BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26080.1
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484370 jgi|Araly1|484370|fgenesh2_kg.5__362__AT3G26080.1 1229 0.0
Ahg484369 jgi|Araly1|484369|fgenesh2_kg.5__361__AT3G26070.1 813 0.0
> Ahg484370 jgi|Araly1|484370|fgenesh2_kg.5__362__AT3G26080.1
Length=936
Score = 1229 bits (665), Expect = 0.0
Identities = 839/918 (91%), Gaps = 32/918 (3%)
Strand=Plus/Plus
Query 40 aaaaaaaCCTTATCTTTGTGACTTTCGGTGGTGTGTGTGATGTTGTTGTCGGTCATGGCG 99
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 24 AAAAAAATCTTATCTTTGTGACTTTCGGTGGTGTGTGTGATGTTGTTGTCGGCCATGGCG 83
Query 100 AAGACAGAGCTACGATCTCTCTCTTTTTCCTCTCTTATGTGTCTA---T----CTTCGAA 152
|||||||||| |||||||||||||||||||| |||||||||| || | |||||||
Sbjct 84 AAGACAGAGCAACGATCTCTCTCTTTTTCCT-TCTTATGTGTTTATCTTCGGACTTCGAA 142
Query 153 CAGAGTCTCTCAGAAACGACCCAGCCACTCTTTAAAACTCCATTGGAAAAGC--TTTGTC 210
||||||||||| ||||||| |||| |||| || |||||||||||||||| | ||||||
Sbjct 143 CAGAGTCTCTCTGAAACGAAGCAGCGACTC-TTGAAACTCCATTGGAAAAACTTTTTGTC 201
Query 211 CTGTTTTGATATCCATGGCTTTACCTTGGTGCTTAAAGACTGGAGTTTTAACG--T-CTC 267
|||||||||||| ||||||||||||||||| |||||||||||||||||||| | | |||
Sbjct 202 CTGTTTTGATATTCATGGCTTTACCTTGGTACTTAAAGACTGGAGTTTTAATGTCTCCTC 261
Query 268 CGGCCGCCGGATTTAATCAT-C---CA-TC----------GGACAGTGGCTTCGCCGTTC 312
||||||||||||||| || | | || || |||||||||||| |||||||
Sbjct 262 CGGCCGCCGGATTTAGTCTTCCAGGCAGTCTTATGAAGTTGGACAGTGGCTTTGCCGTTC 321
Query 313 CGACGAAGTTACTGAGTATTCGAAAAGGTGATCGGGAAAGATTGAGAATCCAAGCTGTTT 372
||| ||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 322 CGAAAAAGTTACAGAATATTCGTAAAGGTGATCGGGAAAGATTGAGAATCCAAGCTGTTT 381
Query 373 TCAGCTTTCCTCCAAGAAACGGTGGAGCCGAGAAGCGGAAACAGCTCAAACATGAACTTG 432
||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct 382 TCAGCTTTCCTCCAAGAAACGGTCAAACCGAGAAGCGGAAACAGCTCAAACAGGAACTTC 441
Query 433 TCGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCTCGCCTGATGATCAGCTTCTGA 492
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 442 TTGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCACGCCTGATGATCAGCTTCGGA 501
Query 493 TTGATCAGTTAGCACGTAAGGTGGAAGCAGTAAACCCAACCAAGGAGCCTCTGAAGTCTG 552
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 502 TTGATCAGTTAGCACGTAAGGTGGAAGCAGTAAACCCAACCAATGAGCCTCTGAAATCTG 561
Query 553 ATTTGATCAATGGGAAATGGGAGCTCATTTACACAACATCTGCTGCGATTTTGCAAGCAA 612
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 562 ATTTAATCAATGGGAAATGGGAGCTCATTTATACAACATCTGCTGCGATTTTGCAAGCAA 621
Query 613 AGAAACCAAGGTTCTTAAGATCGTTAACTAACTACCAATGTATCAATATGGATACACTAA 672
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 622 AGAAACCAAGGTTCTTAAGATCAATAACAAACTACCAATGTATCAATATGGATACACTAA 681
Query 673 AGGTGCAAAGAATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGACTTGACACCCC 732
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 682 AGGTGCAAAGAATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGATTTGACGCCCC 741
Query 733 TCAACTCGAAGACGGTTGCTGTGAAACTTCAAGTGTTTAAAATTCTCGGCTTTATTCCGG 792
|||| || |||| ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 742 TCAATTCCAAGAAGGTTGCTGTGAAACTCCAAGTGTTTAAAATTCTCGGCTTTATTCCTG 801
Query 793 TAAAAGCACCTGATGGTACTGCACGCGGTGAACTAGAGATTACCTATGTGGACGAGGAAC 852
|||||||||||||| | | || |||||||||||||||||||| ||||||||||||||||
Sbjct 802 TAAAAGCACCTGATAG--C-GCCCGCGGTGAACTAGAGATTACTTATGTGGACGAGGAAC 858
