BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26085.2
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936303 jgi|Araly1|936303|scaffold_500494.1 1177 0.0
> Ahg936303 jgi|Araly1|936303|scaffold_500494.1
Length=924
Score = 1177 bits (637), Expect = 0.0
Identities = 742/793 (94%), Gaps = 5/793 (1%)
Strand=Plus/Plus
Query 381 TTTGATGTAAGAGCCTCTTCAAGTCGTAAATCACTTAAGAAACTCAAAAGAGAGTCACAA 440
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||
Sbjct 131 TTTGATGTAAGAGCCTCTTCGAGTCGTAAATCACTTAAGAAACTCAGAAGAGAGTCTCAA 190
Query 441 CAAGGTAAAGACATAGGCTTAAGAAATGTTACAGATGAAGAAGTTTCTTCTCCAAGATTT 500
||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 191 CAAGGTAAAGACATAACCACAAGAAATGTTACAGAAGAAGAAGTTTCTTCTCCAAGATTT 250
Query 501 GAGGAAGCTCAAGTTGATTCTTC-AACTTCAAAGGACTCCA-T--TGATGTTTTTGTTGC 556
|||||||||||||||||| | || |||||||||||| || | | || |||| ||||||
Sbjct 251 GAGGAAGCTCAAGTTGATAC-TCTAACTTCAAAGGATTCTACTGGTGCTGTTGTTGTTGT 309
Query 557 TGCTCCTCGAGACAAAGTGCTTCAGGCTTGCACTGTAACTTCCGGTTTGATGGCTGCACT 616
||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 310 TGCTCCTCGAGACAAAGTGCTTCAGGCGTGTACTGTAACTTCTGGTTTAATGGCTGCACT 369
Query 617 AGGTCTGATCATCAGAAAGGCGTCTCATGTTGCTTCGACTGAAGGATTACTGGTTCCAGA 676
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct 370 AGGTCTGATCATCAGAAAGGCGTCTCATGTTGCTTCGACTCAAGGATTACCGGTTCCTGA 429
Query 677 CTGCTCTATAGATGTACCATTTGGGTTTGAAACTTGGCATCTCGGTTTAATTGCTGGAAT 736
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CTGCTCGATAGTTGTACCATTTGGGTTTGAAACTTGGCATCTCGGTTTAATTGCTGGAAT 489
Query 737 CGTTGTGTTTATATCGTCAAGTAGGTTCTTGCTACTTAAATCTTGGCCAGATTTTGCTGA 796
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 CGTTGTGTTTATATCATCAAGTAGGTTCTTGCTACTTAAATCTTGGCCAGATTTTGCTGA 549
Query 797 TTCTAGTGAAGCAGCAAACCGACAGATTCTCACTTCCCTCGAACCTCTAGATTACCTTGT 856
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 550 TTCTAGTGAAGCAGCAAACCGACAGATTCTTACTTCTCTCGAACCTCTAGATTACCTTGT 609
Query 857 TGTTGCAATGTTACCGGGAATAAGTGAGGAGCTGCTGTTTAGAGGTGCATTAATGCCTTT 916
|||||| |||||||| |||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 610 TGTTGCTATGTTACCTGGAATAAGTGAGGAAATGCTCTTTAGAGGTGCATTTATGCCTTT 669
Query 917 GTTCGGAACTAATTGGAATGGTATTGTAGCGGTTGGCCTCATTTTCGGTTTACTTCATCT 976
| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 670 GCTCGGAACCAATTGGAACGGTATTGTAGCGGTTGGACTCATTTTCGGTTTACTTCATCT 729
Query 977 CGGGAGCGGAAGAAAGTATTCTTTTGCAGTTTGGGCTTCGATTGTCGGTATAGTCTACGG 1036
|||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 730 CGGGAGTGGAAGAAAGTATTCTTTTGCAGTTTGGGCGTCGATTGTCGGTATAATCTACGG 789
Query 1037 TTATGCAGCTGTTTTGTCGTCGAGTCTTATCGTTCCAATGGCCTCGCACGCACTCAACAA 1096
||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||||||
Sbjct 790 TTATGCAGCTGTTTTGTCGTCAAGTCTTCTTGTTCCAATGGCCTCGCACGCGCTCAACAA 849
Query 1097 TTTGGTGGGAGGTCTGTTGTGGCGATATAGTTCCAAGATCAAGTCATTGGAGTGAAATAA 1156
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 850 TTTGGTGGGAGGTCTGTTGTGGCGACATAGTGCCAAGATCAAGTCATTGGAGTGAAACAA 909
Query 1157 ACAAAATTTACAA 1169
|||||||||||||
Sbjct 910 ACAAAATTTACAA 922
Score = 148 bits (80), Expect = 8e-35
Identities = 102/112 (91%), Gaps = 3/112 (3%)
Strand=Plus/Plus
Query 182 GATGGGTTCCATCGCTCTGCAATCTTGGAGCAGAGGAGCTTCAACTTCTCTTCATCTCCT 241
|||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 22 GATGGGTTTCATCGCTCTGCAATCTTGGAGCAGAGGATCTTCAACTTCTCTTCACCTCC- 80
Query 242 TTTTCGTCCAGTTGGCTCGAACCCTAAGCTATATGATGCTCGAAGAGTACAA 293
|||||||||||||||| |||||||||||||||||||||| | |||||||
Sbjct 81 --TTCGTCCAGTTGGCTCCAACCCTAAGCTATATGATGCTCCACTAGTACAA 130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5