 912 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 859 TACGGATATCAAGGGGCAAAGGCAACTTGTTGTTTATATTGAAGATGTTCGATCCCACTT 918 Query 913 ATCGAATCCCTCTCTGAT 930 |||||||||||||||||| Sbjct 919 ATCGAATCCCTCTCTGAT 936 > Ahg484369 jgi|Araly1|484369|fgenesh2_kg.5__361__AT3G26070.1 Length=1190 Score = 813 bits (440), Expect = 0.0 Identities = 663/764 (87%), Gaps = 42/764 (5%) Strand=Plus/Plus Query 202 AGCTTTGTCCTGTTTTGATATCCATGGCTTTACCTTGGTGCTTAAAGACTGGAGTTTTAA 261 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 167 AGCTTTGTCCTGTTTTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGGTTTAA 226 Query 262 CGTCTCCGGCCGCCGGATTTAATC-AT-C--CA-TC----------GGACAGTGGCTTCG 306 |||||||||| | || ||||||| | | || || ||||||||| || | Sbjct 227 TGTCTCCGGCCACTGGTTTTAATCTTTCCGGCAGTCTGATGAAGTTGGACAGTGGTTTTG 286 Query 307 CCGTTCCGACGAAGTTACTGAGTATTCGAAAAGGTGATCGGGAAAGATTGAGAATCCAAG 366 ||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||| Sbjct 287 CCGTTCCGATAAAGTTACAGAGTAATCGAAAAGGTGATCGAGAAAGATTGAGAATCCAAG 346 Query 367 CTGTTTTCAGCTT---T-C--C---TC---CAAGAAACGGTGGAGCCGAGAAGCGGAAAC 414 |||| ||||| || | | | || ||||||||||| |||| ||||||| ||||| Sbjct 347 CTGTCTTCAGTTTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAGCAGAAAC 406 Query 415 AGCTCAAACATGAACTTGTCGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCTCGC 474 |||||||||| |||||| | ||||||||||||||||||||||||||||| || || || | Sbjct 407 AGCTCAAACAAGAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCTTCAC 466 Query 475 CTGATGATCAGCTTCTG-ATTGATCAGTTAGCACGTAAGGTGGAAGCAG-TAAACCCAAC 532 ||||||| ||||| | | |||||||||||||| ||||| |||||||| | ||| ||| || Sbjct 467 CTGATGACCAGCTAC-GTATTGATCAGTTAGCGCGTAAAGTGGAAGCTGTTAATCCC-AC 524 Query 533 CAAGGAGCCTCTGAAGTCTGATTTGATCAATGGGAAATGGGAGCTCATTTACACAACATC 592 ||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| || Sbjct 525 CAAGGAGCCTCTGAAATCTGATTTGATCAATGGAAAATGGGAACTCATTTATACAACTTC 584 Query 593 TGCTGCGATTTTGCAAGCAAAGAAACCAAGGTTCTTAAGATCGTTAACTAACTACCAATG 652 |||| |||||||||| ||||||||||| |||||||||||||| |||| |||||||||| Sbjct 585 TGCTTCGATTTTGCAGGCAAAGAAACCGAGGTTCTTAAGATCAATAACCAACTACCAATC 644 Query 653 TATCAATATGGATACACTAAAGGTGCAAAGA-ATGGAGACTTGGCCTTTCTATAACTCGG 711 ||||||| |||||||||| |||||||||| | |||||||||||||||||||||||||||| Sbjct 645 TATCAATGTGGATACACTGAAGGTGCAAA-ACATGGAGACTTGGCCTTTCTATAACTCGG 703 Query 712 TAACTGGAGACTTGACACCCCTCAACTCGAAGACGGTTGCTGTGAAACTTCAAGTGTTTA 771 ||||||||||| ||| ||||||||| ||||||| |||||||||||||| |||||||||| Sbjct 704 TAACTGGAGACCTGAAACCCCTCAATTCGAAGAAAGTTGCTGTGAAACTCCAAGTGTTTA 763 Query 772 AAATTCTCGGCTTTATTCCGGTAAAAGCACCTGATGGTACTGCACGCGGTGAACTAGAGA 831 ||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||| Sbjct 764 AAATTCTCGGCTTTATTCCTGTAAAAGCACCTGATAG--C-GCACGCGGTGAACTAGAGA 820 Query 832 TTACCTATGTGGACGAGGAACTACGGATATCAAGGGG---CAAAGGCAACTTGTTGTTTA 888 |||| ||||||||||| ||||||||| |||||||||| |||||| |||||||| | | Sbjct 821 TTACTTATGTGGACGAAGAACTACGGTTATCAAGGGGTGACAAAGGGAACTTGTT-T--A 877 Query 889 TATTGAAGATGTTTGATCCCACTTATCGAATCCCTCTCTGATCT 932 ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 878 TATTGAAGATGTTCGATCCCACTTATCGAATCCCTCTCTGATCT 921 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37970425332 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5