Query 853 TACGGATATCAAGGGGCAAAGGCAACTTGTTGTTTATATTGAAGATGTTTGATCCCACTT 912
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 859 TACGGATATCAAGGGGCAAAGGCAACTTGTTGTTTATATTGAAGATGTTCGATCCCACTT 918
Query 913 ATCGAATCCCTCTCTGAT 930
||||||||||||||||||
Sbjct 919 ATCGAATCCCTCTCTGAT 936
> Ahg484369 jgi|Araly1|484369|fgenesh2_kg.5__361__AT3G26070.1
Length=1190
Score = 813 bits (440), Expect = 0.0
Identities = 663/764 (87%), Gaps = 42/764 (5%)
Strand=Plus/Plus
Query 202 AGCTTTGTCCTGTTTTGATATCCATGGCTTTACCTTGGTGCTTAAAGACTGGAGTTTTAA 261
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 167 AGCTTTGTCCTGTTTTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGGTTTAA 226
Query 262 CGTCTCCGGCCGCCGGATTTAATC-AT-C--CA-TC----------GGACAGTGGCTTCG 306
|||||||||| | || ||||||| | | || || ||||||||| || |
Sbjct 227 TGTCTCCGGCCACTGGTTTTAATCTTTCCGGCAGTCTGATGAAGTTGGACAGTGGTTTTG 286
Query 307 CCGTTCCGACGAAGTTACTGAGTATTCGAAAAGGTGATCGGGAAAGATTGAGAATCCAAG 366
||||||||| ||||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 287 CCGTTCCGATAAAGTTACAGAGTAATCGAAAAGGTGATCGAGAAAGATTGAGAATCCAAG 346
Query 367 CTGTTTTCAGCTT---T-C--C---TC---CAAGAAACGGTGGAGCCGAGAAGCGGAAAC 414
|||| ||||| || | | | || ||||||||||| |||| ||||||| |||||
Sbjct 347 CTGTCTTCAGTTTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAGCAGAAAC 406
Query 415 AGCTCAAACATGAACTTGTCGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCTCGC 474
|||||||||| |||||| | ||||||||||||||||||||||||||||| || || || |
Sbjct 407 AGCTCAAACAAGAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCTTCAC 466
Query 475 CTGATGATCAGCTTCTG-ATTGATCAGTTAGCACGTAAGGTGGAAGCAG-TAAACCCAAC 532
||||||| ||||| | | |||||||||||||| ||||| |||||||| | ||| ||| ||
Sbjct 467 CTGATGACCAGCTAC-GTATTGATCAGTTAGCGCGTAAAGTGGAAGCTGTTAATCCC-AC 524
Query 533 CAAGGAGCCTCTGAAGTCTGATTTGATCAATGGGAAATGGGAGCTCATTTACACAACATC 592
||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||
Sbjct 525 CAAGGAGCCTCTGAAATCTGATTTGATCAATGGAAAATGGGAACTCATTTATACAACTTC 584
Query 593 TGCTGCGATTTTGCAAGCAAAGAAACCAAGGTTCTTAAGATCGTTAACTAACTACCAATG 652
|||| |||||||||| ||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 585 TGCTTCGATTTTGCAGGCAAAGAAACCGAGGTTCTTAAGATCAATAACCAACTACCAATC 644
Query 653 TATCAATATGGATACACTAAAGGTGCAAAGA-ATGGAGACTTGGCCTTTCTATAACTCGG 711
||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 645 TATCAATGTGGATACACTGAAGGTGCAAA-ACATGGAGACTTGGCCTTTCTATAACTCGG 703
Query 712 TAACTGGAGACTTGACACCCCTCAACTCGAAGACGGTTGCTGTGAAACTTCAAGTGTTTA 771
||||||||||| ||| ||||||||| ||||||| |||||||||||||| ||||||||||
Sbjct 704 TAACTGGAGACCTGAAACCCCTCAATTCGAAGAAAGTTGCTGTGAAACTCCAAGTGTTTA 763
Query 772 AAATTCTCGGCTTTATTCCGGTAAAAGCACCTGATGGTACTGCACGCGGTGAACTAGAGA 831
||||||||||||||||||| ||||||||||||||| | | |||||||||||||||||||
Sbjct 764 AAATTCTCGGCTTTATTCCTGTAAAAGCACCTGATAG--C-GCACGCGGTGAACTAGAGA 820
Query 832 TTACCTATGTGGACGAGGAACTACGGATATCAAGGGG---CAAAGGCAACTTGTTGTTTA 888
|||| ||||||||||| ||||||||| |||||||||| |||||| |||||||| | |
Sbjct 821 TTACTTATGTGGACGAAGAACTACGGTTATCAAGGGGTGACAAAGGGAACTTGTT-T--A 877
Query 889 TATTGAAGATGTTTGATCCCACTTATCGAATCCCTCTCTGATCT 932
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 878 TATTGAAGATGTTCGATCCCACTTATCGAATCCCTCTCTGATCT 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37970425332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5